Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002789.1

Orthogroup ID

OG0016513

Physical Location & Seq

Genomic Coordinates Forward (+)

5657 .. 8152

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002789.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggtgaggcccaaccgagacgtgcatcccgtagccttatgttcaagctacgctatggaggggttaggtttgtctgtagcaatggcgacggtcaagtttgttgctgctttgatcttgtcactccttgcaatctccatgctccaaaccatggttatggcaaaccatggccatggaggtcaccacaaaggcaataatcaatatggaccagggagtctcaagagctaccaatgcccatcacagtgcacgaggaggtgcagccagacccaataccacaagccctgcatgtttttctgccagaaatgctgcagcaagtgcctctgtgtgcctccagggtactatggaaacaaggctgtgtgcccttgctacaacaactggaagaccaaggaaggaggaccaaaatgcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0019725 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

135

Amino Acids

14.77

Weight (kDa)

9.17

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15230 AT5G15230
fragaria_vesca	FvH4_6g48590
malus_domestica	MD09G1051300.v1.1 MD17G1041500.v1.1
prunus_persica	Prupe.3G267600_v2.0.a1
pyrus_communis	pycom111g04250 pycom17g04610
rosa_chinensis	RchiOBHm_Chr2g0168411
rosa_laevigata	RLG00000021780
rosa_multiflora	Rmu_sc0002789.1_g000002 Rmu_sc0012607.1_g000003
rosa_rugosa	Rorug02G0533800
rosa_wichuraiana	Rw2G050040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	166
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	205, 328
AluBI	AGCT	2 cut(s)	48, 222
AluI	AGCT	2 cut(s)	48, 222
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	12, 218
Alw44I	GTGCAC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	8, 166
ApaLI	GTGCAC	1 cut(s)	241
ApeKI	GCWGC	4 cut(s)	104, 255, 303, 306
AspS9I	GGNCC	3 cut(s)	9, 203, 392
AsuHPI	GGTGA	2 cut(s)	16, 170
AvaII	GGWCC	2 cut(s)	203, 392
BaeGI	GKGCMC	2 cut(s)	245, 359
BalI	TGGCCA	1 cut(s)	168
BauI	CACGAG	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	91, 267, 290, 318
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	207, 330
BcoDI	GTCTC	2 cut(s)	12, 218
BfmI	CTRYAG	2 cut(s)	75, 304
BisI	GCNGC	4 cut(s)	105, 256, 304, 307
BlsI	GCNGC	4 cut(s)	106, 257, 305, 308
Bme1390I	CCNGG	2 cut(s)	207, 330
Bme18I	GGWCC	2 cut(s)	203, 392
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	9, 203, 392
BmrFI	CCNGG	2 cut(s)	207, 330
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	6 cut(s)	147, 163, 169, 206, 329, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	207, 330
BseDI	CCNNGG	6 cut(s)	147, 163, 169, 206, 329, 381
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	262
BseSI	GKGCMC	2 cut(s)	245, 359
BseXI	GCAGC	4 cut(s)	91, 267, 290, 318
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	10, 168
BsiHKAI	GWGCWC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	12, 218
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	10, 168
Bsp1286I	GDGCHC	2 cut(s)	245, 359
Bsp143I	GATC	1 cut(s)	111
Bsp19I	CCATGG	3 cut(s)	147, 163, 169
BspANI	GGCC	2 cut(s)	10, 168
BspMAI	CTGCAG	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	6 cut(s)	147, 163, 169, 206, 329, 381
BssMI	GATC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	4 cut(s)	147, 163, 169, 381
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	207, 330
Bst4CI	ACNGT	2 cut(s)	91, 240
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstDSI	CCRYGG	3 cut(s)	147, 163, 169
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	12, 218
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 300, 312
BstNI	CCWGG	2 cut(s)	207, 330
BstNSI	RCATGY	1 cut(s)	286
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	205, 328
BstSFI	CTRYAG	2 cut(s)	75, 304
BstSLI	GKGCMC	2 cut(s)	245, 359
BstV1I	GCAGC	4 cut(s)	91, 267, 290, 318
BstV2I	GAAGAC	1 cut(s)	383
BstXI	CCANNNNNNTGG	2 cut(s)	154, 170
BsuRI	GGCC	2 cut(s)	10, 168
BtgI	CCRYGG	3 cut(s)	147, 163, 169
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	245
Cfr13I	GGNCC	3 cut(s)	9, 203, 392
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	5 cut(s)	136, 148, 164, 170, 283
CviJI	RGCY	8 cut(s)	10, 35, 48, 168, 222, 258, 277, 350
CviKI_1	RGCY	8 cut(s)	10, 35, 48, 168, 222, 258, 277, 350
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	210
DseDI	GACNNNNNNGTC	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	166
Eco130I	CCWWGG	4 cut(s)	147, 163, 169, 381
Eco47I	GGWCC	2 cut(s)	203, 392
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	205, 328
EcoT14I	CCWWGG	4 cut(s)	147, 163, 169, 381
ErhI	CCWWGG	4 cut(s)	147, 163, 169, 381
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	5 cut(s)	139, 151, 167, 173, 286
FatI	CATG	5 cut(s)	135, 147, 163, 169, 282
Fnu4HI	GCNGC	4 cut(s)	105, 256, 304, 307
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	4 cut(s)	105, 256, 304, 307
GluI	GCNGC	4 cut(s)	105, 256, 304, 307
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	10, 168
Hin1II	CATG	5 cut(s)	139, 151, 167, 173, 286
HinfI	GANTC	1 cut(s)	211
HphI	GGTGA	2 cut(s)	16, 170
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	91, 240
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	25, 128, 243, 255, 282, 306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 300, 312
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	139, 151, 167, 173, 286
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	8 cut(s)	192, 219, 272, 292, 308, 315, 342, 358
Lsp1109I	GCAGC	4 cut(s)	91, 267, 290, 318
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	117, 176
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	245, 359
MlsI	TGGCCA	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	52, 167, 240, 243, 326, 336, 383
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MslI	CAYNNNNRTG	3 cut(s)	152, 168, 238
Msp20I	TGGCCA	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	207, 330
MvaI	CCWGG	2 cut(s)	207, 330
MwoI	GCNNNNNNNGC	3 cut(s)	228, 300, 312
NcoI	CCATGG	3 cut(s)	147, 163, 169
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	5 cut(s)	139, 151, 167, 173, 286
NmuCI	GTSAC	2 cut(s)	117, 176
NspI	RCATGY	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	106, 257, 305, 308
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	205, 328
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	2 cut(s)	205, 328
PspPI	GGNCC	3 cut(s)	9, 203, 392
PstI	CTGCAG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	3 cut(s)	152, 168, 238
SatI	GCNGC	4 cut(s)	105, 256, 304, 307
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	3 cut(s)	9, 203, 392
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	207, 330
SduI	GDGCHC	2 cut(s)	245, 359
SetI	ASST	6 cut(s)	24, 50, 70, 178, 224, 254
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	75, 304
SinI	GGWCC	2 cut(s)	203, 392
SmiMI	CAYNNNNRTG	3 cut(s)	152, 168, 238
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	205, 328
StyI	CCWWGG	4 cut(s)	147, 163, 169, 381
TaaI	ACNGT	2 cut(s)	91, 240
TaiI	ACGT	1 cut(s)	24
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	2 cut(s)	117, 176
TseI	GCWGC	4 cut(s)	104, 255, 303, 306
Tsp45I	GTSAC	2 cut(s)	117, 176
TspRI	CASTG	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	203, 392
XceI	RCATGY	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.