Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014175

Physical Location & Seq

Genomic Coordinates Forward (+)

64052538 .. 64054767

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0510000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGACTCTCAAACTTGTCATGGTTACGTTTTCATTACTTTTGTTCTTATCCTTGACATCCTCGACATCTGGAAGGAGAGAGCTTCTAGCCGATGGTGGTGAATTTGACGTGACCAATGCGAAATATGGTGCAAAGCCCAATTCTGATATTACTGAGGCTTTAGCAAATGCTTGGAAAGATGCCTGTGCATCAACATCGGCAAGTAAAGTTATTGTTCCAAAAGGGACATTCAAAGTAAAAGAAGCAAGTTTCAAAGGTCCTTGCAAGGCTCCTATTGAGGTTCAGGTCCAAGGCACATTACAGGCGCCAGAAGATGCAAGCCAATTATCGAAACAAGATACTTGGATCGAGTTTTTATACCTTAACGACTTCACGCTATCGGGTGGTGGAACCTTTGATGGCCAAGGACAAAAAACTTGGAAAGCCATTGATCCAAAAAACGCAAAGGCTGGCACCATTAATATCAGGTTCCACGCCGTCAAGAAGTCATTAGTCAAGGATATAACTTCACTTAATAGCAAGAACTTCCACATCAACGTAATAAGTTGCGAGCAACTTACGTTCGATCATGTCACCGTCACTGCACCTGGAGATAGCCCTAACACAGATGGAATACATATCGCGCGCTCAACCGGGGTCAACGTTACTGATACAAATATCGGAACCGGAGATGATTGCATTTCAATTGGTGATGGTACCAAGCAACTTACCATAACTAAGGTTACTTGTGGACCAGGCCATGGAATAAGCGTTGGAAGTCTTGGAAGGTACGACAAAGAAGACCCTGTGGAAGGAATCAATGTTAAGAACTGTACCCTCAGTAAAACGACTAATGGTGTTAGAATCAAGACATGGGCTAAAAATCCTCAAGCTAGCACTTGCTCAGAAATTCACTTTGAGGATATCATCATGAATGATGTTCAAAACCCAATCGTCGTAGATCAAGAATACTGCCCATGGAATCAATGTGATAAACAGGCTTCATCGAAAATCAAGATCAGCAATGTGAGTTTCAAGAACATTAGAGGGACGACTTCCACTCCGTTGGGCGTGAAGATTGTATGCGCCAAGGGCTTACCATGTGAGAAGGTGGAGATGACTGGCATTGATCTCAAATTCACCGGCACAGGTGCACTCACGTCTCAATGTACGAATGTCAAACCCACAATTGCTAATGTGGCACAGCCTCTTGCTTGTGCTACCGATGCTCCTGTACCGGCTGGACCAGCTGAGAAGTCTAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034457 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

415

Amino Acids

44.22

Weight (kDa)

7.46

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	62 - 388	9.9e-102	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15750
fragaria_vesca	FvH4_6g46310
malus_domestica	MD09G1075700.v1.1 MD17G1066400.v1.1
prunus_persica	Prupe.3G248300_v2.0.a1
pyrus_communis	pycom09g00310 pycom17g06690
rosa_chinensis	RchiOBHm_Chr2g0164761
rosa_laevigata	RLG00000021483
rosa_multiflora	Rmu_sc0000946.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086320
rosa_rugosa	Rorug02G0510000
rosa_samantha	Rh2AG578300 Rh2BG589400 Rh2CG560000 Rh2DG599800
rosa_wichuraiana	Rw2G048010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	695
AccB1I	GGYRCC	3 cut(s)	304, 452, 695
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccII	CGCG	2 cut(s)	623, 625
AclI	AACGTT	1 cut(s)	642
AclWI	GGATC	2 cut(s)	353, 425
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	3 cut(s)	101, 888, 1115
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	5 cut(s)	697, 770, 814, 1150, 1215
AfiI	CCNNNNNNNGG	2 cut(s)	740, 791
AgsI	TTSAA	5 cut(s)	232, 253, 684, 923, 1015
AjiI	CACGTC	2 cut(s)	109, 1140
AjnI	CCWGG	2 cut(s)	586, 733
AluBI	AGCT	3 cut(s)	82, 872, 1229
AluI	AGCT	3 cut(s)	82, 872, 1229
Alw21I	GWGCWC	1 cut(s)	1135
Alw26I	GTCTC	1 cut(s)	1146
Alw44I	GTGCAC	1 cut(s)	1131
AlwI	GGATC	2 cut(s)	353, 425
AoxI	GGCC	2 cut(s)	400, 736
ApaLI	GTGCAC	1 cut(s)	1131
ApoI	RAATTY	3 cut(s)	101, 888, 1115
AseI	ATTAAT	1 cut(s)	459
Asp718I	GGTACC	1 cut(s)	695
AspLEI	GCGC	4 cut(s)	307, 625, 627, 1067
AspS9I	GGNCC	4 cut(s)	257, 286, 731, 1223
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	4 cut(s)	110, 565, 701, 1111
AsuNHI	GCTAGC	1 cut(s)	872
AvaII	GGWCC	4 cut(s)	257, 286, 731, 1223
BaeGI	GKGCMC	1 cut(s)	1135
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	3 cut(s)	304, 452, 695
BbsI	GAAGAC	1 cut(s)	786
Bbv12I	GWGCWC	1 cut(s)	1135
BccI	CCATC	4 cut(s)	86, 392, 602, 686
BceAI	ACGGC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	2 cut(s)	588, 735
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	1146
BfaI	CTAG	2 cut(s)	86, 873
BfoI	RGCGCY	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	588, 634, 735
Bme18I	GGWCC	4 cut(s)	257, 286, 731, 1223
BmgBI	CACGTC	2 cut(s)	109, 1140
BmgT120I	GGNCC	4 cut(s)	257, 286, 731, 1223
BmiI	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
BmrFI	CCNGG	3 cut(s)	588, 634, 735
BmsI	GCATC	4 cut(s)	169, 197, 304, 1195
BmtI	GCTAGC	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	786
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	852
BpuMI	CCSGG	1 cut(s)	634
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	6 cut(s)	289, 403, 633, 739, 956, 1068
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	4 cut(s)	1024, 1054, 1192, 1222
Bsc4I	CCNNNNNNNGG	2 cut(s)	740, 791
Bse118I	RCCGGY	2 cut(s)	1121, 1216
Bse1I	ACTGG	1 cut(s)	1105
Bse3DI	GCAATG	1 cut(s)	1009
BseBI	CCWGG	2 cut(s)	588, 735
BseDI	CCNNGG	6 cut(s)	289, 403, 633, 739, 956, 1068
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	740, 791
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	4 cut(s)	144, 832, 897, 1221
BseNI	ACTGG	1 cut(s)	1105
BsePI	GCGCGC	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	1135
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	2 cut(s)	623, 625
BshFI	GGCC	2 cut(s)	402, 738
BshNI	GGYRCC	3 cut(s)	304, 452, 695
BsiHKAI	GWGCWC	1 cut(s)	1135
BsiSI	CCGG	4 cut(s)	633, 666, 1122, 1217
BslFI	GGGAC	2 cut(s)	238, 1042
BslI	CCNNNNNNNGG	2 cut(s)	740, 791
BsmAI	GTCTC	1 cut(s)	1146
BsmBI	CGTCTC	1 cut(s)	1146
BsmFI	GGGAC	2 cut(s)	238, 1042
BsnI	GGCC	2 cut(s)	402, 738
Bsp1286I	GDGCHC	1 cut(s)	1135
Bsp143I	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
Bsp19I	CCATGG	2 cut(s)	739, 956
BspANI	GGCC	2 cut(s)	402, 738
BspCNI	CTCAG	4 cut(s)	145, 831, 896, 1222
BspFNI	CGCG	2 cut(s)	623, 625
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	2 cut(s)	353, 425
BspT107I	GGYRCC	3 cut(s)	304, 452, 695
BsrDI	GCAATG	1 cut(s)	1009
BsrFI	RCCGGY	2 cut(s)	1121, 1216
BsrI	ACTGG	1 cut(s)	1105
BssAI	RCCGGY	2 cut(s)	1121, 1216
BssECI	CCNNGG	6 cut(s)	289, 403, 633, 739, 956, 1068
BssHII	GCGCGC	1 cut(s)	623
BssMI	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	5 cut(s)	289, 403, 739, 956, 1068
Bst2UI	CCWGG	2 cut(s)	588, 735
Bst4CI	ACNGT	2 cut(s)	577, 812
BstACI	GRCGYC	1 cut(s)	305
BstC8I	GCNNGC	5 cut(s)	319, 451, 551, 625, 874
BstDEI	CTNAG	5 cut(s)	153, 717, 818, 883, 1230
BstDSI	CCRYGG	2 cut(s)	739, 956
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	2 cut(s)	623, 625
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	4 cut(s)	307, 625, 627, 1067
BstKTI	GATC	6 cut(s)	348, 433, 568, 943, 999, 1111
BstMAI	GTCTC	1 cut(s)	1146
BstMBI	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
BstMWI	GCNNNNNNNGC	4 cut(s)	1071, 1178, 1205, 1226
BstNI	CCWGG	2 cut(s)	588, 735
BstSCI	CCNGG	3 cut(s)	586, 632, 733
BstSLI	GKGCMC	1 cut(s)	1135
BstUI	CGCG	2 cut(s)	623, 625
BstV2I	GAAGAC	1 cut(s)	786
BstXI	CCANNNNNNTGG	1 cut(s)	1045
BsuRI	GGCC	2 cut(s)	402, 738
BtgI	CCRYGG	2 cut(s)	739, 956
BtrI	CACGTC	2 cut(s)	109, 1140
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	5 cut(s)	319, 451, 551, 625, 874
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	4 cut(s)	307, 625, 627, 1067
Cfr10I	RCCGGY	2 cut(s)	1121, 1216
Cfr13I	GGNCC	4 cut(s)	257, 286, 731, 1223
Csp6I	GTAC	5 cut(s)	696, 769, 813, 1149, 1214
CviAII	CATG	7 cut(s)	19, 569, 740, 852, 910, 957, 1080
CviQI	GTAC	5 cut(s)	696, 769, 813, 1149, 1214
DdeI	CTNAG	5 cut(s)	153, 717, 818, 883, 1230
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	6 cut(s)	347, 432, 567, 942, 998, 1110
DpnII	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
EaeI	YGGCCR	1 cut(s)	400
Eco130I	CCWWGG	5 cut(s)	289, 403, 739, 956, 1068
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	4 cut(s)	257, 286, 731, 1223
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	586, 733
EcoRV	GATATC	1 cut(s)	904
EcoT14I	CCWWGG	5 cut(s)	289, 403, 739, 956, 1068
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	5 cut(s)	289, 403, 739, 956, 1068
Esp3I	CGTCTC	1 cut(s)	1146
FaeI	CATG	7 cut(s)	22, 572, 743, 855, 913, 960, 1083
FaqI	GGGAC	2 cut(s)	238, 1042
FatI	CATG	7 cut(s)	18, 568, 739, 851, 909, 956, 1079
FokI	GGATG	1 cut(s)	43
FspBI	CTAG	2 cut(s)	86, 873
GlaI	GCGC	4 cut(s)	306, 624, 626, 1066
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	402, 738
HapII	CCGG	4 cut(s)	633, 666, 1122, 1217
HhaI	GCGC	4 cut(s)	307, 625, 627, 1067
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	7 cut(s)	22, 572, 743, 855, 913, 960, 1083
Hin6I	GCGC	4 cut(s)	305, 623, 625, 1065
HinP1I	GCGC	4 cut(s)	305, 623, 625, 1065
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	4, 795, 843, 961
HpaII	CCGG	4 cut(s)	633, 666, 1122, 1217
HphI	GGTGA	4 cut(s)	110, 565, 701, 1111
Hpy166II	GTNNAC	3 cut(s)	640, 731, 1133
Hpy188I	TCNGA	3 cut(s)	145, 662, 886
Hpy188III	TCNNGA	7 cut(s)	69, 481, 847, 910, 944, 994, 1015
Hpy8I	GTNNAC	3 cut(s)	640, 731, 1133
Hpy99I	CGWCG	1 cut(s)	938
HpyAV	CCTTC	4 cut(s)	66, 759, 785, 1081
HpyCH4III	ACNGT	2 cut(s)	577, 812
HpyCH4IV	ACGT	6 cut(s)	26, 108, 537, 560, 642, 1139
HpyCH4V	TGCA	7 cut(s)	131, 188, 264, 317, 584, 678, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1071, 1178, 1205, 1226
HpyF3I	CTNAG	5 cut(s)	153, 717, 818, 883, 1230
HpySE526I	ACGT	6 cut(s)	26, 108, 537, 560, 642, 1139
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	7 cut(s)	22, 572, 743, 855, 913, 960, 1083
HspAI	GCGC	4 cut(s)	305, 623, 625, 1065
KasI	GGCGCC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	699
Kzo9I	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
LmnI	GCTCC	2 cut(s)	274, 1213
LweI	GCATC	4 cut(s)	169, 197, 304, 1195
MaeI	CTAG	2 cut(s)	86, 873
MaeII	ACGT	6 cut(s)	26, 108, 537, 560, 642, 1139
MaeIII	GTNAC	6 cut(s)	22, 109, 571, 577, 643, 721
MalI	GATC	6 cut(s)	347, 432, 567, 942, 998, 1110
MboI	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
MboII	GAAGA	3 cut(s)	323, 791, 1066
MfeI	CAATTG	2 cut(s)	684, 1167
MhlI	GDGCHC	1 cut(s)	1135
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	7 cut(s)	101, 139, 323, 684, 888, 1115, 1167
MluNI	TGGCCA	1 cut(s)	402
Mly113I	GGCGCC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	8 cut(s)	70, 148, 271, 827, 876, 892, 1019, 1197
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	4 cut(s)	363, 459, 513, 804
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	4 cut(s)	633, 666, 1122, 1217
MspR9I	CCNGG	3 cut(s)	588, 634, 735
MunI	CAATTG	2 cut(s)	684, 1167
MvaI	CCWGG	2 cut(s)	588, 735
MvnI	CGCG	2 cut(s)	623, 625
MwoI	GCNNNNNNNGC	4 cut(s)	1071, 1178, 1205, 1226
NarI	GGCGCC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	634
NcoI	CCATGG	2 cut(s)	739, 956
NdeII	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
NheI	GCTAGC	1 cut(s)	872
NlaIII	CATG	7 cut(s)	22, 572, 743, 855, 913, 960, 1083
NlaIV	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
NmuCI	GTSAC	3 cut(s)	109, 571, 577
PagI	TCATGA	1 cut(s)	909
PauI	GCGCGC	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	795, 843, 961
PflMI	CCANNNNNTGG	1 cut(s)	740
PluTI	GGCGCC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	257
PshBI	ATTAAT	1 cut(s)	459
Psp1406I	AACGTT	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	586, 733
PspGI	CCWGG	2 cut(s)	586, 733
PspN4I	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
PspPI	GGNCC	4 cut(s)	257, 286, 731, 1223
PspPPI	RGGWCCY	1 cut(s)	257
PteI	GCGCGC	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	1229
RsaI	GTAC	5 cut(s)	697, 770, 814, 1150, 1215
RsaNI	GTAC	5 cut(s)	696, 769, 813, 1149, 1214
SaqAI	TTAA	4 cut(s)	363, 459, 513, 804
Sau3AI	GATC	6 cut(s)	345, 430, 565, 940, 996, 1108
Sau96I	GGNCC	4 cut(s)	257, 286, 731, 1223
ScrFI	CCNGG	3 cut(s)	588, 634, 735
SduI	GDGCHC	1 cut(s)	1135
SfaNI	GCATC	4 cut(s)	169, 197, 304, 1195
SfoI	GGCGCC	1 cut(s)	306
SinI	GGWCC	4 cut(s)	257, 286, 731, 1223
SmlI	CTYRAG	1 cut(s)	867
SmoI	CTYRAG	1 cut(s)	867
Sse9I	AATT	7 cut(s)	101, 139, 323, 684, 888, 1115, 1167
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	86, 873
StyD4I	CCNGG	3 cut(s)	586, 632, 733
StyI	CCWWGG	5 cut(s)	289, 403, 739, 956, 1068
TaaI	ACNGT	2 cut(s)	577, 812
TaiI	ACGT	6 cut(s)	29, 111, 540, 563, 645, 1142
TaqI	TCGA	5 cut(s)	62, 329, 348, 564, 986
TasI	AATT	7 cut(s)	101, 139, 323, 684, 888, 1115, 1167
TfiI	GAWTC	3 cut(s)	795, 843, 961
Tru1I	TTAA	4 cut(s)	363, 459, 513, 804
Tru9I	TTAA	4 cut(s)	363, 459, 513, 804
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	3 cut(s)	109, 571, 577
Tsp45I	GTSAC	3 cut(s)	109, 571, 577
TspDTI	ATGAA	3 cut(s)	21, 926, 972
TspGWI	ACGGA	1 cut(s)	1032
TspRI	CASTG	1 cut(s)	586
Van91I	CCANNNNNTGG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	1131
VpaK11BI	GGWCC	4 cut(s)	257, 286, 731, 1223
VspI	ATTAAT	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	3 cut(s)	101, 888, 1115
XspI	CTAG	2 cut(s)	86, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.