Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0016513

Physical Location & Seq

Genomic Coordinates Forward (+)

2588281 .. 2589399

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04250.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTCATTGATTTTCTAACTCCCCCTTTCTTCTCTTCCTGTTCACATCTCCCTCCTCTTGCCCCTGGGGTTAGTTTCGCCATTAGGAGGGACTTGTCTGTAACAATGGCCATGGCTAAGTTCTTTGCTGCCTTGTTCTTGGCTCTCCTTGCCATCTCCATGCTTCAAACCATGGTTATGGCAGATCATGGGCATGGAGGTCATCACAAGGGCAATAATGCATATGGACCTGGGAGTCTCAAGAGCAGCCAATGCCCGTCGCAATGCACGAGGAGGTGCAGCCAGACGCAGTACCACAAGCCCTGCATGTTCTTCTGTCAGAAATGCTGCAAGAAGTGCCTGTGTGTACCCCCTGGATTTTACGGGAACAAGGCTGTGTGTCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCCAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0019725 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

144

Amino Acids

15.69

Weight (kDa)

9.21

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15230 AT5G15230
fragaria_vesca	FvH4_6g48590
malus_domestica	MD09G1051300.v1.1 MD17G1041500.v1.1
prunus_persica	Prupe.3G267600_v2.0.a1
pyrus_communis	pycom111g04250 pycom17g04610
rosa_chinensis	RchiOBHm_Chr2g0168411
rosa_laevigata	RLG00000021780
rosa_multiflora	Rmu_sc0002789.1_g000002 Rmu_sc0012607.1_g000003
rosa_rugosa	Rorug02G0533800
rosa_wichuraiana	Rw2G050040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	108
AfaI	GTAC	2 cut(s)	293, 348
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	3 cut(s)	64, 229, 352
Alw26I	GTCTC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	4 cut(s)	128, 246, 279, 327
AspS9I	GGNCC	2 cut(s)	227, 416
AvaII	GGWCC	2 cut(s)	227, 416
BaeGI	GKGCMC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	110
BauI	CACGAG	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	4 cut(s)	115, 258, 291, 314
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	3 cut(s)	66, 231, 354
BcoDI	GTCTC	1 cut(s)	242
BisI	GCNGC	4 cut(s)	129, 247, 280, 328
BlsI	GCNGC	4 cut(s)	130, 248, 281, 329
Bme1390I	CCNGG	3 cut(s)	66, 231, 354
Bme18I	GGWCC	2 cut(s)	227, 416
BmgT120I	GGNCC	2 cut(s)	227, 416
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	3 cut(s)	66, 231, 354
BpiI	GAAGAC	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	6 cut(s)	64, 65, 111, 171, 230, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	3 cut(s)	66, 231, 354
BseDI	CCNNGG	6 cut(s)	64, 65, 111, 171, 230, 352
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	45, 286
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	115, 258, 291, 314
BseYI	CCCAGC	1 cut(s)	405
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	184
Bsp19I	CCATGG	2 cut(s)	111, 171
BspANI	GGCC	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	6 cut(s)	64, 65, 111, 171, 230, 352
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	268
BssT1I	CCWWGG	2 cut(s)	111, 171
Bst2BI	CACGAG	1 cut(s)	268
Bst2UI	CCWGG	3 cut(s)	66, 231, 354
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	2 cut(s)	252, 336
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	2 cut(s)	111, 171
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 252, 336
BstNI	CCWGG	3 cut(s)	66, 231, 354
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	64, 229, 352
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	4 cut(s)	115, 258, 291, 314
BstV2I	GAAGAC	1 cut(s)	407
BstXI	CCANNNNNNTGG	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	2 cut(s)	111, 171
Cfr13I	GGNCC	2 cut(s)	227, 416
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	292, 347
CviAII	CATG	6 cut(s)	112, 160, 172, 188, 194, 307
CviJI	RGCY	7 cut(s)	110, 116, 143, 249, 282, 301, 374
CviKI_1	RGCY	7 cut(s)	110, 116, 143, 249, 282, 301, 374
CviQI	GTAC	2 cut(s)	292, 347
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DrdI	GACNNNNNNGTC	1 cut(s)	234
DseDI	GACNNNNNNGTC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	111, 171
Eco47I	GGWCC	2 cut(s)	227, 416
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	3 cut(s)	64, 229, 352
EcoT14I	CCWWGG	2 cut(s)	111, 171
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	111, 171
FaeI	CATG	6 cut(s)	115, 163, 175, 191, 197, 310
FaiI	YATR	9 cut(s)	113, 161, 173, 179, 189, 195, 223, 225, 308
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	111, 159, 171, 187, 193, 306
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	129, 247, 280, 328
Fsp4HI	GCNGC	4 cut(s)	129, 247, 280, 328
GluI	GCNGC	4 cut(s)	129, 247, 280, 328
GsaI	CCCAGC	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	110
HgaI	GACGC	1 cut(s)	295
Hin1II	CATG	6 cut(s)	115, 163, 175, 191, 197, 310
HinfI	GANTC	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	44, 347
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	44, 347
Hpy99I	CGWCG	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	221, 267, 279, 306, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 252, 336
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	115, 163, 175, 191, 197, 310
Kzo9I	GATC	1 cut(s)	184
Lsp1109I	GCAGC	4 cut(s)	115, 258, 291, 314
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	4 cut(s)	22, 27, 304, 412
MhlI	GDGCHC	1 cut(s)	428
MlsI	TGGCCA	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	63, 66, 81, 191, 264, 267, 407
Mox20I	TGGCCA	1 cut(s)	110
Mph1103I	ATGCAT	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	110
MslI	CAYNNNNRTG	3 cut(s)	158, 176, 192
Msp20I	TGGCCA	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	66, 231, 354
MvaI	CCWGG	3 cut(s)	66, 231, 354
MwoI	GCNNNNNNNGC	3 cut(s)	149, 252, 336
NcoI	CCATGG	2 cut(s)	111, 171
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	6 cut(s)	115, 163, 175, 191, 197, 310
NlaIV	GGNNCC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	1 cut(s)	310
PasI	CCCWGGG	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	130, 248, 281, 329
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	3 cut(s)	64, 229, 352
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	3 cut(s)	64, 229, 352
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	227, 416
PspPPI	RGGWCCY	1 cut(s)	416
RsaI	GTAC	2 cut(s)	293, 348
RsaNI	GTAC	2 cut(s)	292, 347
RseI	CAYNNNNRTG	3 cut(s)	158, 176, 192
SatI	GCNGC	4 cut(s)	129, 247, 280, 328
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	227, 416
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	66, 231, 354
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	3 cut(s)	202, 232, 278
SinI	GGWCC	2 cut(s)	227, 416
SmiMI	CAYNNNNRTG	3 cut(s)	158, 176, 192
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	64, 229, 352
StyI	CCWWGG	2 cut(s)	111, 171
TseI	GCWGC	4 cut(s)	128, 246, 279, 327
VpaK11BI	GGWCC	2 cut(s)	227, 416
XceI	RCATGY	1 cut(s)	310
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.