AT5G14530

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4684597 .. 4687023
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14530.1

Sequence Viewer

Length: 993 bp
ATGTCGTTGACGGAGCTAGACGACGGACTGGTTCGCAGGATGGCCATGGGCGCAGTCTTCTCTGATTTTGGAGGGAAGATACATTCGGTGGGTTTCCATAGGACTGATGATCTATTGGTCACATCCAGCGAAGATGATTCACTTCGCCTCTTCGATATCGCCAACGCTAAACAGCTGAAGATTACATACCATAAGAAACATGGCACCGATCGTGTATGCTTTACCCATCATCCTAGCTCTCTAATTTGCTCTTCTCGATACAATTTGGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAATCGGATCCTACGCTACTTTAAAGGGCATAAAGACAGGGTTGTATCACTTTGTATGTCTCCTATAAATGATAGCTTCATGTCTGGTTCTCTCGACCGAAGTGTTAGACTCTGGGATCTTCGTGTAAATGCCTGCCAGGGAATTCTACATCTACGTGGTAGACCTGCAGTTGCGTATGACCAACAAGGCCTTGTGTTTGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCAGGTGTTATGACAAGGGTCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATAAAATTCAGCAACGATGGGAAATCCATGCTCCTAACGACTACAAATAACAATATCTACGTTCTTGATGCATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCTTCACAGGGTACACCCATAGAGGCCACCTTCACACCAGATGGCAAGTATGTTCTGTCAGGTTCAGGTGATGGAACCTTACATGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGTGTCGTGTCTGAAATGGGCACCACGTAGAGCCATGTTCGTTGCTGCTTCTACGGTTCTCACATTCTGGATCCCAAACGACGGTGAATCACCAGCCCCCGCCGATCCTCCTACCGATCAACAACAGTGA

Protein Analysis

330

Amino Acids

36.63

Weight (kDa)

5.99

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 19 - 218 5.8e-19 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 24 - 146 1.3e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 25 - 145 9.5e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 26 - 306 1.3e-32 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 27 - 306 6.7e-11 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 101 - 149 2.2e-06 WDR3 first beta-propeller domain
WD40 PF00400 107 - 142 5.2e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 109 - 304 4.6e-24 THOC3 beta-propeller domain
WD40_Gbeta PF25391 109 - 272 8.9e-12 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 118 - 277 1.7e-15 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 157 - 283 9.8e-10 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 159 - 303 1.1e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 160 - 305 4e-10 WDR3 first beta-propeller domain
WDR55 PF24796 168 - 306 3.7e-09 WDR55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013284)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 2 cut(s) 203, 883
AccI GTMKAC 1 cut(s) 469
AciI CCGC 1 cut(s) 963
AclWI GGATC 6 cut(s) 310, 323, 432, 928, 941, 962
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 2 cut(s) 450, 620
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 736
AfiI CCNNNNNNNGG 3 cut(s) 731, 832, 944
AjnI CCWGG 2 cut(s) 444, 548
AluBI AGCT 4 cut(s) 16, 175, 237, 384
AluI AGCT 4 cut(s) 16, 175, 237, 384
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 6 cut(s) 310, 323, 432, 928, 941, 962
AoxI GGCC 3 cut(s) 42, 496, 747
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 2 cut(s) 450, 620
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 4 cut(s) 290, 803, 945, 959
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 886
BalI TGGCCA 1 cut(s) 44
BamHI GGATCC 2 cut(s) 315, 933
BanI GGYRCC 2 cut(s) 203, 883
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbsI GAAGAC 1 cut(s) 49
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 895
BccI CCATC 6 cut(s) 34, 234, 626, 758, 788, 835
BciT130I CCWGG 2 cut(s) 446, 550
BciVI GTATCC 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 2 cut(s) 17, 234
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 481
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 1 cut(s) 909
BlsI GCNGC 1 cut(s) 910
Bme1390I CCNGG 2 cut(s) 446, 550
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 8 cut(s) 205, 317, 567, 568, 723, 799, 885, 935
BmrFI CCNGG 2 cut(s) 446, 550
BmsI GCATC 1 cut(s) 673
BoxI GACNNNNGTC 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 307
BsaAI YACGTR 2 cut(s) 464, 890
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 2 cut(s) 45, 445
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 731, 832, 944
Bse1I ACTGG 2 cut(s) 33, 280
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 2 cut(s) 446, 550
BseDI CCNNGG 2 cut(s) 45, 445
BseGI GGATG 3 cut(s) 45, 122, 229
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 3 cut(s) 731, 832, 944
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 594, 822
BseNI ACTGG 2 cut(s) 33, 280
BseSI GKGCMC 1 cut(s) 886
BseXI GCAGC 1 cut(s) 895
Bsh1285I CGRYCG 2 cut(s) 211, 406
BshFI GGCC 3 cut(s) 44, 498, 749
BshNI GGYRCC 2 cut(s) 203, 883
BsiEI CGRYCG 2 cut(s) 211, 406
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 3 cut(s) 731, 832, 944
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 3 cut(s) 44, 498, 749
Bsp1286I GDGCHC 1 cut(s) 886
Bsp143I GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 963
BspANI GGCC 3 cut(s) 44, 498, 749
BspCNI CTCAG 2 cut(s) 595, 823
BspLI GGNNCC 8 cut(s) 205, 317, 567, 568, 723, 799, 885, 935
BspMAI CTGCAG 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 6 cut(s) 310, 323, 432, 928, 941, 962
BspQI GCTCTTC 1 cut(s) 256
BspT107I GGYRCC 2 cut(s) 203, 883
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 2 cut(s) 33, 280
BssECI CCNNGG 2 cut(s) 45, 445
BssMI GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 446, 550
Bst4CI ACNGT 3 cut(s) 919, 947, 990
Bst6I CTCTTC 2 cut(s) 155, 256
BstBAI YACGTR 2 cut(s) 464, 890
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 603, 831
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 45, 122, 229
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 7 cut(s) 112, 211, 318, 427, 936, 970, 982
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
BstMCI CGRYCG 2 cut(s) 211, 406
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 446, 550
BstNSI RCATGY 1 cut(s) 809
BstPAI GACNNNNGTC 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 444, 548
BstSFI CTRYAG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 886
BstV1I GCAGC 1 cut(s) 895
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 3 cut(s) 315, 424, 933
BstYI RGATCY 3 cut(s) 315, 424, 933
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 3 cut(s) 44, 498, 749
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 3 cut(s) 45, 122, 229
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 442
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 566
Csp6I GTAC 1 cut(s) 735
CviAII CATG 6 cut(s) 46, 200, 388, 643, 806, 898
CviQI GTAC 1 cut(s) 735
DdeI CTNAG 2 cut(s) 603, 831
DpnI GATC 7 cut(s) 111, 210, 317, 426, 935, 969, 981
DpnII GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
DraI TTTAAA 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 155, 256
EarI CTCTTC 2 cut(s) 155, 256
Eco130I CCWWGG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 498
Eco32I GATATC 2 cut(s) 157, 293
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 444, 548
EcoRV GATATC 2 cut(s) 157, 293
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 6 cut(s) 49, 203, 391, 646, 809, 901
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 1 cut(s) 552
FatI CATG 6 cut(s) 45, 199, 387, 642, 805, 897
FauI CCCGC 1 cut(s) 970
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 909
FokI GGATG 3 cut(s) 52, 109, 216
Fsp4HI GCNGC 1 cut(s) 909
FspBI CTAG 2 cut(s) 17, 234
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 909
HaeIII GGCC 3 cut(s) 44, 498, 749
HhaI GCGC 1 cut(s) 53
Hin1II CATG 6 cut(s) 49, 203, 391, 646, 809, 901
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 2 cut(s) 9, 610
HindII GTYRAC 2 cut(s) 9, 610
HinfI GANTC 6 cut(s) 137, 269, 281, 417, 545, 950
HpaI GTTAAC 1 cut(s) 610
HphI GGTGA 4 cut(s) 290, 803, 945, 959
Hpy166II GTNNAC 5 cut(s) 9, 273, 470, 610, 737
Hpy188I TCNGA 4 cut(s) 64, 315, 832, 876
Hpy188III TCNNGA 5 cut(s) 255, 401, 680, 820, 931
Hpy8I GTNNAC 5 cut(s) 9, 273, 470, 610, 737
Hpy99I CGWCG 2 cut(s) 26, 947
HpyAV CCTTC 3 cut(s) 515, 735, 763
HpyCH4III ACNGT 3 cut(s) 919, 947, 990
HpyCH4IV ACGT 3 cut(s) 463, 675, 889
HpyCH4V TGCA 4 cut(s) 476, 509, 515, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 603, 831
HpySE526I ACGT 3 cut(s) 463, 675, 889
Hsp92II CATG 6 cut(s) 49, 203, 391, 646, 809, 901
HspAI GCGC 1 cut(s) 51
KflI GGGWCCC 1 cut(s) 566
KspAI GTTAAC 1 cut(s) 610
Kzo9I GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
LguI GCTCTTC 1 cut(s) 256
LmnI GCTCC 3 cut(s) 13, 651, 721
Lsp1109I GCAGC 1 cut(s) 895
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 17, 234
MaeII ACGT 3 cut(s) 463, 675, 889
MaeIII GTNAC 1 cut(s) 118
MalI GATC 7 cut(s) 111, 210, 317, 426, 935, 969, 981
MboI GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
MboII GAAGA 8 cut(s) 49, 88, 142, 143, 190, 243, 419, 712
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 3 cut(s) 315, 424, 933
MhlI GDGCHC 1 cut(s) 886
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 6 cut(s) 243, 262, 450, 510, 536, 620
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 2 cut(s) 278, 411
MnlI CCTC 8 cut(s) 65, 158, 518, 598, 739, 826, 834, 981
Mox20I TGGCCA 1 cut(s) 44
Mph1103I ATGCAT 1 cut(s) 688
MscI TGGCCA 1 cut(s) 44
MseI TTAA 3 cut(s) 330, 534, 609
MslI CAYNNNNRTG 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 175
MspR9I CCNGG 2 cut(s) 446, 550
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 2 cut(s) 446, 550
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 45
NdeII GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
NlaIII CATG 6 cut(s) 49, 203, 391, 646, 809, 901
NlaIV GGNNCC 8 cut(s) 205, 317, 567, 568, 723, 799, 885, 935
NmuCI GTSAC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 809
PceI AGGCCT 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 256
PfeI GAWTC 4 cut(s) 137, 281, 545, 950
PkrI GCNGC 1 cut(s) 910
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 2 cut(s) 277, 411
PpsI GAGTC 2 cut(s) 277, 411
Ppu21I YACGTR 2 cut(s) 464, 890
PpuMI RGGWCCY 1 cut(s) 566
PshAI GACNNNNGTC 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 566
Psp6I CCWGG 2 cut(s) 444, 548
PspGI CCWGG 2 cut(s) 444, 548
PspN4I GGNNCC 8 cut(s) 205, 317, 567, 568, 723, 799, 885, 935
PspPI GGNCC 1 cut(s) 566
PspPPI RGGWCCY 1 cut(s) 566
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 3 cut(s) 315, 424, 933
PvuI CGATCG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 736
RsaNI GTAC 1 cut(s) 735
RseI CAYNNNNRTG 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 330, 534, 609
SatI GCNGC 1 cut(s) 909
Sau3AI GATC 7 cut(s) 109, 208, 315, 424, 933, 967, 979
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 2 cut(s) 278, 411
ScrFI CCNGG 2 cut(s) 446, 550
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 6 cut(s) 243, 262, 450, 510, 536, 620
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 1 cut(s) 963
SspMI CTAG 2 cut(s) 17, 234
StuI AGGCCT 1 cut(s) 498
StyD4I CCNGG 2 cut(s) 444, 548
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 919, 947, 990
TaiI ACGT 3 cut(s) 466, 678, 892
TaqI TCGA 4 cut(s) 153, 256, 402, 819
TaqII GACCGA 1 cut(s) 420
TasI AATT 6 cut(s) 243, 262, 450, 510, 536, 620
TfiI GAWTC 4 cut(s) 137, 281, 545, 950
Tru1I TTAA 3 cut(s) 330, 534, 609
Tru9I TTAA 3 cut(s) 330, 534, 609
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 376
TspGWI ACGGA 2 cut(s) 26, 39
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 2 cut(s) 450, 620
XceI RCATGY 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 2 cut(s) 17, 234
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.