Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013284

Physical Location & Seq

Genomic Coordinates Forward (+)

26076491 .. 26080040

Gene Structure 3550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAGACGCCGATGACACAGCTCGACGACGAAACGGTGCGCAGCATGGCCATTGGAGCCGTTTTCCCAGACTTTGGTGGGAAGATAAATTCACTGGATTTTCACCGCAAGGATGATTTACTGGTTACGGCTAGCGAGGATGATTCTGTGCGACTCTATGACATTGCAACTGCTAAGTTGCTAAAGACCACATTCCATAAGAAACATGGAGCAGATCGTATATGCTTTACCCATCACCCAAGTTCTGTTATATGCTCTTCAAAACACAATCTGGATGCCACTGGAGAATCACTGCGGTATCTGTCAATGTATGATAATCGATGCCTTCGCTACTTCAAAGGACATAAAGAGAGAATTGTTTCCCTCTGTATGTCTCCAGTCAACGATAGCTTCATGTCTGGTTCGTTGGACCACACTGTCAGAATATGGGATCTCCGTGTAAATGCCTGCCAGGGAATTTTGCATCTACGTGGTAGACCTACAGTTGCCTATGACCAGCAAGGTCTTGTTTTTGCTGTGGCAATGGAAGGGGGTGCGATTAAATTGTTTGATTCACGTTCCTACGACAAGGGTCCATTTGATACCTTTTTAGTTGGTGGAGATACTGCTGAAGTTTGTGATATCAAGTTTAGCAGTGATGGCAAATCAATGCTCTTGACAACCACAAATAACAACATCTATATTCTGGACGCATATGGAGGAGAGAAGCGCTGTGGGTACAGTTTGGAACCATCTCCTAACGTAATAATAGAGGCAACTTTTACCCCAGATGGCCAGTATGTCGTGTCAGGCTCTGGAGATGGAAACTTGCATGCCTGGAGCATCAACAAGCGGAACGAGCAGGTGGCATGCTGGAACAGTCACATTGGAGTTCCATCTTGCTTGAAGTGGGCTCCCCGCAGGGCCATGTTTGCTGCTGCATCATCTGTTCTTACCTTTTGGATACCTAACGACTCAAACGCCGAGCCGACTCGCATGGACACCGAAGCCGGTGTTGAAGCCGAGCATCCGTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048188 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048586 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0080182 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

340

Amino Acids

37.52

Weight (kDa)

6.05

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14530
fragaria_vesca	FvH4_6g51320 FvH4_6g51320
malus_domestica	MD09G1028100.v1.1
prunus_persica	Prupe.3G290600_v2.0.a1 Prupe.3G290600_v2.0.a1
pyrus_communis	pycom111g02200
rosa_chinensis	RchiOBHm_Chr2g0172941
rosa_laevigata	RLG00000022144
rosa_multiflora	Rmu_sc0029209.1_g000002 Rmu_sc0029210.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079400
rosa_rugosa	Rorug02G0563800
rosa_samantha	Rh2AG640600 Rh2BG654000 Rh2CG619700 Rh2DG667700
rosa_wichuraiana	Rw2G052880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	832
AasI	GACNNNNNNGTC	1 cut(s)	416
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	832
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	4 cut(s)	106, 295, 832, 898
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	2 cut(s)	48, 772
AcsI	RAATTY	2 cut(s)	88, 456
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	719
AfeI	AGCGCT	1 cut(s)	710
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	261, 337, 886, 998
AjnI	CCWGG	2 cut(s)	450, 815
AluBI	AGCT	2 cut(s)	22, 390
AluI	AGCT	2 cut(s)	22, 390
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	438
AlwNI	CAGNNNCTG	1 cut(s)	794
Aor51HI	AGCGCT	1 cut(s)	710
AoxI	GGCC	3 cut(s)	48, 772, 903
ApeKI	GCWGC	3 cut(s)	42, 914, 917
ApoI	RAATTY	2 cut(s)	88, 456
Asp700I	GAANNNNTTC	1 cut(s)	358
AspLEI	GCGC	2 cut(s)	42, 711
AspS9I	GGNCC	3 cut(s)	409, 572, 903
AsuHPI	GGTGA	2 cut(s)	95, 227
AsuNHI	GCTAGC	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	409, 572
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BalI	TGGCCA	2 cut(s)	50, 774
BanII	GRGCYC	1 cut(s)	895
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	54, 901, 904
BccI	CCATC	6 cut(s)	240, 632, 739, 764, 794, 883
BceAI	ACGGC	2 cut(s)	44, 144
BciT130I	CCWGG	2 cut(s)	452, 817
BciVI	GTATCC	1 cut(s)	936
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	712
BfuAI	ACCTGC	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	936
BisI	GCNGC	3 cut(s)	43, 915, 918
BlsI	GCNGC	3 cut(s)	44, 916, 919
Bme1390I	CCNGG	2 cut(s)	452, 817
Bme18I	GGWCC	2 cut(s)	409, 572
BmgT120I	GGNCC	3 cut(s)	409, 572, 903
BmiI	GGNNCC	4 cut(s)	58, 573, 729, 894
BmrFI	CCNGG	2 cut(s)	452, 817
BmsI	GCATC	6 cut(s)	265, 311, 472, 831, 929, 1015
BmtI	GCTAGC	1 cut(s)	135
BoxI	GACNNNNGTC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	4 cut(s)	303, 360, 816, 838
Bsa29I	ATCGAT	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	989
Bse1I	ACTGG	5 cut(s)	99, 126, 286, 377, 775
Bse3DI	GCAATG	2 cut(s)	162, 528
BseBI	CCWGG	2 cut(s)	452, 817
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	4 cut(s)	118, 145, 280, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	162, 528
BseNI	ACTGG	5 cut(s)	99, 126, 286, 377, 775
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	3 cut(s)	54, 901, 904
BshFI	GGCC	3 cut(s)	50, 774, 905
BshVI	ATCGAT	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	990
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	50, 774, 905
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp143I	GATC	2 cut(s)	214, 430
BspACI	CCGC	4 cut(s)	106, 295, 832, 898
BspANI	GGCC	3 cut(s)	50, 774, 905
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	58, 573, 729, 894
BspMI	ACCTGC	1 cut(s)	832
BspOI	GCTAGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	162, 528
BsrFI	RCCGGY	1 cut(s)	989
BsrI	ACTGG	5 cut(s)	99, 126, 286, 377, 775
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	2 cut(s)	214, 430
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	452, 817
Bst4CI	ACNGT	5 cut(s)	37, 418, 484, 722, 860
Bst6I	CTCTTC	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	4 cut(s)	133, 448, 813, 850
BstDEI	CTNAG	2 cut(s)	174, 1014
BstF5I	GGATG	4 cut(s)	118, 145, 280, 1006
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	2 cut(s)	42, 711
BstKTI	GATC	2 cut(s)	217, 433
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	214, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 639, 838, 911
BstNI	CCWGG	2 cut(s)	452, 817
BstNSI	RCATGY	2 cut(s)	815, 852
BstPAI	GACNNNNGTC	1 cut(s)	570
BstSCI	CCNGG	2 cut(s)	450, 815
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	54, 901, 904
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu15I	ATCGAT	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	936
BsuRI	GGCC	3 cut(s)	50, 774, 905
BsuTUI	ATCGAT	1 cut(s)	319
BtsCI	GGATG	4 cut(s)	118, 145, 280, 1006
BtsI	GCAGTG	2 cut(s)	290, 640
BtsIMutI	CAGTG	5 cut(s)	92, 279, 290, 414, 640
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	4 cut(s)	133, 448, 813, 850
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	2 cut(s)	42, 711
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	3 cut(s)	409, 572, 903
ClaI	ATCGAT	1 cut(s)	319
CseI	GACGC	2 cut(s)	16, 698
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	7 cut(s)	46, 206, 394, 812, 849, 907, 976
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	2 cut(s)	174, 1014
DpnI	GATC	2 cut(s)	216, 432
DpnII	GATC	2 cut(s)	214, 430
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	2 cut(s)	48, 772
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	895
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	409, 572
Eco47III	AGCGCT	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	630
EcoRII	CCWGG	2 cut(s)	450, 815
EcoRV	GATATC	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	895
FaeI	CATG	7 cut(s)	49, 209, 397, 815, 852, 910, 979
FatI	CATG	7 cut(s)	45, 205, 393, 811, 848, 906, 975
FauI	CCCGC	1 cut(s)	905
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	43, 915, 918
FokI	GGATG	4 cut(s)	125, 152, 287, 993
FriOI	GRGCYC	1 cut(s)	895
Fsp4HI	GCNGC	3 cut(s)	43, 915, 918
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	2 cut(s)	41, 710
GluI	GCNGC	3 cut(s)	43, 915, 918
GsuI	CTGGAG	4 cut(s)	303, 360, 816, 838
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	3 cut(s)	50, 774, 905
HapII	CCGG	1 cut(s)	990
HgaI	GACGC	2 cut(s)	16, 698
HhaI	GCGC	2 cut(s)	42, 711
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	7 cut(s)	49, 209, 397, 815, 852, 910, 979
Hin6I	GCGC	2 cut(s)	40, 709
HinP1I	GCGC	2 cut(s)	40, 709
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	6 cut(s)	143, 153, 287, 551, 953, 970
HpaII	CCGG	1 cut(s)	990
HphI	GGTGA	2 cut(s)	95, 227
Hpy166II	GTNNAC	2 cut(s)	382, 476
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	4 cut(s)	272, 655, 686, 795
Hpy8I	GTNNAC	2 cut(s)	382, 476
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	2 cut(s)	335, 521
HpyCH4III	ACNGT	5 cut(s)	37, 418, 484, 722, 860
HpyCH4IV	ACGT	3 cut(s)	469, 556, 741
HpyCH4V	TGCA	4 cut(s)	167, 463, 811, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 639, 838, 911
HpyF3I	CTNAG	2 cut(s)	174, 1014
HpySE526I	ACGT	3 cut(s)	469, 556, 741
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	7 cut(s)	49, 209, 397, 815, 852, 910, 979
HspAI	GCGC	2 cut(s)	40, 709
Kzo9I	GATC	2 cut(s)	214, 430
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	4 cut(s)	56, 209, 819, 898
Lsp1109I	GCAGC	3 cut(s)	54, 901, 904
LweI	GCATC	6 cut(s)	265, 311, 472, 831, 929, 1015
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	3 cut(s)	469, 556, 741
MaeIII	GTNAC	2 cut(s)	124, 860
MalI	GATC	2 cut(s)	216, 432
MboI	GATC	2 cut(s)	214, 430
MboII	GAAGA	3 cut(s)	16, 94, 249
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	895
MlsI	TGGCCA	2 cut(s)	50, 774
MluCI	AATT	4 cut(s)	88, 354, 456, 542
MluNI	TGGCCA	2 cut(s)	50, 774
MlyI	GAGTC	3 cut(s)	147, 947, 964
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	4 cut(s)	130, 374, 692, 745
Mox20I	TGGCCA	2 cut(s)	50, 774
MroXI	GAANNNNTTC	1 cut(s)	358
MscI	TGGCCA	2 cut(s)	50, 774
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	2 cut(s)	50, 774
MspI	CCGG	1 cut(s)	990
MspR9I	CCNGG	2 cut(s)	452, 817
MvaI	CCWGG	2 cut(s)	452, 817
MwoI	GCNNNNNNNGC	4 cut(s)	56, 639, 838, 911
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	2 cut(s)	214, 430
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	7 cut(s)	49, 209, 397, 815, 852, 910, 979
NlaIV	GGNNCC	4 cut(s)	58, 573, 729, 894
NmeAIII	GCCGAG	1 cut(s)	988
NmuCI	GTSAC	1 cut(s)	860
NsbI	TGCGCA	1 cut(s)	41
NspI	RCATGY	2 cut(s)	815, 852
PaeI	GCATGC	2 cut(s)	815, 852
PaqCI	CACCTGC	1 cut(s)	832
PciSI	GCTCTTC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	3 cut(s)	143, 287, 551
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	44, 916, 919
PleI	GAGTC	3 cut(s)	147, 947, 964
PpsI	GAGTC	3 cut(s)	147, 947, 964
Ppu21I	YACGTR	1 cut(s)	470
PshAI	GACNNNNGTC	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	450, 815
PspGI	CCWGG	2 cut(s)	450, 815
PspN4I	GGNNCC	4 cut(s)	58, 573, 729, 894
PspPI	GGNCC	3 cut(s)	409, 572, 903
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	3 cut(s)	43, 915, 918
Sau3AI	GATC	2 cut(s)	214, 430
Sau96I	GGNCC	3 cut(s)	409, 572, 903
SchI	GAGTC	3 cut(s)	147, 947, 964
ScrFI	CCNGG	2 cut(s)	452, 817
SduI	GDGCHC	1 cut(s)	895
SfaNI	GCATC	6 cut(s)	265, 311, 472, 831, 929, 1015
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	2 cut(s)	409, 572
SmiMI	CAYNNNNRTG	1 cut(s)	468
SphI	GCATGC	2 cut(s)	815, 852
Sse9I	AATT	4 cut(s)	88, 354, 456, 542
SsiI	CCGC	4 cut(s)	106, 295, 832, 898
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	450, 815
TaaI	ACNGT	5 cut(s)	37, 418, 484, 722, 860
TaiI	ACGT	3 cut(s)	472, 559, 744
TaqI	TCGA	2 cut(s)	24, 319
TasI	AATT	4 cut(s)	88, 354, 456, 542
TfiI	GAWTC	3 cut(s)	143, 287, 551
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	5 cut(s)	99, 286, 297, 421, 640
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	3 cut(s)	42, 914, 917
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	2 cut(s)	17, 382
TspGWI	ACGGA	2 cut(s)	425, 999
TspRI	CASTG	5 cut(s)	99, 286, 297, 421, 640
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	2 cut(s)	409, 572
XapI	RAATTY	2 cut(s)	88, 456
XceI	RCATGY	2 cut(s)	815, 852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.