pycom111g02200

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
1323143 .. 1326421
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02200.7

Sequence Viewer

Length: 1017 bp
ATGAAGACGTCGATGACAGAGCTCGACGACGAAACGGTGCGCAGCATGGCCATTGGCGCCGTTTTCTCGGACTTCGGTGGGAAGATAAATTCGCTTGATTTTCATCGAAAGGACGATTTACTAGTTACTGCTAGCGAGGATGATTCTGTTCGACTCTATGACATTGCAACTGCTAAGTTGATAAAGACTACATTTCATAAGAAACATGGTGCAGATCGTATATGCTTTACCCATCACCCAAGTTCTGTTATATGCTCTTCAAAACACAATCTGGATACCACCGGAGAATCGCTGCGGTATCTGTCGATGTATGATAATCGATGCCTTCGCTATTTCAAAGGACATAAAGAGAGGATTGTCTCCCTCTGTATGTCTCCGGTGAATGATAGCTTCATGTCTGGTTCATTGGACCACACCGTCAGAATATGGGATCTCCGTGTAAATGCCTGCCAGGGAATTTTACATATGCGTGGTAGACCTACAGTTGCCTATGACCAGCAAGGTCTTGTTTTTGCCGTGGCAATGGAAGGGGGTGCGATTAAATTGTTTGACTCACGCTCCTATGACAAGGGTCCATTTGACACCTTTTTAGTTGGTGGAGATACTGCTGAAGTTTGTGATATCAAATTTAGCAACGATGGCAAATCAATGTTATTGACAACCACAAACAACAATATCTATGTTCTTGATGCATATGGAGGGGAGAAGCGTTGTGGGTACAGCGTGGAACCCTCTCTGAATGTAATTATCGAGGCAACTTTTACCCCAGATGGCCAGTATGTGGTGTCAGGCTCTGGAGATGGAAATTTGCACGCCTGGAGCATCAACAACCGAAACGAGGTGGCATGCTGGGACAGTCACATCGGAGTTCCGTCATGCTTGAAGTGGGCTCCTCGCAGAGCCATGTTTGCCGCCGCATCAAGCGTTCTCACGTTTTGGATACCTAATGAAGCAAACGAGCCTACTCACATGGAGACCGAAGCTGGTGCTGCCGATCCCGAGCATCCTTCCCAGTGA

Protein Analysis

339

Amino Acids

37.4

Weight (kDa)

5.69

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013284)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
AatII GACGTC 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 781
AccI GTMKAC 1 cut(s) 475
AciI CCGC 3 cut(s) 295, 912, 915
AclWI GGATC 2 cut(s) 438, 989
AcoI YGGCCR 2 cut(s) 48, 772
AcsI RAATTY 4 cut(s) 88, 456, 626, 805
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 2 cut(s) 8, 57
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 2 cut(s) 781, 838
AgsI TTSAA 3 cut(s) 261, 337, 883
AhlI ACTAGT 1 cut(s) 121
AjnI CCWGG 2 cut(s) 450, 815
AluBI AGCT 3 cut(s) 22, 390, 983
AluI AGCT 3 cut(s) 22, 390, 983
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 364, 378, 968
AlwI GGATC 2 cut(s) 438, 989
AlwNI CAGNNNCTG 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 998
AoxI GGCC 2 cut(s) 48, 772
ApeKI GCWGC 3 cut(s) 42, 292, 989
ApoI RAATTY 4 cut(s) 88, 456, 626, 805
AspLEI GCGC 2 cut(s) 42, 59
AspS9I GGNCC 2 cut(s) 409, 572
AsuHPI GGTGA 2 cut(s) 227, 391
AsuNHI GCTAGC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 998
AvaII GGWCC 2 cut(s) 409, 572
BalI TGGCCA 2 cut(s) 50, 774
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 24, 892
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 3 cut(s) 54, 279, 976
BccI CCATC 4 cut(s) 240, 632, 764, 794
BceAI ACGGC 2 cut(s) 44, 500
BcgI CGANNNNNNTGC 2 cut(s) 968, 1002
BciT130I CCWGG 2 cut(s) 452, 817
BciVI GTATCC 2 cut(s) 268, 933
BcoDI GTCTC 3 cut(s) 364, 378, 968
BcuI ACTAGT 1 cut(s) 121
BfaI CTAG 2 cut(s) 122, 132
BfmI CTRYAG 1 cut(s) 480
BfoI RGCGCY 1 cut(s) 60
BfuI GTATCC 2 cut(s) 268, 933
BisI GCNGC 5 cut(s) 43, 293, 912, 915, 990
BlsI GCNGC 5 cut(s) 44, 294, 913, 916, 991
Bme1390I CCNGG 2 cut(s) 452, 817
Bme18I GGWCC 2 cut(s) 409, 572
BmeT110I CYCGRG 1 cut(s) 998
BmgT120I GGNCC 2 cut(s) 409, 572
BmiI GGNNCC 4 cut(s) 58, 573, 729, 891
BmrFI CCNGG 2 cut(s) 452, 817
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 5 cut(s) 311, 679, 831, 926, 1012
BmtI GCTAGC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 1006
BoxI GACNNNNGTC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 2 cut(s) 816, 838
Bsa29I ATCGAT 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 102
BsaHI GRCGYC 2 cut(s) 8, 57
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 2 cut(s) 451, 516
BsaWI WCCGGW 2 cut(s) 281, 376
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 781, 838
Bse1I ACTGG 2 cut(s) 775, 1012
Bse3DI GCAATG 2 cut(s) 162, 528
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 2 cut(s) 452, 817
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 451, 516
BseGI GGATG 2 cut(s) 145, 1003
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 781, 838
BseMI GCAATG 2 cut(s) 162, 528
BseNI ACTGG 2 cut(s) 775, 1012
BseRI GAGGAG 1 cut(s) 882
BseXI GCAGC 3 cut(s) 54, 279, 976
BseYI CCCAGC 1 cut(s) 849
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 2 cut(s) 50, 774
BshNI GGYRCC 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 998
BsiSI CCGG 2 cut(s) 282, 377
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 2 cut(s) 781, 838
BsmAI GTCTC 3 cut(s) 364, 378, 968
BsmFI GGGAC 1 cut(s) 866
BsnI GGCC 2 cut(s) 50, 774
Bso31I GGTCTC 1 cut(s) 968
BsoBI CYCGRG 1 cut(s) 998
Bsp1286I GDGCHC 2 cut(s) 24, 892
Bsp143I GATC 3 cut(s) 214, 430, 994
BspACI CCGC 3 cut(s) 295, 912, 915
BspANI GGCC 2 cut(s) 50, 774
BspDI ATCGAT 1 cut(s) 319
BspLI GGNNCC 4 cut(s) 58, 573, 729, 891
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 2 cut(s) 438, 989
BspQI GCTCTTC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 968
BsrDI GCAATG 2 cut(s) 162, 528
BsrI ACTGG 2 cut(s) 775, 1012
BssECI CCNNGG 2 cut(s) 451, 516
BssMI GATC 3 cut(s) 214, 430, 994
BssNI GRCGYC 2 cut(s) 8, 57
Bst2UI CCWGG 2 cut(s) 452, 817
Bst4CI ACNGT 4 cut(s) 37, 418, 484, 857
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 2 cut(s) 8, 57
BstC8I GCNNGC 4 cut(s) 133, 448, 813, 847
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 145, 1003
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 42, 59
BstKTI GATC 3 cut(s) 217, 433, 997
BstMAI GTCTC 3 cut(s) 364, 378, 968
BstMBI GATC 3 cut(s) 214, 430, 994
BstMWI GCNNNNNNNGC 4 cut(s) 56, 639, 908, 989
BstNI CCWGG 2 cut(s) 452, 817
BstNSI RCATGY 1 cut(s) 849
BstPAI GACNNNNGTC 1 cut(s) 570
BstSCI CCNGG 2 cut(s) 450, 815
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 54, 279, 976
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 319
BsuI GTATCC 2 cut(s) 268, 933
BsuRI GGCC 2 cut(s) 50, 774
BsuTUI ATCGAT 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 516
BtsCI GGATG 2 cut(s) 145, 1003
Cac8I GCNNGC 4 cut(s) 133, 448, 813, 847
CaiI CAGNNNCTG 1 cut(s) 794
CfoI GCGC 2 cut(s) 42, 59
Cfr13I GGNCC 2 cut(s) 409, 572
ClaI ATCGAT 1 cut(s) 319
Csp6I GTAC 1 cut(s) 718
CviAII CATG 7 cut(s) 46, 206, 394, 846, 876, 904, 970
CviJI RGCY 9 cut(s) 22, 50, 390, 774, 792, 890, 902, 961, 983
CviKI_1 RGCY 9 cut(s) 22, 50, 390, 774, 792, 890, 902, 961, 983
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 1 cut(s) 174
DinI GGCGCC 1 cut(s) 58
DpnI GATC 3 cut(s) 216, 432, 996
DpnII GATC 3 cut(s) 214, 430, 994
DrdI GACNNNNNNGTC 1 cut(s) 416
DseDI GACNNNNNNGTC 1 cut(s) 416
EaeI YGGCCR 2 cut(s) 48, 772
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 24, 892
Eco31I GGTCTC 1 cut(s) 968
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 409, 572
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 998
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 450, 815
EcoRV GATATC 1 cut(s) 622
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 2 cut(s) 24, 892
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaeI CATG 7 cut(s) 49, 209, 397, 849, 879, 907, 973
FaqI GGGAC 1 cut(s) 866
FatI CATG 7 cut(s) 45, 205, 393, 845, 875, 903, 969
FauNDI CATATG 2 cut(s) 465, 694
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 5 cut(s) 43, 293, 912, 915, 990
FokI GGATG 2 cut(s) 152, 990
FriOI GRGCYC 2 cut(s) 24, 892
Fsp4HI GCNGC 5 cut(s) 43, 293, 912, 915, 990
FspBI CTAG 2 cut(s) 122, 132
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 2 cut(s) 41, 58
GluI GCNGC 5 cut(s) 43, 293, 912, 915, 990
GsaI CCCAGC 1 cut(s) 853
GsuI CTGGAG 2 cut(s) 816, 838
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 50, 774
HapII CCGG 2 cut(s) 282, 377
HhaI GCGC 2 cut(s) 42, 59
Hin1I GRCGYC 2 cut(s) 8, 57
Hin1II CATG 7 cut(s) 49, 209, 397, 849, 879, 907, 973
Hin6I GCGC 2 cut(s) 40, 57
HinP1I GCGC 2 cut(s) 40, 57
HinfI GANTC 4 cut(s) 143, 153, 287, 551
HpaII CCGG 2 cut(s) 282, 377
HphI GGTGA 2 cut(s) 227, 391
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 4 cut(s) 70, 422, 738, 866
Hpy188III TCNNGA 4 cut(s) 272, 686, 795, 998
Hpy8I GTNNAC 1 cut(s) 476
Hpy99I CGWCG 3 cut(s) 13, 29, 32
HpyAV CCTTC 3 cut(s) 335, 521, 1017
HpyCH4III ACNGT 4 cut(s) 37, 418, 484, 857
HpyCH4IV ACGT 2 cut(s) 8, 932
HpyCH4V TGCA 4 cut(s) 167, 212, 692, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 639, 908, 989
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 8, 932
Hsp92I GRCGYC 2 cut(s) 8, 57
Hsp92II CATG 7 cut(s) 49, 209, 397, 849, 879, 907, 973
HspAI GCGC 2 cut(s) 40, 57
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 3 cut(s) 214, 430, 994
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 3 cut(s) 563, 819, 895
Lsp1109I GCAGC 3 cut(s) 54, 279, 976
LweI GCATC 5 cut(s) 311, 679, 831, 926, 1012
MaeI CTAG 2 cut(s) 122, 132
MaeII ACGT 2 cut(s) 8, 932
MaeIII GTNAC 2 cut(s) 124, 857
MalI GATC 3 cut(s) 216, 432, 996
MboI GATC 3 cut(s) 214, 430, 994
MboII GAAGA 3 cut(s) 16, 94, 249
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 24, 892
MlsI TGGCCA 2 cut(s) 50, 774
MluCI AATT 6 cut(s) 88, 456, 542, 626, 744, 805
MluNI TGGCCA 2 cut(s) 50, 774
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 147, 545
MnlI CCTC 8 cut(s) 130, 345, 374, 692, 742, 745, 832, 903
Mox20I TGGCCA 2 cut(s) 50, 774
Mph1103I ATGCAT 1 cut(s) 694
MscI TGGCCA 2 cut(s) 50, 774
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 468
Msp20I TGGCCA 2 cut(s) 50, 774
MspI CCGG 2 cut(s) 282, 377
MspR9I CCNGG 2 cut(s) 452, 817
MvaI CCWGG 2 cut(s) 452, 817
MwoI GCNNNNNNNGC 4 cut(s) 56, 639, 908, 989
NarI GGCGCC 1 cut(s) 57
NdeI CATATG 2 cut(s) 465, 694
NdeII GATC 3 cut(s) 214, 430, 994
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 7 cut(s) 49, 209, 397, 849, 879, 907, 973
NlaIV GGNNCC 4 cut(s) 58, 573, 729, 891
NmuCI GTSAC 1 cut(s) 857
NsbI TGCGCA 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 849
PaeI GCATGC 1 cut(s) 849
PciSI GCTCTTC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 143, 287
PflMI CCANNNNNTGG 1 cut(s) 781
PkrI GCNGC 5 cut(s) 44, 294, 913, 916, 991
PleI GAGTC 2 cut(s) 147, 545
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 147, 545
PshAI GACNNNNGTC 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 450, 815
PspFI CCCAGC 1 cut(s) 849
PspGI CCWGG 2 cut(s) 450, 815
PspN4I GGNNCC 4 cut(s) 58, 573, 729, 891
PspPI GGNCC 2 cut(s) 409, 572
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 5 cut(s) 43, 293, 912, 915, 990
Sau3AI GATC 3 cut(s) 214, 430, 994
Sau96I GGNCC 2 cut(s) 409, 572
SchI GAGTC 2 cut(s) 147, 545
ScrFI CCNGG 2 cut(s) 452, 817
SduI GDGCHC 2 cut(s) 24, 892
SfaNI GCATC 5 cut(s) 311, 679, 831, 926, 1012
SfcI CTRYAG 1 cut(s) 480
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 2 cut(s) 409, 572
SmiMI CAYNNNNRTG 1 cut(s) 468
SpeI ACTAGT 1 cut(s) 121
SphI GCATGC 1 cut(s) 849
Sse9I AATT 6 cut(s) 88, 456, 542, 626, 744, 805
SsiI CCGC 3 cut(s) 295, 912, 915
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 2 cut(s) 122, 132
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 450, 815
TaaI ACNGT 4 cut(s) 37, 418, 484, 857
TaiI ACGT 2 cut(s) 11, 935
TaqI TCGA 7 cut(s) 11, 24, 106, 151, 305, 319, 750
TaqII GACCGA 1 cut(s) 992
TasI AATT 6 cut(s) 88, 456, 542, 626, 744, 805
TauI GCSGC 2 cut(s) 914, 917
TfiI GAWTC 2 cut(s) 143, 287
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseFI GTSAC 1 cut(s) 857
TseI GCWGC 3 cut(s) 42, 292, 989
Tsp45I GTSAC 1 cut(s) 857
TspDTI ATGAA 6 cut(s) 17, 92, 185, 382, 393, 963
TspGWI ACGGA 2 cut(s) 425, 861
Van91I CCANNNNNTGG 1 cut(s) 781
VpaK11BI GGWCC 2 cut(s) 409, 572
XapI RAATTY 4 cut(s) 88, 456, 626, 805
XceI RCATGY 1 cut(s) 849
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 2 cut(s) 122, 132
ZraI GACGTC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.