Prupe.3G267600_v2.0.a1

Gibberellin-regulated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
25007088 .. 25008231
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G267600.1

Sequence Viewer

Length: 327 bp
ATGGCCATGGCTAAGTTTTTTGCTGCCTTGATGTTGGCACTCCTTGCCATCTCCATGCTTCAAACCACGGTTATGGCAAATAATGGACATGGAGGTCATCACGGTGGCAATAATGCATATGGACCTGGGAGCCTCAAGAGCTACCAATGCCCATCACAATGCTCGAGGAGATGCGGCCAGACCCAATACCACAAGCCCTGCATGTTCTTCTGTCAGAAATGCTGCAAAAAGTGTCTGTGTGTGCCCCCAGGGTATTATGGGAACAAAGGTGTGTGCCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCCAAGTGCCCTTGA

Protein Analysis

109

Amino Acids

11.76

Weight (kDa)

9.26

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016513)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15230 AT5G15230
fragaria_vesca FvH4_6g48590
malus_domestica MD09G1051300.v1.1 MD17G1041500.v1.1
prunus_persica Prupe.3G267600_v2.0.a1
pyrus_communis pycom111g04250 pycom17g04610
rosa_chinensis RchiOBHm_Chr2g0168411
rosa_laevigata RLG00000021780
rosa_multiflora Rmu_sc0002789.1_g000002 Rmu_sc0012607.1_g000003
rosa_rugosa Rorug02G0533800
rosa_wichuraiana Rw2G050040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 93
AciI CCGC 1 cut(s) 174
AcoI YGGCCR 2 cut(s) 3, 175
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 2 cut(s) 124, 247
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 2 cut(s) 3, 175
ApeKI GCWGC 2 cut(s) 23, 222
AspS9I GGNCC 2 cut(s) 122, 311
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 2 cut(s) 122, 311
BaeGI GKGCMC 3 cut(s) 246, 278, 323
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 10, 209
BccI CCATC 2 cut(s) 56, 160
BciT130I CCWGG 2 cut(s) 126, 249
BisI GCNGC 3 cut(s) 24, 175, 223
BlsI GCNGC 3 cut(s) 25, 176, 224
Bme1390I CCNGG 2 cut(s) 126, 249
Bme18I GGWCC 2 cut(s) 122, 311
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 122, 311
BmiI GGNNCC 2 cut(s) 131, 313
BmrFI CCNGG 2 cut(s) 126, 249
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 5 cut(s) 6, 66, 125, 247, 248
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 126, 249
BseDI CCNNGG 5 cut(s) 6, 66, 125, 247, 248
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 3 cut(s) 246, 278, 323
BseXI GCAGC 2 cut(s) 10, 209
BseYI CCCAGC 1 cut(s) 300
BshFI GGCC 2 cut(s) 5, 177
BsiHKCI CYCGRG 1 cut(s) 163
BsnI GGCC 2 cut(s) 5, 177
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 246, 278, 323
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 1 cut(s) 174
BspANI GGCC 2 cut(s) 5, 177
BspLI GGNNCC 2 cut(s) 131, 313
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 5 cut(s) 6, 66, 125, 247, 248
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 126, 249
Bst4CI ACNGT 2 cut(s) 70, 104
BstAPI GCANNNNNTGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 2 cut(s) 6, 66
BstMWI GCNNNNNNNGC 3 cut(s) 44, 138, 147
BstNI CCWGG 2 cut(s) 126, 249
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 124, 247
BstSLI GKGCMC 3 cut(s) 246, 278, 323
BstV1I GCAGC 2 cut(s) 10, 209
BstV2I GAAGAC 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuRI GGCC 2 cut(s) 5, 177
BtgI CCRYGG 2 cut(s) 6, 66
Cfr13I GGNCC 2 cut(s) 122, 311
CviAII CATG 4 cut(s) 7, 55, 89, 202
CviJI RGCY 6 cut(s) 5, 11, 132, 141, 177, 196
CviKI_1 RGCY 6 cut(s) 5, 11, 132, 141, 177, 196
DdeI CTNAG 1 cut(s) 12
DrdI GACNNNNNNGTC 1 cut(s) 93
DseDI GACNNNNNNGTC 1 cut(s) 93
EaeI YGGCCR 2 cut(s) 3, 175
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 122, 311
Eco88I CYCGRG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 124, 247
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 10, 58, 92, 205
FaiI YATR 8 cut(s) 8, 56, 74, 90, 118, 120, 203, 258
FatI CATG 4 cut(s) 6, 54, 88, 201
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 24, 175, 223
Fsp4HI GCNGC 3 cut(s) 24, 175, 223
GluI GCNGC 3 cut(s) 24, 175, 223
GsaI CCCAGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 5, 177
Hin1II CATG 4 cut(s) 10, 58, 92, 205
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 70, 104
HpyCH4V TGCA 3 cut(s) 116, 201, 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 138, 147
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 4 cut(s) 10, 58, 92, 205
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 8 cut(s) 111, 138, 191, 211, 234, 261, 277, 314
Lsp1109I GCAGC 2 cut(s) 10, 209
LweI GCATC 1 cut(s) 161
MboII GAAGA 2 cut(s) 199, 307
MhlI GDGCHC 3 cut(s) 246, 278, 323
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 86, 143, 159, 302
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 118
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 4 cut(s) 53, 71, 102, 157
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 126, 249
MvaI CCWGG 2 cut(s) 126, 249
MwoI GCNNNNNNNGC 3 cut(s) 44, 138, 147
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 118
NlaIII CATG 4 cut(s) 10, 58, 92, 205
NlaIV GGNNCC 2 cut(s) 131, 313
NsiI ATGCAT 1 cut(s) 118
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 163
PasI CCCWGGG 1 cut(s) 248
PkrI GCNGC 3 cut(s) 25, 176, 224
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 124, 247
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 2 cut(s) 124, 247
PspN4I GGNNCC 2 cut(s) 131, 313
PspPI GGNCC 2 cut(s) 122, 311
PspPPI RGGWCCY 1 cut(s) 311
PspXI VCTCGAGB 1 cut(s) 163
RseI CAYNNNNRTG 4 cut(s) 53, 71, 102, 157
SatI GCNGC 3 cut(s) 24, 175, 223
Sau96I GGNCC 2 cut(s) 122, 311
ScrFI CCNGG 2 cut(s) 126, 249
SduI GDGCHC 3 cut(s) 246, 278, 323
SetI ASST 4 cut(s) 97, 127, 143, 271
SfaNI GCATC 1 cut(s) 161
Sfr274I CTCGAG 1 cut(s) 163
SinI GGWCC 2 cut(s) 122, 311
SlaI CTCGAG 1 cut(s) 163
SmiMI CAYNNNNRTG 4 cut(s) 53, 71, 102, 157
SmlI CTYRAG 2 cut(s) 134, 163
SmoI CTYRAG 2 cut(s) 134, 163
SsiI CCGC 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 124, 247
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 70, 104
TaqI TCGA 1 cut(s) 164
TauI GCSGC 1 cut(s) 177
TseI GCWGC 2 cut(s) 23, 222
VpaK11BI GGWCC 2 cut(s) 122, 311
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.