AT5G15230

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016513
Physical Location & Seq
Forward (+)
4944816 .. 4946299
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15230.1

Sequence Viewer

Length: 321 bp
ATGGCTAAGTCATATGGAGCTATCTTCCTCTTGACCCTCATTGTCCTCTTCATGCTTCAAACCATGGTTATGGCCTCAAGTGGATCTAATGTGAAGTGGAGCCAGAAACGTTATGGACCAGGAAGCCTGAAACGTACCCAATGCCCATCGGAATGTGATAGGAGGTGTAAAAAGACACAGTACCACAAGGCTTGCATTACGTTCTGCAACAAATGCTGCAGGAAGTGTCTCTGTGTGCCTCCGGGTTACTATGGGAACAAACAAGTTTGCTCCTGCTACAACAACTGGAAAACTCAAGAGGGTGGACCAAAATGCCCTTGA

Protein Analysis

106

Amino Acids

12.0

Weight (kDa)

9.46

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 47 - 106 3e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016513)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15230 AT5G15230
fragaria_vesca FvH4_6g48590
malus_domestica MD09G1051300.v1.1 MD17G1041500.v1.1
prunus_persica Prupe.3G267600_v2.0.a1
pyrus_communis pycom111g04250 pycom17g04610
rosa_chinensis RchiOBHm_Chr2g0168411
rosa_laevigata RLG00000021780
rosa_multiflora Rmu_sc0002789.1_g000002 Rmu_sc0012607.1_g000003
rosa_rugosa Rorug02G0533800
rosa_wichuraiana Rw2G050040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 109
AclWI GGATC 1 cut(s) 91
AfaI GTAC 2 cut(s) 136, 182
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 116, 305
AsuC2I CCSGG 1 cut(s) 243
AvaII GGWCC 2 cut(s) 116, 305
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 120, 243
Bme18I GGWCC 2 cut(s) 116, 305
BmgT120I GGNCC 2 cut(s) 116, 305
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 120, 243
BpuEI CTTGAG 2 cut(s) 61, 279
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 83
Bsp19I CCATGG 1 cut(s) 63
BspANI GGCC 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 101
BspMAI CTGCAG 1 cut(s) 221
BspPI GGATC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 118, 241
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 116, 305
Csp6I GTAC 2 cut(s) 135, 181
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 2 cut(s) 52, 64
CviJI RGCY 6 cut(s) 5, 20, 74, 102, 126, 191
CviKI_1 RGCY 6 cut(s) 5, 20, 74, 102, 126, 191
CviQI GTAC 2 cut(s) 135, 181
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 116, 305
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 55, 67
FaiI YATR 7 cut(s) 13, 15, 53, 65, 71, 114, 252
FatI CATG 2 cut(s) 51, 63
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 242
Hin1II CATG 2 cut(s) 55, 67
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 31, 296
Hpy8I GTNNAC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 109, 133, 200
HpyCH4V TGCA 3 cut(s) 195, 207, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 3 cut(s) 109, 133, 200
Hsp92II CATG 2 cut(s) 55, 67
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 17, 99, 275
LpnPI CCDG 8 cut(s) 105, 116, 132, 140, 205, 255, 271, 286
Lsp1109I GCAGC 1 cut(s) 203
MaeII ACGT 3 cut(s) 109, 133, 200
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 2 cut(s) 16, 40
MflI RGATCY 1 cut(s) 83
MnlI CCTC 7 cut(s) 38, 47, 56, 85, 156, 249, 292
MslI CAYNNNNRTG 2 cut(s) 68, 151
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 120, 243
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 213
NciI CCSGG 1 cut(s) 243
NcoI CCATGG 1 cut(s) 63
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 83
NlaIII CATG 2 cut(s) 55, 67
NlaIV GGNNCC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 218
Psp1406I AACGTT 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 2 cut(s) 116, 305
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 2 cut(s) 136, 182
RsaNI GTAC 2 cut(s) 135, 181
RseI CAYNNNNRTG 2 cut(s) 68, 151
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 83
Sau96I GGNCC 2 cut(s) 116, 305
ScrFI CCNGG 2 cut(s) 120, 243
SetI ASST 5 cut(s) 22, 112, 136, 167, 203
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 2 cut(s) 116, 305
SmiMI CAYNNNNRTG 2 cut(s) 68, 151
SmlI CTYRAG 2 cut(s) 76, 294
SmoI CTYRAG 2 cut(s) 76, 294
StyD4I CCNGG 2 cut(s) 118, 241
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 3 cut(s) 112, 136, 203
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 116, 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.