Rroxscaffold_2G00078470
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014446
Physical Location & Seq
Forward (+)
1767231 .. 1768509
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078470.1

Sequence Viewer

Length: 852 bp
ATGGGAAGGCAGCCTTGTTGTGACAAAGTTGGGTTGAAAAGAGGTCCATGGACAATTGAGGAGGATCACAAGCTCATGAATTTTATCCTCAACAATGGGATCCATTGCTGGAGAGTGGTTCCTAAGCTTGCAGGATTGCTTAGATGTGGGAAAAGCTGCAGACTCAGATGGATCAATTATCTAAGGCCAGACCTCAAGAGAGGTGCTTTTACAGAAACGGAAGAGGATCAGATCATTCAACTCCATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCGGGTAGGACAGATAATGAAATCAAGAACCACTGGAATACAAGGATCAAGAAGAGGTTAAAGCTCCTCGGAGTAGACTCTGTGAGCAACAAAGCCATTGAGCCAAAAGAAAGCATGGAAAACAATAAAGAGATAGTTACTGATATTTCAACAGAACTAGGACAAGACAATGGCTTGGAGCCGAAATTGCTCCAGGATGATGATAATGGGAATGAGGGATTTGAAGAACTTTCCAATGAGGTTGAGTTAAGTGCCTTTGATGAGACCGCTGATGTTTTGGAAAACTACGAAATGTTTTGTGGGAGCTTGGATTTGGGAACATTCATGTTGAACCAAGGAGTTAGCAACAGCAGCACCACTAGTTCCAACAACACTAGTGCTACTACTACTACTACTACTAATTCTTCATTTTCTGTGGAAGAGTCTAATTACAACCCTTCGATTTCAATAAGTGATCAATCGCTACTGCAACAGAACTGTCTACAGCAATGGGTTGCGAGTGTGGATTCCATGCTCTCGTGGGATGGCTTCAACAATCTGGAACAAGACCTTTTCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.02

Weight (kDa)

4.83

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.4e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 5e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 1.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 6.9e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14340 AT5G14340
fragaria_vesca FvH4_6g52440
malus_domestica MD09G1018000.v1.1 MD17G1018700.v1.1
prunus_persica Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0174081
rosa_laevigata RLG00000022245
rosa_multiflora Rmu_sc0012378.1_g000001
rosa_roxburghii Rroxscaffold_2G00078470
rosa_rugosa Rorug02G0574600
rosa_samantha Rh2AG653900 Rh2CG629500 Rh2DG679900
rosa_wichuraiana Rw2G053690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 363, 769
AciI CCGC 1 cut(s) 555
AclWI GGATC 6 cut(s) 72, 94, 107, 179, 234, 341
AcsI RAATTY 1 cut(s) 79
AgsI TTSAA 7 cut(s) 37, 239, 438, 512, 619, 735, 820
AhlI ACTAGT 2 cut(s) 647, 662
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 5 cut(s) 73, 127, 156, 352, 594
AluI AGCT 5 cut(s) 73, 127, 156, 352, 594
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 6 cut(s) 72, 94, 107, 179, 234, 341
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 10, 156, 639
ApoI RAATTY 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 44
BamHI GGATCC 1 cut(s) 99
BauI CACGAG 1 cut(s) 805
BbvI GCAGC 3 cut(s) 22, 143, 651
BccI CCATC 2 cut(s) 162, 806
BciT130I CCWGG 1 cut(s) 482
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 545
BcuI ACTAGT 2 cut(s) 647, 662
BfaI CTAG 3 cut(s) 446, 648, 663
BfmI CTRYAG 2 cut(s) 157, 770
BisI GCNGC 3 cut(s) 11, 157, 640
BlsI GCNGC 3 cut(s) 12, 158, 641
Bme1390I CCNGG 2 cut(s) 291, 482
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 101, 120, 468
BmrFI CCNGG 2 cut(s) 291, 482
BpmI CTGGAG 2 cut(s) 130, 464
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 47, 355, 622
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 2 cut(s) 103, 782
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 3 cut(s) 47, 355, 622
BseGI GGATG 2 cut(s) 490, 817
BseMI GCAATG 2 cut(s) 103, 782
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 74, 344
BseXI GCAGC 3 cut(s) 22, 143, 651
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 545
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 545
Bsp143I GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 555
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 177
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 101, 120, 468
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 6 cut(s) 72, 94, 107, 179, 234, 341
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 103, 782
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 47, 355, 622
BssMI GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
BssSI CACGAG 1 cut(s) 805
BssT1I CCWWGG 2 cut(s) 47, 622
Bst2BI CACGAG 1 cut(s) 805
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 1 cut(s) 767
Bst6I CTCTTC 3 cut(s) 216, 335, 702
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 5 cut(s) 123, 140, 164, 182, 270
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 490, 817
BstKTI GATC 7 cut(s) 67, 102, 174, 229, 234, 336, 745
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
BstMWI GCNNNNNNNGC 2 cut(s) 475, 639
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 289, 480
BstSFI CTRYAG 2 cut(s) 157, 770
BstV1I GCAGC 3 cut(s) 22, 143, 651
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 490, 817
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 6 cut(s) 48, 76, 249, 403, 613, 799
DdeI CTNAG 5 cut(s) 123, 140, 164, 182, 270
DpnI GATC 7 cut(s) 66, 101, 173, 228, 233, 335, 744
DpnII GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
Eam1104I CTCTTC 3 cut(s) 216, 335, 702
EarI CTCTTC 3 cut(s) 216, 335, 702
Eco130I CCWWGG 2 cut(s) 47, 622
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 2 cut(s) 47, 622
ErhI CCWWGG 2 cut(s) 47, 622
FaeI CATG 6 cut(s) 51, 79, 252, 406, 616, 802
FaiI YATR 6 cut(s) 49, 77, 250, 404, 614, 800
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 6 cut(s) 47, 75, 248, 402, 612, 798
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 2 cut(s) 363, 769
Fnu4HI GCNGC 3 cut(s) 11, 157, 640
FokI GGATG 2 cut(s) 497, 824
Fsp4HI GCNGC 3 cut(s) 11, 157, 640
FspBI CTAG 3 cut(s) 446, 648, 663
GluI GCNGC 3 cut(s) 11, 157, 640
GsuI CTGGAG 2 cut(s) 130, 464
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 290
Hin1II CATG 6 cut(s) 51, 79, 252, 406, 616, 802
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 162, 365, 710, 794
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 364, 770
Hpy188I TCNGA 3 cut(s) 167, 231, 359
Hpy188III TCNNGA 5 cut(s) 76, 196, 313, 337, 827
Hpy8I GTNNAC 2 cut(s) 364, 770
HpyAV CCTTC 1 cut(s) 735
HpyCH4III ACNGT 1 cut(s) 767
HpyCH4V TGCA 3 cut(s) 131, 159, 757
HpyF10VI GCNNNNNNNGC 2 cut(s) 475, 639
HpyF3I CTNAG 5 cut(s) 123, 140, 164, 182, 270
Hsp92II CATG 6 cut(s) 51, 79, 252, 406, 616, 802
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
LmnI GCTCC 4 cut(s) 357, 466, 483, 591
LpnPI CCDG 9 cut(s) 94, 117, 201, 247, 303, 307, 467, 494, 812
Lsp1109I GCAGC 3 cut(s) 22, 143, 651
MaeI CTAG 3 cut(s) 446, 648, 663
MaeIII GTNAC 3 cut(s) 20, 257, 424
MalI GATC 7 cut(s) 66, 101, 173, 228, 233, 335, 744
MboI GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
MboII GAAGA 6 cut(s) 233, 352, 524, 684, 719, 835
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 99
MluCI AATT 6 cut(s) 54, 79, 175, 473, 688, 715
MlyI GAGTC 3 cut(s) 156, 359, 719
MmeI TCCRAC 1 cut(s) 678
MseI TTAA 2 cut(s) 347, 536
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 291, 482
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 475, 639
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 47
NdeII GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
NlaIII CATG 6 cut(s) 51, 79, 252, 406, 616, 802
NlaIV GGNNCC 3 cut(s) 101, 120, 468
NmuCI GTSAC 1 cut(s) 20
PagI TCATGA 1 cut(s) 75
PfeI GAWTC 1 cut(s) 794
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 3 cut(s) 12, 158, 641
PleI GAGTC 3 cut(s) 156, 359, 718
PpsI GAGTC 3 cut(s) 156, 359, 718
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 3 cut(s) 101, 120, 468
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 99
SaqAI TTAA 2 cut(s) 347, 536
SatI GCNGC 3 cut(s) 11, 157, 640
Sau3AI GATC 7 cut(s) 64, 99, 171, 226, 231, 333, 742
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 3 cut(s) 156, 359, 719
ScrFI CCNGG 2 cut(s) 291, 482
SfcI CTRYAG 2 cut(s) 157, 770
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SpeI ACTAGT 2 cut(s) 647, 662
Sse9I AATT 6 cut(s) 54, 79, 175, 473, 688, 715
SsiI CCGC 1 cut(s) 555
SspMI CTAG 3 cut(s) 446, 648, 663
StyD4I CCNGG 2 cut(s) 289, 480
StyI CCWWGG 2 cut(s) 47, 622
TaaI ACNGT 1 cut(s) 767
TaqI TCGA 1 cut(s) 728
TasI AATT 6 cut(s) 54, 79, 175, 473, 688, 715
TfiI GAWTC 1 cut(s) 794
Tru1I TTAA 2 cut(s) 347, 536
Tru9I TTAA 2 cut(s) 347, 536
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 3 cut(s) 10, 156, 639
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 92, 237, 321, 601, 684
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmiI GTMKAC 2 cut(s) 363, 769
XspI CTAG 3 cut(s) 446, 648, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.