Prupe.3G299000_v2.0.a1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014446
Physical Location & Seq
Reverse (-)
26450861 .. 26455254
4394 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G299000.2

Sequence Viewer

Length: 1038 bp
ATGGGAAGACAACCTTGTTGTGACAAGGTCGGATTGAAACGAGGTCCATGGACAATTGAGGAAGATCACAAGCTCATGAACTTTATTCTCAACAATGGTATCCATTGCTGGCGAATGGTTCCTAAGCTTGCAGGATTGCTTAGATGTGGGAAAAGCTGCAGATTAAGATGGATCAATTATTTAAGGCCAGACCTCAAAAGAGGTGCTTTTACAGAAACAGAAGAGAATCAAATCATTCAACTCCATTCATGTCTTGGCAACAGGTGGTCTAAGATTGCTTCCCATTTTCCTGGTCGCACAGATAATGAAATCAAGAACCATTGGAATACCAGAATCAAGAAGAGGTTAAAGCACCATGGTGTAGACCCTTTGACCCACAAACCCATTGAGCATAAAGAAAACATTGCAGAAAAGAAACAGACAATTACTCGAGAAGATTCAAGTTCATCAATATCACAAGGACAAGAAGAGTCACAAGACAGTGGCTTGGAGGCTAAGCTACAGCAGGATGGTAATGGCAATAAAGGGTTTCCAGAATTCAATGACAAATTGCAAAATGTACCAGAGTTAGCAGGTTTCGATGAGACGAACGATCTTTTGAAAAATTACGAAATGTTTTGTGGAAGCTTGGATTTGGGAACATTCCTGTTGAACCAAGGAACCAATACCAACAACACCAGCACTTCAAATTCATATAGCACTTCTTCATTCTCTGTGGAAGAGTCTAACAACCCTTCAATTTCGATAGGCGAATCAATTCAAGAACACTCTCTACAGAAATGGGTGGACAATCAGGAGCAATTCAGAAGGAAGAGGAGCATGTCAGCGATACAGAGAGCGATCCGGAGGTTCCACGCTACCGTGAATGCTCCAAGGCTCACCAGATTGTCTCTCCATGCGCCTAGATGTGTAGAGGTGGAGTTTGGAAATGGTAGTGTGTTCAATTTGTCAGCTGAATTCTTAAGAATACACAGTCCAGCTGTTGATGCCAAGGTTAGGTCAATTGCTGGTGAAAAGCAGCTCCATATGGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

346

Amino Acids

39.31

Weight (kDa)

8.95

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14340 AT5G14340
fragaria_vesca FvH4_6g52440
malus_domestica MD09G1018000.v1.1 MD17G1018700.v1.1
prunus_persica Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0174081
rosa_laevigata RLG00000022245
rosa_multiflora Rmu_sc0012378.1_g000001
rosa_roxburghii Rroxscaffold_2G00078470
rosa_rugosa Rorug02G0574600
rosa_samantha Rh2AG653900 Rh2CG629500 Rh2DG679900
rosa_wichuraiana Rw2G053690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 563
AccI GTMKAC 1 cut(s) 363
AccIII TCCGGA 1 cut(s) 843
AclWI GGATC 2 cut(s) 179, 835
AcsI RAATTY 3 cut(s) 536, 688, 956
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 1 cut(s) 996
AflII CTTAAG 1 cut(s) 961
AjnI CCWGG 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 357
AluBI AGCT 8 cut(s) 73, 127, 156, 499, 627, 953, 980, 1021
AluI AGCT 8 cut(s) 73, 127, 156, 499, 627, 953, 980, 1021
Alw26I GTCTC 2 cut(s) 578, 894
AlwI GGATC 2 cut(s) 179, 835
Ama87I CYCGRG 1 cut(s) 429
Aor13HI TCCGGA 1 cut(s) 843
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 156, 1018
ApoI RAATTY 3 cut(s) 536, 688, 956
Asp700I GAANNNNTTC 1 cut(s) 756
AspLEI GCGC 1 cut(s) 901
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 871, 1022
AvaI CYCGRG 1 cut(s) 429
AvaII GGWCC 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BbsI GAAGAC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 143, 1030
BccI CCATC 2 cut(s) 162, 503
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 578, 894
BfaI CTAG 1 cut(s) 903
BfmI CTRYAG 3 cut(s) 157, 500, 773
BfrI CTTAAG 1 cut(s) 961
BfuAI ACCTGC 1 cut(s) 563
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 2 cut(s) 157, 1019
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 2 cut(s) 158, 1020
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 120, 661, 851
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 976
BpiI GAAGAC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 495
BsaJI CCNNGG 5 cut(s) 47, 355, 655, 872, 990
BsaWI WCCGGW 1 cut(s) 843
Bsc4I CCNNNNNNNGG 1 cut(s) 996
Bse3DI GCAATG 2 cut(s) 103, 402
BseAI TCCGGA 1 cut(s) 843
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 5 cut(s) 47, 355, 655, 872, 990
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 996
BseMI GCAATG 2 cut(s) 103, 402
BseRI GAGGAG 1 cut(s) 829
BseXI GCAGC 2 cut(s) 143, 1030
BshFI GGCC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 1 cut(s) 844
BslI CCNNNNNNNGG 1 cut(s) 996
BsmAI GTCTC 2 cut(s) 578, 894
BsmBI CGTCTC 1 cut(s) 578
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 429
Bsp13I TCCGGA 1 cut(s) 843
Bsp143I GATC 4 cut(s) 64, 171, 592, 840
Bsp1720I GCTNAGC 1 cut(s) 495
Bsp19I CCATGG 2 cut(s) 47, 355
BspANI GGCC 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 843
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 120, 661, 851
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 179, 835
BspTI CTTAAG 1 cut(s) 961
BsrDI GCAATG 2 cut(s) 103, 402
BssECI CCNNGG 5 cut(s) 47, 355, 655, 872, 990
BssMI GATC 4 cut(s) 64, 171, 592, 840
BssT1I CCWWGG 5 cut(s) 47, 355, 655, 872, 990
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 482, 862, 974
Bst6I CTCTTC 5 cut(s) 216, 335, 462, 714, 806
BstAFI CTTAAG 1 cut(s) 961
BstC8I GCNNGC 2 cut(s) 110, 129
BstDEI CTNAG 4 cut(s) 123, 140, 270, 495
BstDSI CCRYGG 2 cut(s) 47, 355
BstF5I GGATG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 901
BstKTI GATC 4 cut(s) 67, 174, 595, 843
BstMAI GTCTC 2 cut(s) 578, 894
BstMBI GATC 4 cut(s) 64, 171, 592, 840
BstMWI GCNNNNNNNGC 1 cut(s) 986
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 3 cut(s) 157, 500, 773
BstV1I GCAGC 2 cut(s) 143, 1030
BstV2I GAAGAC 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 290
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 2 cut(s) 47, 355
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 110, 129
CciI TCATGA 1 cut(s) 75
CfoI GCGC 1 cut(s) 901
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 560
CviAII CATG 6 cut(s) 48, 76, 249, 356, 820, 896
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 4 cut(s) 123, 140, 270, 495
DpnI GATC 4 cut(s) 66, 173, 594, 842
DpnII GATC 4 cut(s) 64, 171, 592, 840
Eam1104I CTCTTC 5 cut(s) 216, 335, 462, 714, 806
EarI CTCTTC 5 cut(s) 216, 335, 462, 714, 806
Eco130I CCWWGG 5 cut(s) 47, 355, 655, 872, 990
Eco47I GGWCC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 429
EcoRI GAATTC 2 cut(s) 536, 956
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 5 cut(s) 47, 355, 655, 872, 990
ErhI CCWWGG 5 cut(s) 47, 355, 655, 872, 990
Esp3I CGTCTC 1 cut(s) 578
FaeI CATG 6 cut(s) 51, 79, 252, 359, 823, 899
FalI AAGNNNNNCTT 3 cut(s) 30, 190, 222
FatI CATG 6 cut(s) 47, 75, 248, 355, 819, 895
FauNDI CATATG 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 157, 1019
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 2 cut(s) 157, 1019
FspBI CTAG 1 cut(s) 903
GlaI GCGC 1 cut(s) 900
GluI GCNGC 2 cut(s) 157, 1019
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 844
HhaI GCGC 1 cut(s) 901
Hin1II CATG 6 cut(s) 51, 79, 252, 359, 823, 899
Hin6I GCGC 1 cut(s) 899
HinP1I GCGC 1 cut(s) 899
HindIII AAGCTT 2 cut(s) 125, 625
HinfI GANTC 6 cut(s) 226, 333, 437, 470, 722, 752
HpaII CCGG 1 cut(s) 844
HphI GGTGA 2 cut(s) 871, 1022
Hpy166II GTNNAC 2 cut(s) 364, 787
Hpy188I TCNGA 2 cut(s) 32, 806
Hpy188III TCNNGA 8 cut(s) 76, 313, 337, 431, 533, 761, 794, 844
Hpy8I GTNNAC 2 cut(s) 364, 787
HpyAV CCTTC 2 cut(s) 744, 801
HpyCH4III ACNGT 3 cut(s) 482, 862, 974
HpyCH4V TGCA 4 cut(s) 131, 159, 407, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 986
HpyF3I CTNAG 4 cut(s) 123, 140, 270, 495
Hsp92II CATG 6 cut(s) 51, 79, 252, 359, 823, 899
HspAI GCGC 1 cut(s) 899
Kpn2I TCCGGA 1 cut(s) 843
Kzo9I GATC 4 cut(s) 64, 171, 592, 840
LmnI GCTCC 4 cut(s) 796, 816, 874, 1026
Lsp1109I GCAGC 2 cut(s) 143, 1030
LweI GCATC 1 cut(s) 976
MaeI CTAG 1 cut(s) 903
MaeIII GTNAC 2 cut(s) 20, 471
MalI GATC 4 cut(s) 66, 173, 594, 842
MboI GATC 4 cut(s) 64, 171, 592, 840
MboII GAAGA 9 cut(s) 18, 74, 233, 352, 446, 479, 696, 731, 823
MfeI CAATTG 2 cut(s) 54, 1002
MlyI GAGTC 2 cut(s) 479, 731
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 9 cut(s) 35, 52, 194, 203, 336, 484, 807, 840, 907
MroI TCCGGA 1 cut(s) 843
MroXI GAANNNNTTC 1 cut(s) 756
MseI TTAA 4 cut(s) 164, 182, 347, 962
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 2 cut(s) 953, 980
MspCI CTTAAG 1 cut(s) 961
MspI CCGG 1 cut(s) 844
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 2 cut(s) 54, 1002
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 986
NcoI CCATGG 2 cut(s) 47, 355
NdeI CATATG 1 cut(s) 1026
NdeII GATC 4 cut(s) 64, 171, 592, 840
NlaIII CATG 6 cut(s) 51, 79, 252, 359, 823, 899
NlaIV GGNNCC 3 cut(s) 120, 661, 851
NmuCI GTSAC 2 cut(s) 20, 471
NspI RCATGY 1 cut(s) 823
OliI CACNNNNGTG 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 429
PagI TCATGA 1 cut(s) 75
PctI GAATGC 1 cut(s) 871
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 4 cut(s) 226, 333, 437, 752
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 158, 1020
PleI GAGTC 2 cut(s) 478, 730
PpsI GAGTC 2 cut(s) 478, 730
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 120, 661, 851
PspPI GGNCC 1 cut(s) 44
PsrI GAACNNNNNNTAC 2 cut(s) 756, 788
PstI CTGCAG 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 2 cut(s) 953, 980
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 4 cut(s) 164, 182, 347, 962
SatI GCNGC 2 cut(s) 157, 1019
Sau3AI GATC 4 cut(s) 64, 171, 592, 840
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 2 cut(s) 479, 731
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 1 cut(s) 976
SfcI CTRYAG 3 cut(s) 157, 500, 773
Sfr274I CTCGAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 429, 961
SmoI CTYRAG 2 cut(s) 429, 961
SspMI CTAG 1 cut(s) 903
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 5 cut(s) 47, 355, 655, 872, 990
TaaI ACNGT 3 cut(s) 482, 862, 974
TaqI TCGA 3 cut(s) 430, 579, 743
TfiI GAWTC 4 cut(s) 226, 333, 437, 752
Tru1I TTAA 4 cut(s) 164, 182, 347, 962
Tru9I TTAA 4 cut(s) 164, 182, 347, 962
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 2 cut(s) 20, 471
TseI GCWGC 2 cut(s) 156, 1018
Tsp45I GTSAC 2 cut(s) 20, 471
TspDTI ATGAA 6 cut(s) 92, 237, 321, 435, 681, 696
TspRI CASTG 1 cut(s) 487
Tth111I GACNNNGTC 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 536, 688, 956
XceI RCATGY 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.