Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014175

Physical Location & Seq

Genomic Coordinates Forward (+)

35343099 .. 35345231

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGAAGCTCAAGTACCATGAGAAGAAGCTGTTGAAGAAAGTGGACTTCCTGTCATGGAAGAGAGAAGGAGGTCACAGAGAGGCCATGGTTATGCAACGTTACCACGTCACTGGCCGCGACGATTACAAAAAATATTCGAGTGTGTGCCGGACGACTCAGAAGATGGTGAACATGTTGAAGCAGATGAACCCGAATGACCCGACTCGGATTGAATTGACTGATAAGCTGTTGGAGAAGCTGTACAATATTGGTGTCATACCGACCAGGCAAAGCTTGAAAGAATGTGAAAAATTATCGGTGTCATCCTTCTGTAGACGAAGACTCTCAACTGTTTTGATGCGATTGAAGTTTGCTGAGCACCTGAAGGAGGCTGTCACATACATTGAGCAAGGGCATATAAGAGTGGGTCCAGAGACTGTTACTGACCCAGCATTCCTTGTGACAAGGAATATGGAAGACTTCATAACATGGGTGGACTCATCCAAGATCAAGAGAAAGGTTATGCAGTACAATGACAAGCTAGATGATTATGATATAATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034457 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

183

Amino Acids

21.68

Weight (kDa)

9.62

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	3 - 105	1.5e-16	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	107 - 153	3.5e-09	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15750
fragaria_vesca	FvH4_6g46310
malus_domestica	MD09G1075700.v1.1 MD17G1066400.v1.1
prunus_persica	Prupe.3G248300_v2.0.a1
pyrus_communis	pycom09g00310 pycom17g06690
rosa_chinensis	RchiOBHm_Chr2g0164761
rosa_laevigata	RLG00000021483
rosa_multiflora	Rmu_sc0000946.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086320
rosa_rugosa	Rorug02G0510000
rosa_samantha	Rh2AG578300 Rh2BG589400 Rh2CG560000 Rh2DG599800
rosa_wichuraiana	Rw2G048010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	316
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	118
AclI	AACGTT	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	17, 245, 512
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	5 cut(s)	37, 181, 215, 280, 349
AhdI	GACNNNNNGTC	1 cut(s)	52
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	10, 31, 229, 241, 276, 523
AluI	AGCT	6 cut(s)	10, 31, 229, 241, 276, 523
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	84, 115
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	410
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	328, 465
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	313
BisI	GCNGC	1 cut(s)	118
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	410
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	2 cut(s)	328, 465
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	305, 482
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	173, 348
BseNI	ACTGG	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	86, 117
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	86, 117
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	489
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	86, 117
BspCNI	CTCAG	2 cut(s)	172, 349
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	334, 421
Bst6I	CTCTTC	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	159, 357
BstDSI	CCRYGG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	305, 482
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	120
BstV2I	GAAGAC	2 cut(s)	328, 465
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	86, 117
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	305, 482
BtsIMutI	CAGTG	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	16, 244, 511
CviAII	CATG	5 cut(s)	20, 57, 88, 175, 471
CviJI	RGCY	9 cut(s)	10, 31, 86, 117, 229, 241, 276, 374, 523
CviKI_1	RGCY	9 cut(s)	10, 31, 86, 117, 229, 241, 276, 374, 523
CviQI	GTAC	3 cut(s)	16, 244, 511
DdeI	CTNAG	2 cut(s)	159, 357
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DriI	GACNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	23, 60, 91, 178, 474
FatI	CATG	5 cut(s)	19, 56, 87, 174, 470
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	2 cut(s)	292, 469
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	1 cut(s)	118
GsaI	CCCAGC	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	86, 117
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	5 cut(s)	23, 60, 91, 178, 474
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	4 cut(s)	157, 205, 324, 479
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	4 cut(s)	46, 172, 317, 478
Hpy188I	TCNGA	2 cut(s)	162, 210
Hpy188III	TCNNGA	2 cut(s)	413, 493
Hpy8I	GTNNAC	4 cut(s)	46, 172, 317, 478
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	62, 319, 361
HpyCH4III	ACNGT	2 cut(s)	334, 421
HpyCH4IV	ACGT	2 cut(s)	100, 108
HpyCH4V	TGCA	2 cut(s)	97, 508
HpyF3I	CTNAG	2 cut(s)	159, 357
HpySE526I	ACGT	2 cut(s)	100, 108
Hsp92II	CATG	5 cut(s)	23, 60, 91, 178, 474
Kzo9I	GATC	1 cut(s)	489
LpnPI	CCDG	8 cut(s)	65, 99, 164, 253, 280, 377, 426, 444
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	2 cut(s)	100, 108
MaeIII	GTNAC	6 cut(s)	74, 101, 109, 376, 421, 442
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	6 cut(s)	37, 49, 73, 175, 333, 470
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	215, 293
MlyI	GAGTC	4 cut(s)	151, 199, 318, 473
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	65, 76, 364
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	5 cut(s)	23, 60, 91, 178, 474
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	4 cut(s)	74, 109, 376, 442
NspI	RCATGY	1 cut(s)	178
PciI	ACATGT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	4 cut(s)	151, 199, 318, 473
PpsI	GAGTC	4 cut(s)	151, 199, 318, 473
PscI	ACATGT	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	410
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	17, 245, 512
RsaNI	GTAC	3 cut(s)	16, 244, 511
RseI	CAYNNNNRTG	1 cut(s)	92
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	4 cut(s)	151, 199, 318, 473
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	215, 293
SsiI	CCGC	1 cut(s)	118
SspI	AATATT	2 cut(s)	137, 250
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	334, 421
TaiI	ACGT	2 cut(s)	103, 111
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	215, 293
TatI	WGTACW	2 cut(s)	243, 510
TauI	GCSGC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	4 cut(s)	74, 109, 376, 442
Tsp45I	GTSAC	4 cut(s)	74, 109, 376, 442
TspDTI	ATGAA	2 cut(s)	203, 454
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	410
XagI	CCTNNNNNAGG	1 cut(s)	368
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.