Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014175

Physical Location & Seq

Genomic Coordinates Forward (+)

73784499 .. 73786843

Gene Structure 2345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG560000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGAAGCTCAAGTACCATGAGAAGAAGCTGTTGAAGAAAGTCGACTTCTTGTCATGGAAGAGAGAAGGAGGTCACAGAGAGGCCACGGTTATGCAACGTTACTACGTCACGGGCCGCGACGATTACAAAAAGTATTCGAGTGTGTGCAGGACTACTCAGAAGATGGTGAACATGTTGAAACAGATGAACCCGAACGACCCGAGTCGGATTGAATTGACTGATAAGCTTTTGGAAAAACTGTACAATATTGGTGTGATACCGACCAGGCAGAGCTTGAAAGAGTGTGAAAAATTGTCGGTGTCATCCTTCTGCAGACGAAGGCTTTCAACTGTTTTGGTGCGATTGAAGTTTGCTGAGCACCTGAAGGAGGCTGTCACTTATATTGAGCAAGGGCATATCAGAGTGGGTCCAGAGACTGTTACTGACCCGGCATTTCTTGTGACAAGGAATATGGAAGACTTCATTACATGGGTGGATTCATCCAAGATCAAGAGAAAGGTTATGCAGTACAATGACAAGCTAGATGATTATGATATAATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034457 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

182

Amino Acids

21.63

Weight (kDa)

9.6

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	3 - 105	1.4e-16	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	107 - 153	2.1e-10	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15750
fragaria_vesca	FvH4_6g46310
malus_domestica	MD09G1075700.v1.1 MD17G1066400.v1.1
prunus_persica	Prupe.3G248300_v2.0.a1
pyrus_communis	pycom09g00310 pycom17g06690
rosa_chinensis	RchiOBHm_Chr2g0164761
rosa_laevigata	RLG00000021483
rosa_multiflora	Rmu_sc0000946.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086320
rosa_rugosa	Rorug02G0510000
rosa_samantha	Rh2AG578300 Rh2BG589400 Rh2CG560000 Rh2DG599800
rosa_wichuraiana	Rw2G048010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	118
AclI	AACGTT	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	17, 245, 512
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	6 cut(s)	37, 181, 215, 280, 330, 349
AhdI	GACNNNNNGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	5 cut(s)	10, 31, 229, 276, 523
AluI	AGCT	5 cut(s)	10, 31, 229, 276, 523
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	2 cut(s)	84, 115
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	115, 410
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	410
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	313
BisI	GCNGC	1 cut(s)	118
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	268, 431
Bme18I	GGWCC	1 cut(s)	410
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	115, 410
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	2 cut(s)	268, 431
BoxI	GACNNNNGTC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	305, 482
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	173, 348
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	86, 117
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	86, 117
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	489
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	86, 117
BspCNI	CTCAG	2 cut(s)	172, 349
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	4 cut(s)	91, 243, 334, 421
Bst6I	CTCTTC	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	159, 357
BstDSI	CCRYGG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	305, 482
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	178
BstPAI	GACNNNNGTC	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	266, 429
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	86, 117
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	305, 482
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	115, 410
Csp6I	GTAC	3 cut(s)	16, 244, 511
CviAII	CATG	4 cut(s)	20, 57, 175, 471
CviJI	RGCY	9 cut(s)	10, 31, 86, 117, 229, 276, 325, 374, 523
CviKI_1	RGCY	9 cut(s)	10, 31, 86, 117, 229, 276, 325, 374, 523
CviQI	GTAC	3 cut(s)	16, 244, 511
DdeI	CTNAG	2 cut(s)	159, 357
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	266
FaeI	CATG	4 cut(s)	23, 60, 178, 474
FatI	CATG	4 cut(s)	19, 56, 174, 470
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	2 cut(s)	292, 469
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	86, 117
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	4 cut(s)	23, 60, 178, 474
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	205, 479
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	46, 172
Hpy188I	TCNGA	3 cut(s)	162, 210, 404
Hpy188III	TCNNGA	2 cut(s)	413, 493
Hpy8I	GTNNAC	2 cut(s)	46, 172
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	62, 315, 319, 361
HpyCH4III	ACNGT	4 cut(s)	91, 243, 334, 421
HpyCH4IV	ACGT	2 cut(s)	100, 108
HpyCH4V	TGCA	4 cut(s)	97, 150, 315, 508
HpyF3I	CTNAG	2 cut(s)	159, 357
HpySE526I	ACGT	2 cut(s)	100, 108
Hsp92II	CATG	4 cut(s)	23, 60, 178, 474
Kzo9I	GATC	1 cut(s)	489
LpnPI	CCDG	6 cut(s)	136, 253, 280, 377, 426, 444
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	2 cut(s)	100, 108
MaeIII	GTNAC	6 cut(s)	74, 101, 109, 376, 421, 442
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	5 cut(s)	37, 49, 73, 175, 470
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	215, 293
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	65, 76, 364
MroXI	GAANNNNTTC	1 cut(s)	325
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	268, 431
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	4 cut(s)	23, 60, 178, 474
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	4 cut(s)	74, 109, 376, 442
NspI	RCATGY	1 cut(s)	178
PciI	ACATGT	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PscI	ACATGT	1 cut(s)	174
PshAI	GACNNNNGTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	115, 410
PstI	CTGCAG	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	17, 245, 512
RsaNI	GTAC	3 cut(s)	16, 244, 511
RseI	CAYNNNNRTG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	44
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	2 cut(s)	115, 410
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	268, 431
SduI	GDGCHC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	215, 293
SsiI	CCGC	1 cut(s)	118
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	266, 429
TaaI	ACNGT	4 cut(s)	91, 243, 334, 421
TaiI	ACGT	2 cut(s)	103, 111
TaqI	TCGA	2 cut(s)	45, 140
TasI	AATT	2 cut(s)	215, 293
TatI	WGTACW	2 cut(s)	243, 510
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	479
TseFI	GTSAC	4 cut(s)	74, 109, 376, 442
Tsp45I	GTSAC	4 cut(s)	74, 109, 376, 442
TspDTI	ATGAA	3 cut(s)	203, 454, 471
VpaK11BI	GGWCC	1 cut(s)	410
XagI	CCTNNNNNAGG	1 cut(s)	368
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.