Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012607.1

Orthogroup ID

OG0016513

Physical Location & Seq

Genomic Coordinates Forward (+)

9132 .. 11624

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012607.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggtgaggcccaaccgagacgtgcatcctgtagccctatgttcaagctacgctatggtatccggaagtggcaaatacgtcgctgggaagtcaccttcccggccttgccaagaggggttaggtttgtctgtagcaatggcgacggtcaagtttgttgctgctttgatcttgtcactccttgcaatctccatgctccaaaccatggttatggcaaaccatggccatggaggtcaccacaaaggcaataatcaatatggaccagggagtctcaagagctaccaatgcccatcacagtgcacgaggaggtgcagccagacccaataccacaagccctgcatgtttttctgccagaaatgctgcagcaagtgcctctgtgtgcctccagggtactatggaaacaaggctgtgtgcccttgctacaacaactggaagaccaaggaaggaggaccaaaatgcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0019725 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

153

Amino Acids

16.56

Weight (kDa)

9.33

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15230 AT5G15230
fragaria_vesca	FvH4_6g48590
malus_domestica	MD09G1051300.v1.1 MD17G1041500.v1.1
prunus_persica	Prupe.3G267600_v2.0.a1
pyrus_communis	pycom111g04250 pycom17g04610
rosa_chinensis	RchiOBHm_Chr2g0168411
rosa_laevigata	RLG00000021780
rosa_multiflora	Rmu_sc0002789.1_g000002 Rmu_sc0012607.1_g000003
rosa_rugosa	Rorug02G0533800
rosa_wichuraiana	Rw2G050040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	220
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	259, 382
AluBI	AGCT	2 cut(s)	48, 276
AluI	AGCT	2 cut(s)	48, 276
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	12, 272
Alw44I	GTGCAC	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	3 cut(s)	8, 101, 220
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	4 cut(s)	158, 309, 357, 360
AspS9I	GGNCC	3 cut(s)	9, 257, 446
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	16, 84, 224
AvaII	GGWCC	2 cut(s)	257, 446
BaeGI	GKGCMC	2 cut(s)	299, 413
BalI	TGGCCA	1 cut(s)	222
BauI	CACGAG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	145, 321, 344, 372
BccI	CCATC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	2 cut(s)	261, 384
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	12, 272
BfmI	CTRYAG	3 cut(s)	30, 129, 358
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	4 cut(s)	159, 310, 358, 361
BlsI	GCNGC	4 cut(s)	160, 311, 359, 362
Bme1390I	CCNGG	3 cut(s)	100, 261, 384
Bme18I	GGWCC	2 cut(s)	257, 446
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	9, 257, 446
BmrFI	CCNGG	3 cut(s)	100, 261, 384
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	6 cut(s)	201, 217, 223, 260, 383, 435
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	261, 384
BseDI	CCNNGG	6 cut(s)	201, 217, 223, 260, 383, 435
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	2 cut(s)	299, 413
BseXI	GCAGC	4 cut(s)	145, 321, 344, 372
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	10, 103, 222
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	63, 100
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	12, 272
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	3 cut(s)	10, 103, 222
Bsp1286I	GDGCHC	2 cut(s)	299, 413
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	165
Bsp19I	CCATGG	3 cut(s)	201, 217, 223
BspANI	GGCC	3 cut(s)	10, 103, 222
BspEI	TCCGGA	1 cut(s)	62
BspMAI	CTGCAG	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	6 cut(s)	201, 217, 223, 260, 383, 435
BssMI	GATC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	4 cut(s)	201, 217, 223, 435
Bst2BI	CACGAG	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	261, 384
Bst4CI	ACNGT	2 cut(s)	145, 294
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstDSI	CCRYGG	3 cut(s)	201, 217, 223
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	12, 272
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 354, 366
BstNI	CCWGG	2 cut(s)	261, 384
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	3 cut(s)	98, 259, 382
BstSFI	CTRYAG	3 cut(s)	30, 129, 358
BstSLI	GKGCMC	2 cut(s)	299, 413
BstV1I	GCAGC	4 cut(s)	145, 321, 344, 372
BstV2I	GAAGAC	1 cut(s)	437
BstXI	CCANNNNNNTGG	2 cut(s)	208, 224
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	10, 103, 222
BtgI	CCRYGG	3 cut(s)	201, 217, 223
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	9, 257, 446
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	5 cut(s)	190, 202, 218, 224, 337
CviJI	RGCY	9 cut(s)	10, 35, 48, 103, 222, 276, 312, 331, 404
CviKI_1	RGCY	9 cut(s)	10, 35, 48, 103, 222, 276, 312, 331, 404
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	220
Eco130I	CCWWGG	4 cut(s)	201, 217, 223, 435
Eco47I	GGWCC	2 cut(s)	257, 446
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	259, 382
EcoT14I	CCWWGG	4 cut(s)	201, 217, 223, 435
ErhI	CCWWGG	4 cut(s)	201, 217, 223, 435
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	5 cut(s)	193, 205, 221, 227, 340
FatI	CATG	5 cut(s)	189, 201, 217, 223, 336
Fnu4HI	GCNGC	4 cut(s)	159, 310, 358, 361
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	4 cut(s)	159, 310, 358, 361
GluI	GCNGC	4 cut(s)	159, 310, 358, 361
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	10, 103, 222
HapII	CCGG	2 cut(s)	63, 100
Hin1II	CATG	5 cut(s)	193, 205, 221, 227, 340
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	63, 100
HphI	GGTGA	3 cut(s)	16, 84, 224
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188III	TCNNGA	2 cut(s)	63, 271
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	2 cut(s)	83, 145
HpyAV	CCTTC	2 cut(s)	105, 434
HpyCH4III	ACNGT	2 cut(s)	145, 294
HpyCH4IV	ACGT	2 cut(s)	21, 78
HpyCH4V	TGCA	6 cut(s)	25, 182, 297, 309, 336, 360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 354, 366
HpySE526I	ACGT	2 cut(s)	21, 78
Hsp92II	CATG	5 cut(s)	193, 205, 221, 227, 340
Kpn2I	TCCGGA	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	4 cut(s)	145, 321, 344, 372
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	2 cut(s)	21, 78
MaeIII	GTNAC	3 cut(s)	90, 171, 230
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	442
MhlI	GDGCHC	2 cut(s)	299, 413
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	7 cut(s)	106, 221, 294, 297, 380, 390, 437
Mox20I	TGGCCA	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	222
MslI	CAYNNNNRTG	3 cut(s)	206, 222, 292
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	2 cut(s)	63, 100
MspR9I	CCNGG	3 cut(s)	100, 261, 384
MvaI	CCWGG	2 cut(s)	261, 384
MwoI	GCNNNNNNNGC	3 cut(s)	282, 354, 366
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	3 cut(s)	201, 217, 223
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	5 cut(s)	193, 205, 221, 227, 340
NmuCI	GTSAC	3 cut(s)	90, 171, 230
NspI	RCATGY	1 cut(s)	340
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	160, 311, 359, 362
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	259, 382
PspEI	GGTNACC	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	2 cut(s)	259, 382
PspPI	GGNCC	3 cut(s)	9, 257, 446
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	3 cut(s)	206, 222, 292
SatI	GCNGC	4 cut(s)	159, 310, 358, 361
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	3 cut(s)	9, 257, 446
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	3 cut(s)	100, 261, 384
SduI	GDGCHC	2 cut(s)	299, 413
SetI	ASST	8 cut(s)	24, 50, 81, 97, 124, 232, 278, 308
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	3 cut(s)	30, 129, 358
SinI	GGWCC	2 cut(s)	257, 446
SmiMI	CAYNNNNRTG	3 cut(s)	206, 222, 292
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	98, 259, 382
StyI	CCWWGG	4 cut(s)	201, 217, 223, 435
TaaI	ACNGT	2 cut(s)	145, 294
TaiI	ACGT	2 cut(s)	24, 81
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	3 cut(s)	90, 171, 230
TseI	GCWGC	4 cut(s)	158, 309, 357, 360
Tsp45I	GTSAC	3 cut(s)	90, 171, 230
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	202
VneI	GTGCAC	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	257, 446
XceI	RCATGY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.