Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016513

Physical Location & Seq

Genomic Coordinates Forward (+)

3433034 .. 3434511

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1051300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCCATGGCTAAGTTCTTTGCTGCCTTGTTCTTGGCTTTCCTTGCCATCTCCATGCTTCAAACCATGGTTATGGCAAATCATGGGCATGGAGGCCAGCACAAGGGCAATAATGCATATGGACCTGGGAGTCTCAAGAGCAGCCAATGCCCGTCACAATGCACGAGGAGGTGCAGCCAGACGCAGTACCACAAGCCCTGCATGTTCTTCTGTCAGAAATGCTGCAAGAAGTGCCTGTGTGTACCCCCTGGGTTTTACGGGAACAAGGCTGTGTGCCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCCAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0019725 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

109

Amino Acids

11.9

Weight (kDa)

9.36

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	49 - 108	5.1e-23	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15230 AT5G15230
fragaria_vesca	FvH4_6g48590
malus_domestica	MD09G1051300.v1.1 MD17G1041500.v1.1
prunus_persica	Prupe.3G267600_v2.0.a1
pyrus_communis	pycom111g04250 pycom17g04610
rosa_chinensis	RchiOBHm_Chr2g0168411
rosa_laevigata	RLG00000021780
rosa_multiflora	Rmu_sc0002789.1_g000002 Rmu_sc0012607.1_g000003
rosa_rugosa	Rorug02G0533800
rosa_wichuraiana	Rw2G050040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	188, 243
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	124, 247
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	3, 94
ApeKI	GCWGC	4 cut(s)	23, 141, 174, 222
AspS9I	GGNCC	2 cut(s)	122, 311
AvaII	GGWCC	2 cut(s)	122, 311
BaeGI	GKGCMC	2 cut(s)	278, 323
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	10, 153, 186, 209
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	126, 249
BcoDI	GTCTC	1 cut(s)	137
BisI	GCNGC	4 cut(s)	24, 142, 175, 223
BlsI	GCNGC	4 cut(s)	25, 143, 176, 224
Bme1390I	CCNGG	2 cut(s)	126, 249
Bme18I	GGWCC	2 cut(s)	122, 311
BmgT120I	GGNCC	2 cut(s)	122, 311
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	126, 249
BpiI	GAAGAC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	5 cut(s)	6, 66, 125, 247, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	126, 249
BseDI	CCNNGG	5 cut(s)	6, 66, 125, 247, 248
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	181
BseSI	GKGCMC	2 cut(s)	278, 323
BseXI	GCAGC	4 cut(s)	10, 153, 186, 209
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	5, 96
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	5, 96
Bsp1286I	GDGCHC	2 cut(s)	278, 323
Bsp19I	CCATGG	2 cut(s)	6, 66
BspANI	GGCC	2 cut(s)	5, 96
BspLI	GGNNCC	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	5 cut(s)	6, 66, 125, 247, 248
BssSI	CACGAG	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	6, 66
Bst2BI	CACGAG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	126, 249
BstAPI	GCANNNNNTGC	2 cut(s)	147, 231
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	2 cut(s)	6, 66
BstMAI	GTCTC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 147, 231
BstNI	CCWGG	2 cut(s)	126, 249
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	124, 247
BstSLI	GKGCMC	2 cut(s)	278, 323
BstV1I	GCAGC	4 cut(s)	10, 153, 186, 209
BstV2I	GAAGAC	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	5, 96
BtgI	CCRYGG	2 cut(s)	6, 66
Cac8I	GCNNGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	122, 311
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	187, 242
CviAII	CATG	6 cut(s)	7, 55, 67, 83, 89, 202
CviJI	RGCY	8 cut(s)	5, 11, 38, 96, 144, 177, 196, 269
CviKI_1	RGCY	8 cut(s)	5, 11, 38, 96, 144, 177, 196, 269
CviQI	GTAC	2 cut(s)	187, 242
DdeI	CTNAG	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	6, 66
Eco47I	GGWCC	2 cut(s)	122, 311
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	124, 247
EcoT14I	CCWWGG	2 cut(s)	6, 66
EcoT22I	ATGCAT	1 cut(s)	118
ErhI	CCWWGG	2 cut(s)	6, 66
FaeI	CATG	6 cut(s)	10, 58, 70, 86, 92, 205
FaiI	YATR	9 cut(s)	8, 56, 68, 74, 84, 90, 118, 120, 203
FatI	CATG	6 cut(s)	6, 54, 66, 82, 88, 201
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	4 cut(s)	24, 142, 175, 223
Fsp4HI	GCNGC	4 cut(s)	24, 142, 175, 223
GluI	GCNGC	4 cut(s)	24, 142, 175, 223
GsaI	CCCAGC	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	5, 96
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	6 cut(s)	10, 58, 70, 86, 92, 205
HinfI	GANTC	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	242
HpyCH4V	TGCA	5 cut(s)	116, 162, 174, 201, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 147, 231
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	6 cut(s)	10, 58, 70, 86, 92, 205
Lsp1109I	GCAGC	4 cut(s)	10, 153, 186, 209
MaeIII	GTNAC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	199, 307
MhlI	GDGCHC	2 cut(s)	278, 323
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	86, 159, 162, 302
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	3 cut(s)	53, 71, 87
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	126, 249
MvaI	CCWGG	2 cut(s)	126, 249
MwoI	GCNNNNNNNGC	3 cut(s)	44, 147, 231
NcoI	CCATGG	2 cut(s)	6, 66
NdeI	CATATG	1 cut(s)	118
NlaIII	CATG	6 cut(s)	10, 58, 70, 86, 92, 205
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	205
PasI	CCCWGGG	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	25, 143, 176, 224
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	2 cut(s)	124, 247
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	2 cut(s)	124, 247
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	122, 311
PspPPI	RGGWCCY	1 cut(s)	311
RsaI	GTAC	2 cut(s)	188, 243
RsaNI	GTAC	2 cut(s)	187, 242
RseI	CAYNNNNRTG	3 cut(s)	53, 71, 87
SatI	GCNGC	4 cut(s)	24, 142, 175, 223
Sau96I	GGNCC	2 cut(s)	122, 311
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	126, 249
SduI	GDGCHC	2 cut(s)	278, 323
SetI	ASST	2 cut(s)	127, 173
SinI	GGWCC	2 cut(s)	122, 311
SmiMI	CAYNNNNRTG	3 cut(s)	53, 71, 87
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	124, 247
StyI	CCWWGG	2 cut(s)	6, 66
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	4 cut(s)	23, 141, 174, 222
Tsp45I	GTSAC	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	122, 311
XceI	RCATGY	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.