MD09G1018000.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014446
Physical Location & Seq
Forward (+)
1117503 .. 1118718
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1018000.v1.1.491

Sequence Viewer

Length: 855 bp
ATGGGAAGACTACCTTGTTGTGACAAGGTCGGATTGAAACGAGGACCCTGGACGATCGAGGAAGATCACAAGCTCATGAATTTTATTCTCAACAATGGTATCCATTGCTGGAGAATGGTACCTAAACTTGCAGGGTTGCTGAGATGTGGGAAAAGCTGTAGATTAAGATGGATCAATTATCTAAGGCCGGACCTTAAGCGAGGTGGTTTTACTGAAGCTGAAGAGAATCAAATGATTCAACTCCATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCTGGCCGGACCGATAACGAAATAAAAAACCACTGGAATACCAGAATCAAGAAGAGGCTAAAGCACCTTGGCGTAGACCCTTTGACCCACAAACCCATTGAGGAAAAAGAACACATTGAAGAAAATAAAGACACAATTACTCAACAGTCAAACATTACTTCTTCATCATCAGAAGAAGGACTAGAAGAGTCACGAGGCACTGGCTTGGAGGCTAAGCTACTGGAAGATAGTAATGGAAACAAAGGGTTTCCAGAATCCGATGAGAAATCGCAAAATGAGGTTCAGTTAACCACGTTGGATGACGCGAATGATATCTCGGAAAACTATGAAGTTTTTTGTGGAAGCTTGGATTTGGGAACATTGATGTTAAACCAAGGATTTCCCAACACCAGCAGCATGTCTAATTCGTATAGTACCTCGTTTTCGGTGGAAGATTCTAACAACGCTTCCATTTCGATAGGGGAAACCATGCAGGAAAATTGTCTTCAACAGTGGGTTGATAGTGTGGATTCCATGCTCTCATGGGATGGCTTCAATATTTTCGGACAAGACCTTTTCTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

285

Amino Acids

32.26

Weight (kDa)

5.18

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 5.3e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 6.4e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 1.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 117 2.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14340 AT5G14340
fragaria_vesca FvH4_6g52440
malus_domestica MD09G1018000.v1.1 MD17G1018700.v1.1
prunus_persica Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0174081
rosa_laevigata RLG00000022245
rosa_multiflora Rmu_sc0012378.1_g000001
rosa_roxburghii Rroxscaffold_2G00078470
rosa_rugosa Rorug02G0574600
rosa_samantha Rh2AG653900 Rh2CG629500 Rh2DG679900
rosa_wichuraiana Rw2G053690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 593
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 234, 240
AfaI GTAC 2 cut(s) 120, 703
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 5 cut(s) 37, 239, 407, 776, 823
AjnI CCWGG 2 cut(s) 47, 289
AluBI AGCT 5 cut(s) 73, 156, 218, 505, 633
AluI AGCT 5 cut(s) 73, 156, 218, 505, 633
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 185, 292
ApeKI GCWGC 1 cut(s) 681
ApoI RAATTY 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 118
AspS9I GGNCC 3 cut(s) 44, 190, 297
AvaII GGWCC 3 cut(s) 44, 190, 297
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BanI GGYRCC 1 cut(s) 118
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 2 cut(s) 13, 764
BbvI GCAGC 1 cut(s) 693
BccI CCATC 2 cut(s) 162, 809
BciT130I CCWGG 2 cut(s) 49, 291
BciVI GTATCC 1 cut(s) 110
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 157
BfrI CTTAAG 1 cut(s) 194
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 1 cut(s) 682
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 683
Bme1390I CCNGG 2 cut(s) 49, 291
Bme18I GGWCC 3 cut(s) 44, 190, 297
BmgT120I GGNCC 3 cut(s) 44, 190, 297
BmiI GGNNCC 2 cut(s) 46, 120
BmrFI CCNGG 2 cut(s) 49, 291
BpiI GAAGAC 2 cut(s) 13, 764
BpmI CTGGAG 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 47, 355, 661
Bse1I ACTGG 3 cut(s) 326, 493, 513
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 49, 291
BseDI CCNNGG 3 cut(s) 47, 355, 661
BseGI GGATG 2 cut(s) 592, 820
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 3 cut(s) 326, 493, 513
BseXI GCAGC 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 593
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 187, 294
BshNI GGYRCC 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 188, 295
BsnI GGCC 2 cut(s) 187, 294
Bsp143I GATC 3 cut(s) 54, 64, 171
Bsp1720I GCTNAGC 1 cut(s) 501
BspANI GGCC 2 cut(s) 187, 294
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 593
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 46, 120
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 118
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 3 cut(s) 326, 493, 513
BssECI CCNNGG 3 cut(s) 47, 355, 661
BssMI GATC 3 cut(s) 54, 64, 171
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 2 cut(s) 355, 661
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 49, 291
Bst4CI ACNGT 2 cut(s) 435, 780
Bst6I CTCTTC 3 cut(s) 216, 335, 468
BstAFI CTTAAG 1 cut(s) 194
BstDEI CTNAG 4 cut(s) 140, 182, 270, 501
BstF5I GGATG 2 cut(s) 592, 820
BstFNI CGCG 1 cut(s) 593
BstKTI GATC 3 cut(s) 57, 67, 174
BstMBI GATC 3 cut(s) 54, 64, 171
BstMCI CGRYCG 1 cut(s) 57
BstNI CCWGG 2 cut(s) 49, 291
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 2 cut(s) 47, 289
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 1 cut(s) 693
BstV2I GAAGAC 2 cut(s) 13, 764
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 2 cut(s) 187, 294
BtsCI GGATG 2 cut(s) 592, 820
BtsIMutI CAGTG 3 cut(s) 319, 486, 785
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 44, 190, 297
CpoI CGGWCCG 1 cut(s) 297
CseI GACGC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 119, 702
CspI CGGWCCG 1 cut(s) 297
CviAII CATG 6 cut(s) 76, 249, 685, 757, 802, 810
CviQI GTAC 2 cut(s) 119, 702
DdeI CTNAG 4 cut(s) 140, 182, 270, 501
DpnI GATC 3 cut(s) 56, 66, 173
DpnII GATC 3 cut(s) 54, 64, 171
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 3 cut(s) 216, 335, 468
EarI CTCTTC 3 cut(s) 216, 335, 468
Eco130I CCWWGG 2 cut(s) 355, 661
Eco32I GATATC 1 cut(s) 601
Eco47I GGWCC 3 cut(s) 44, 190, 297
Eco57I CTGAAG 2 cut(s) 234, 240
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 47, 289
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 2 cut(s) 355, 661
ErhI CCWWGG 2 cut(s) 355, 661
FaeI CATG 6 cut(s) 79, 252, 688, 760, 805, 813
FaiI YATR 8 cut(s) 77, 250, 615, 686, 699, 758, 803, 811
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 6 cut(s) 75, 248, 684, 756, 801, 809
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 682
FokI GGATG 2 cut(s) 599, 827
Fsp4HI GCNGC 1 cut(s) 682
FspBI CTAG 1 cut(s) 470
GluI GCNGC 1 cut(s) 682
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 187, 294
HapII CCGG 2 cut(s) 188, 295
HgaI GACGC 1 cut(s) 599
Hin1II CATG 6 cut(s) 79, 252, 688, 760, 805, 813
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 7 cut(s) 226, 235, 333, 476, 542, 722, 797
HpaI GTTAAC 1 cut(s) 576
HpaII CCGG 2 cut(s) 188, 295
Hpy166II GTNNAC 2 cut(s) 364, 576
Hpy188I TCNGA 5 cut(s) 32, 460, 547, 607, 833
Hpy188III TCNNGA 4 cut(s) 76, 337, 480, 539
Hpy8I GTNNAC 2 cut(s) 364, 576
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 435, 780
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 2 cut(s) 131, 760
HpyF3I CTNAG 4 cut(s) 140, 182, 270, 501
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 6 cut(s) 79, 252, 688, 760, 805, 813
KpnI GGTACC 1 cut(s) 122
KspAI GTTAAC 1 cut(s) 576
Kzo9I GATC 3 cut(s) 54, 64, 171
Lsp1109I GCAGC 1 cut(s) 693
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 3 cut(s) 20, 257, 477
MalI GATC 3 cut(s) 56, 66, 173
MboI GATC 3 cut(s) 54, 64, 171
MluCI AATT 5 cut(s) 79, 175, 423, 691, 766
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 10, 564
MnlI CCTC 9 cut(s) 35, 52, 194, 336, 382, 476, 490, 559, 715
MseI TTAA 4 cut(s) 164, 195, 575, 656
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 2 cut(s) 188, 295
MspR9I CCNGG 2 cut(s) 49, 291
MvaI CCWGG 2 cut(s) 49, 291
MvnI CGCG 1 cut(s) 593
NdeII GATC 3 cut(s) 54, 64, 171
NlaIII CATG 6 cut(s) 79, 252, 688, 760, 805, 813
NlaIV GGNNCC 2 cut(s) 46, 120
NmuCI GTSAC 2 cut(s) 20, 477
NspI RCATGY 1 cut(s) 688
PagI TCATGA 1 cut(s) 75
PfeI GAWTC 6 cut(s) 226, 235, 333, 542, 722, 797
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 683
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 47, 289
PspGI CCWGG 2 cut(s) 47, 289
PspN4I GGNNCC 2 cut(s) 46, 120
PspPI GGNCC 3 cut(s) 44, 190, 297
PspPPI RGGWCCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 26
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 2 cut(s) 120, 703
RsaNI GTAC 2 cut(s) 119, 702
Rsr2I CGGWCCG 1 cut(s) 297
RsrII CGGWCCG 1 cut(s) 297
SaqAI TTAA 4 cut(s) 164, 195, 575, 656
SatI GCNGC 1 cut(s) 682
Sau3AI GATC 3 cut(s) 54, 64, 171
Sau96I GGNCC 3 cut(s) 44, 190, 297
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 49, 291
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 3 cut(s) 44, 190, 297
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 5 cut(s) 79, 175, 423, 691, 766
SspI AATATT 1 cut(s) 826
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 47, 289
StyI CCWWGG 2 cut(s) 355, 661
TaaI ACNGT 2 cut(s) 435, 780
TaiI ACGT 1 cut(s) 584
TaqI TCGA 2 cut(s) 57, 743
TaqII GACCGA 1 cut(s) 314
TasI AATT 5 cut(s) 79, 175, 423, 691, 766
TfiI GAWTC 6 cut(s) 226, 235, 333, 542, 722, 797
Tru1I TTAA 4 cut(s) 164, 195, 575, 656
Tru9I TTAA 4 cut(s) 164, 195, 575, 656
TscAI CASTG 3 cut(s) 326, 493, 785
TseFI GTSAC 2 cut(s) 20, 477
TseI GCWGC 1 cut(s) 681
Tsp45I GTSAC 2 cut(s) 20, 477
TspDTI ATGAA 4 cut(s) 92, 237, 441, 630
TspRI CASTG 3 cut(s) 326, 493, 785
Tth111I GACNNNGTC 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 3 cut(s) 44, 190, 297
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.