Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014175

Physical Location & Seq

Genomic Coordinates Forward (+)

5141035 .. 5142890

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGAAAGCTCAAGTATCACGAGAAGAAGCTTATAAAGAAAGTAAATTTCTTAGAATGGAAAAGAGAAGGTAACCATCGGGAAAACGAGATTACGTATCGATACCACATGGGCTCTCGTGATGATTACAAAAAGTATTCAGGATTGTGTAGGATGGTGCAGAAACTGACGAATATAATGAAACAAATGGATCCAGCAGATCCTTTTCGTATTCAGATGACTGATATGCTTTTGGAGAAGCTATATAACATGGGTGTTATACCGACTAGGAAAAGCTTGACTCTAACTGAGCGGTTATCAGTTTCATCCTTCTGTAGGCGTAGGCTATCTACTGTGCTGGTTCACCTGAAGTTTGCAGAGCACCACAAAGAAGCTGTGACATACATAGAGCAAGGACACGTTCGTGTAGGACCAGAAACAATTACTGATCCAGCTTTCTTAGTAACTCGGAACATGGAAGATTTCATCACTTGGGTTGATTCATCCAAGATTAAACGAAAGGTTCTTGAGTACAATGACACATTGGATGATTATGACATGCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034457 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

182

Amino Acids

21.77

Weight (kDa)

9.41

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	3 - 93	9.9e-19	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	107 - 153	5e-09	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15750
fragaria_vesca	FvH4_6g46310
malus_domestica	MD09G1075700.v1.1 MD17G1066400.v1.1
prunus_persica	Prupe.3G248300_v2.0.a1
pyrus_communis	pycom09g00310 pycom17g06690
rosa_chinensis	RchiOBHm_Chr2g0164761
rosa_laevigata	RLG00000021483
rosa_multiflora	Rmu_sc0000946.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086320
rosa_rugosa	Rorug02G0510000
rosa_samantha	Rh2AG578300 Rh2BG589400 Rh2CG560000 Rh2DG599800
rosa_wichuraiana	Rw2G048010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	4 cut(s)	185, 194, 198, 422
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	397
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	6 cut(s)	10, 31, 241, 276, 374, 434
AluI	AGCT	6 cut(s)	10, 31, 241, 276, 374, 434
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	4 cut(s)	185, 194, 198, 422
AlwNI	CAGNNNCTG	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	116
BauI	CACGAG	2 cut(s)	20, 117
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	2 cut(s)	84, 148
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	100
BseGI	GGATG	4 cut(s)	159, 305, 482, 532
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	116, 363
Bsp143I	GATC	3 cut(s)	190, 199, 427
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	4 cut(s)	185, 194, 198, 422
BsrBI	CCGCTC	1 cut(s)	292
BssMI	GATC	3 cut(s)	190, 199, 427
BssSI	CACGAG	2 cut(s)	20, 117
Bst2BI	CACGAG	2 cut(s)	20, 117
Bst4CI	ACNGT	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	52, 288, 439, 546
BstEII	GGTNACC	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	4 cut(s)	159, 305, 482, 532
BstKTI	GATC	3 cut(s)	193, 202, 430
BstMBI	GATC	3 cut(s)	190, 199, 427
BstNSI	RCATGY	1 cut(s)	541
BstPI	GGTNACC	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	313
BstSNI	TACGTA	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	190, 199
BstYI	RGATCY	2 cut(s)	190, 199
Bsu15I	ATCGAT	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	159, 305, 482, 532
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	4 cut(s)	109, 250, 454, 538
CviJI	RGCY	8 cut(s)	10, 31, 114, 241, 276, 325, 374, 434
CviKI_1	RGCY	8 cut(s)	10, 31, 114, 241, 276, 325, 374, 434
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	4 cut(s)	52, 288, 439, 546
DpnI	GATC	3 cut(s)	192, 201, 429
DpnII	GATC	3 cut(s)	190, 199, 427
Eco105I	TACGTA	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	368
Eco91I	GGTNACC	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	4 cut(s)	112, 253, 457, 541
FatI	CATG	4 cut(s)	108, 249, 453, 537
FokI	GGATG	4 cut(s)	166, 292, 469, 539
FriOI	GRGCYC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	267
Hin1II	CATG	4 cut(s)	112, 253, 457, 541
HindIII	AAGCTT	2 cut(s)	29, 274
HinfI	GANTC	2 cut(s)	280, 479
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	216, 450
Hpy188III	TCNNGA	5 cut(s)	20, 80, 119, 141, 506
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	62, 319
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	95, 399
HpyCH4V	TGCA	2 cut(s)	160, 356
HpyF3I	CTNAG	4 cut(s)	52, 288, 439, 546
HpySE526I	ACGT	2 cut(s)	95, 399
Hsp92II	CATG	4 cut(s)	112, 253, 457, 541
Kzo9I	GATC	3 cut(s)	190, 199, 427
LpnPI	CCDG	6 cut(s)	126, 207, 323, 359, 426, 444
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	2 cut(s)	95, 399
MaeIII	GTNAC	3 cut(s)	71, 376, 442
MalI	GATC	3 cut(s)	192, 201, 429
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	3 cut(s)	190, 199, 427
MboII	GAAGA	2 cut(s)	37, 470
MflI	RGATCY	2 cut(s)	190, 199
MhlI	GDGCHC	2 cut(s)	116, 363
MluCI	AATT	2 cut(s)	46, 420
MlyI	GAGTC	1 cut(s)	274
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	402
NdeII	GATC	3 cut(s)	190, 199, 427
NlaIII	CATG	4 cut(s)	112, 253, 457, 541
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	479
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	35
PspEI	GGTNACC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	410
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	190, 199
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	492
Sau3AI	GATC	3 cut(s)	190, 199, 427
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	116, 363
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	11, 506
SmoI	CTYRAG	2 cut(s)	11, 506
SnaBI	TACGTA	1 cut(s)	96
Sse9I	AATT	2 cut(s)	46, 420
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	98, 402
TaqI	TCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	46, 420
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	194, 294, 454, 471
VpaK11BI	GGWCC	1 cut(s)	410
XagI	CCTNNNNNAGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	541
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.