FvH4_6g51320

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
38047327 .. 38052197
4871 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51320.t1

Sequence Viewer

Length: 1110 bp
ATGTCCTCTGCTGAGCTCCGCATTCAGTTCCATAAACCAATTCTGGTTTTGCTCTCTGTGAAAACGAAGCGGGCATTCAGAATGATGAAGACGTCATCGCTGACGGAGCTGGATGACGAAACGGTGCGCAGCATGGCCATTGGTGCCGTCTTCTCCGACTTTGGAGGAAAGATAAACTCACTCGATTTTCATCGAAAGGAGGATTTACTTGTTACTGCTAGTGAGGATGACTCTGTGCGGCTCTATGACATTGCAACTGCCAAGTTGCTAAAGACTACATATCATAAGAAACACGGAGCAGATCGCATATGCTTTACTCATCACCCAAGCTCTGTGATATGCTCTTCAAGATACAATTTGGATTCTACCGGAGAATCACTGCGGTATTTGTCAATGTATGATAACAGATGCCTTCGCTACTTCAAGGGCCATAAAGAGAGAATTGTTTCAGTCTGTATGTCTCCTATCAATGATAGCTTCATGTCTGGTTCATTGGATCACAGTGTCCGAATATGGGATCTTCGTGTAAATACATGCCAGGGAATTTTACATCTACGTGGTAGACCTACAGTGGCCTATGACCAACAAGGTCTTGTTTTCGCTGTAGCTATGGAAGGGGGTGCTATCAAATTGTTTGATTCACGCTCGTATGACAAGGGCCCATTTGATACCTTTTTAGTTGGTGGAGATACAGCTGAAGTTTGCGACATAAAATTTAGCAGCGATGGCAAATCAATGCTCCTCACCACTACAAACAATAACATCTATGTTCTTGATGCCTATGCAGGAGATAAGCGATGTGGTTACAGCGTGGAACCATCTCCAAATACGAGTATAGAGGCAACATTTACCCCAGATGGCCAGTATGTACTCTCAGGTTCTGGAGATGGAAATTTGCATGCCTGGAGCATCGACAGGCGGAATGAGGTTGCAAGCTGGAACAGCCATATTGGAGTCCCATCATGTTTAAAGTGGGCTCCTCGCAGAGCTATGTTTGCAGCTGCTTCGACTGTTCTCACCTTTTGGATACCCAACGATTCAAACGCTGCTCCTGCCGTTATGGACACTGAACCCTCGGCAGGTACCGAATCACAACATCTATTTCAATGA

Protein Analysis

370

Amino Acids

40.96

Weight (kDa)

6.63

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 48 - 249 4.3e-20 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 52 - 117 2.6e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 54 - 178 8e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 57 - 337 6.1e-36 WDR5 beta-propeller domain
WDR55 PF24796 57 - 179 3.9e-06 WDR55
Beta-prop_WDR3_2nd PF25172 58 - 336 1.1e-13 WDR3 second beta-propeller domain
Beta-prop_WDR75_1st PF23869 115 - 174 4.3e-06 WD repeat-containing protein 75 first beta-propeller
WD40_WDHD1_1st PF24817 125 - 257 4.4e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 129 - 179 1.1e-06 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 136 - 335 3.3e-22 THOC3 beta-propeller domain
WD40 PF00400 136 - 173 2.3e-07 WD domain, G-beta repeat
Beta-prop_EML PF23409 139 - 317 4.4e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta PF25391 140 - 302 3.3e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 142 - 262 2.4e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 150 - 311 3.5e-15 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 191 - 315 2.7e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 191 - 334 5.1e-08 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013284)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 95
Acc16I TGCGCA 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 1070
Acc65I GGTACC 1 cut(s) 1082
AccB1I GGYRCC 2 cut(s) 143, 1082
AccI GTMKAC 1 cut(s) 562
AciI CCGC 5 cut(s) 19, 70, 238, 382, 919
AclWI GGATC 2 cut(s) 504, 525
AcoI YGGCCR 2 cut(s) 135, 859
AcsI RAATTY 3 cut(s) 543, 713, 892
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 2 cut(s) 870, 1084
AfiI CCNNNNNNNGG 2 cut(s) 514, 1079
AgsI TTSAA 4 cut(s) 348, 424, 1041, 1106
AjnI CCWGG 2 cut(s) 537, 902
AluBI AGCT 9 cut(s) 16, 109, 330, 477, 608, 695, 936, 989, 1001
AluI AGCT 9 cut(s) 16, 109, 330, 477, 608, 695, 936, 989, 1001
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 2 cut(s) 504, 525
AlwNI CAGNNNCTG 1 cut(s) 881
AoxI GGCC 5 cut(s) 135, 427, 573, 658, 859
ApaI GGGCCC 1 cut(s) 662
ApeKI GCWGC 5 cut(s) 129, 720, 998, 1001, 1046
ApoI RAATTY 3 cut(s) 543, 713, 892
Asp700I GAANNNNTTC 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 1082
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 3 cut(s) 427, 658, 659
AsuHPI GGTGA 3 cut(s) 314, 736, 1009
BaeGI GKGCMC 1 cut(s) 662
BalI TGGCCA 2 cut(s) 137, 861
BanI GGYRCC 2 cut(s) 143, 1082
BanII GRGCYC 3 cut(s) 18, 662, 979
BbsI GAAGAC 2 cut(s) 95, 142
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 5 cut(s) 141, 732, 988, 1010, 1033
BccI CCATC 5 cut(s) 719, 826, 851, 881, 967
BceAI ACGGC 2 cut(s) 131, 1040
BcgI CGANNNNNNTGC 2 cut(s) 987, 1021
BciT130I CCWGG 2 cut(s) 539, 904
BciVI GTATCC 1 cut(s) 1020
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 567, 603
BfuAI ACCTGC 1 cut(s) 1070
BfuI GTATCC 1 cut(s) 1020
BisI GCNGC 6 cut(s) 130, 239, 721, 999, 1002, 1047
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 6 cut(s) 131, 240, 722, 1000, 1003, 1048
Bme1390I CCNGG 2 cut(s) 539, 904
BmgT120I GGNCC 3 cut(s) 427, 658, 659
BmiI GGNNCC 5 cut(s) 145, 660, 816, 978, 1084
BmrFI CCNGG 2 cut(s) 539, 904
BmsI GCATC 3 cut(s) 398, 766, 918
BpiI GAAGAC 2 cut(s) 95, 142
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 2 cut(s) 903, 925
Bpu1102I GCTNAGC 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 538, 1074
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 1079
Bse1I ACTGG 1 cut(s) 862
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 2 cut(s) 539, 904
BseDI CCNNGG 2 cut(s) 538, 1074
BseGI GGATG 2 cut(s) 118, 232
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 514, 1079
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 888
BseNI ACTGG 1 cut(s) 862
BseRI GAGGAG 2 cut(s) 731, 969
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 5 cut(s) 141, 732, 988, 1010, 1033
BshFI GGCC 5 cut(s) 137, 429, 575, 660, 861
BshNI GGYRCC 2 cut(s) 143, 1082
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 514, 1079
BsmAI GTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 2 cut(s) 21, 74
BsnI GGCC 5 cut(s) 137, 429, 575, 660, 861
Bsp120I GGGCCC 1 cut(s) 658
Bsp1286I GDGCHC 3 cut(s) 18, 662, 979
Bsp143I GATC 3 cut(s) 301, 496, 517
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 5 cut(s) 19, 70, 238, 382, 919
BspANI GGCC 5 cut(s) 137, 429, 575, 660, 861
BspCNI CTCAG 2 cut(s) 4, 887
BspLI GGNNCC 5 cut(s) 145, 660, 816, 978, 1084
BspMI ACCTGC 1 cut(s) 1070
BspPI GGATC 2 cut(s) 504, 525
BspQI GCTCTTC 1 cut(s) 349
BspT107I GGYRCC 2 cut(s) 143, 1082
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 862
BssECI CCNNGG 2 cut(s) 538, 1074
BssMI GATC 3 cut(s) 301, 496, 517
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 539, 904
Bst4CI ACNGT 4 cut(s) 124, 503, 571, 1012
Bst6I CTCTTC 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 3 cut(s) 72, 900, 934
BstDEI CTNAG 2 cut(s) 12, 874
BstF5I GGATG 2 cut(s) 118, 232
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 304, 499, 520
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 3 cut(s) 301, 496, 517
BstMWI GCNNNNNNNGC 6 cut(s) 106, 143, 726, 942, 995, 1052
BstNI CCWGG 2 cut(s) 539, 904
BstNSI RCATGY 2 cut(s) 537, 902
BstSCI CCNGG 2 cut(s) 537, 902
BstSFI CTRYAG 2 cut(s) 567, 603
BstSLI GKGCMC 1 cut(s) 662
BstV1I GCAGC 5 cut(s) 141, 732, 988, 1010, 1033
BstV2I GAAGAC 2 cut(s) 95, 142
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuI GTATCC 1 cut(s) 1020
BsuRI GGCC 5 cut(s) 137, 429, 575, 660, 861
BtgZI GCGATG 3 cut(s) 81, 738, 811
BtsCI GGATG 2 cut(s) 118, 232
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 4 cut(s) 377, 508, 576, 1065
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 3 cut(s) 72, 900, 934
CaiI CAGNNNCTG 1 cut(s) 881
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 3 cut(s) 427, 658, 659
Csp6I GTAC 2 cut(s) 869, 1083
CviAII CATG 5 cut(s) 133, 481, 534, 899, 963
CviQI GTAC 2 cut(s) 869, 1083
DdeI CTNAG 2 cut(s) 12, 874
DpnI GATC 3 cut(s) 303, 498, 519
DpnII GATC 3 cut(s) 301, 496, 517
DraI TTTAAA 1 cut(s) 969
EaeI YGGCCR 2 cut(s) 135, 859
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
EciI GGCGGA 1 cut(s) 934
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 3 cut(s) 18, 662, 979
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 717
EcoICRI GAGCTC 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 2 cut(s) 537, 902
EcoT38I GRGCYC 3 cut(s) 18, 662, 979
FaeI CATG 5 cut(s) 136, 484, 537, 902, 966
FaqI GGGAC 1 cut(s) 941
FatI CATG 5 cut(s) 132, 480, 533, 898, 962
FauI CCCGC 1 cut(s) 63
FauNDI CATATG 1 cut(s) 308
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 6 cut(s) 130, 239, 721, 999, 1002, 1047
FokI GGATG 2 cut(s) 125, 239
FriOI GRGCYC 3 cut(s) 18, 662, 979
Fsp4HI GCNGC 6 cut(s) 130, 239, 721, 999, 1002, 1047
FspBI CTAG 1 cut(s) 219
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 1 cut(s) 128
GluI GCNGC 6 cut(s) 130, 239, 721, 999, 1002, 1047
GsuI CTGGAG 2 cut(s) 903, 925
HaeIII GGCC 5 cut(s) 137, 429, 575, 660, 861
HapII CCGG 1 cut(s) 369
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 5 cut(s) 136, 484, 537, 902, 966
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 7 cut(s) 230, 362, 374, 638, 954, 1037, 1088
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 314, 736, 1009
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 3 cut(s) 80, 157, 509
Hpy188III TCNNGA 3 cut(s) 348, 773, 882
Hpy8I GTNNAC 1 cut(s) 563
HpyAV CCTTC 2 cut(s) 422, 608
HpyCH4III ACNGT 4 cut(s) 124, 503, 571, 1012
HpyCH4IV ACGT 2 cut(s) 92, 556
HpyCH4V TGCA 5 cut(s) 254, 785, 898, 932, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 106, 143, 726, 942, 995, 1052
HpyF3I CTNAG 2 cut(s) 12, 874
HpySE526I ACGT 2 cut(s) 92, 556
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 5 cut(s) 136, 484, 537, 902, 966
HspAI GCGC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 1086
Kzo9I GATC 3 cut(s) 301, 496, 517
LguI GCTCTTC 1 cut(s) 349
LmnI GCTCC 7 cut(s) 21, 106, 296, 744, 906, 982, 1054
Lsp1109I GCAGC 5 cut(s) 141, 732, 988, 1010, 1033
LweI GCATC 3 cut(s) 398, 766, 918
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 92, 556
MaeIII GTNAC 2 cut(s) 211, 803
MalI GATC 3 cut(s) 303, 498, 519
MboI GATC 3 cut(s) 301, 496, 517
MboII GAAGA 4 cut(s) 100, 142, 336, 512
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 3 cut(s) 18, 662, 979
MlsI TGGCCA 2 cut(s) 137, 861
MluCI AATT 7 cut(s) 39, 355, 441, 543, 629, 713, 892
MluNI TGGCCA 2 cut(s) 137, 861
MlyI GAGTC 2 cut(s) 224, 963
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 9 cut(s) 16, 158, 193, 217, 752, 832, 919, 990, 1084
Mox20I TGGCCA 2 cut(s) 137, 861
MroXI GAANNNNTTC 1 cut(s) 445
MscI TGGCCA 2 cut(s) 137, 861
MseI TTAA 1 cut(s) 968
MslI CAYNNNNRTG 1 cut(s) 555
Msp20I TGGCCA 2 cut(s) 137, 861
MspA1I CMGCKG 2 cut(s) 695, 1001
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 2 cut(s) 539, 904
Mva1269I GAATGC 2 cut(s) 21, 74
MvaI CCWGG 2 cut(s) 539, 904
MwoI GCNNNNNNNGC 6 cut(s) 106, 143, 726, 942, 995, 1052
NdeI CATATG 1 cut(s) 308
NdeII GATC 3 cut(s) 301, 496, 517
NlaIII CATG 5 cut(s) 136, 484, 537, 902, 966
NlaIV GGNNCC 5 cut(s) 145, 660, 816, 978, 1084
NmeAIII GCCGAG 1 cut(s) 1055
NsbI TGCGCA 1 cut(s) 128
NspI RCATGY 2 cut(s) 537, 902
PaeI GCATGC 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 349
PctI GAATGC 2 cut(s) 21, 74
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 5 cut(s) 362, 374, 638, 1037, 1088
PkrI GCNGC 6 cut(s) 131, 240, 722, 1000, 1003, 1048
PleI GAGTC 2 cut(s) 224, 962
PpsI GAGTC 2 cut(s) 224, 962
Ppu21I YACGTR 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 537, 902
PspGI CCWGG 2 cut(s) 537, 902
PspN4I GGNNCC 5 cut(s) 145, 660, 816, 978, 1084
PspOMI GGGCCC 1 cut(s) 658
PspPI GGNCC 3 cut(s) 427, 658, 659
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 1 cut(s) 517
PvuII CAGCTG 2 cut(s) 695, 1001
RsaI GTAC 2 cut(s) 870, 1084
RsaNI GTAC 2 cut(s) 869, 1083
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 968
SatI GCNGC 6 cut(s) 130, 239, 721, 999, 1002, 1047
Sau3AI GATC 3 cut(s) 301, 496, 517
Sau96I GGNCC 3 cut(s) 427, 658, 659
SchI GAGTC 2 cut(s) 224, 963
ScrFI CCNGG 2 cut(s) 539, 904
SduI GDGCHC 3 cut(s) 18, 662, 979
SfaNI GCATC 3 cut(s) 398, 766, 918
SfcI CTRYAG 2 cut(s) 567, 603
SmiMI CAYNNNNRTG 1 cut(s) 555
SphI GCATGC 1 cut(s) 902
Sse9I AATT 7 cut(s) 39, 355, 441, 543, 629, 713, 892
SsiI CCGC 5 cut(s) 19, 70, 238, 382, 919
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 537, 902
TaaI ACNGT 4 cut(s) 124, 503, 571, 1012
TaiI ACGT 2 cut(s) 95, 559
TaqI TCGA 4 cut(s) 183, 193, 912, 1007
TasI AATT 7 cut(s) 39, 355, 441, 543, 629, 713, 892
TatI WGTACW 1 cut(s) 868
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 5 cut(s) 362, 374, 638, 1037, 1088
Tru1I TTAA 1 cut(s) 968
Tru9I TTAA 1 cut(s) 968
TscAI CASTG 4 cut(s) 384, 508, 576, 1072
TseI GCWGC 5 cut(s) 129, 720, 998, 1001, 1046
TspDTI ATGAA 4 cut(s) 101, 179, 469, 480
TspGWI ACGGA 2 cut(s) 119, 309
TspRI CASTG 4 cut(s) 384, 508, 576, 1072
XapI RAATTY 3 cut(s) 543, 713, 892
XceI RCATGY 2 cut(s) 537, 902
XmiI GTMKAC 1 cut(s) 562
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 219
ZraI GACGTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.