Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014175

Physical Location & Seq

Genomic Coordinates Reverse (-)

5366937 .. 5368705

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1066400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGAGAGCTCAAGTTTCATGAGAAGAAGCTGCTGAAGAAAGTGAACTTCTTGGAATGGAAGAGAGAAGAAGGTCACAGAGAAACTCAGGTTCTGCAGCGTTACCATGTCACCGGTCGCGACGACTACAAAAAGTACTCGGGTTTGTGCCGGATGGTGCACAAGCTGGTGAACATATTGAAGCAGTTGAACCCGAACGATCCGTATCGGATCGAAATGACCGATATGCTCTTGGAAAAACTGTATAATATCGGTGTTATACCATCCAAGCAAAGCTTAGCATTATGTGAGCGCTTATCGGTGTCATCCCTTTGCAGACGTAGGCTTGCAACTGTGTTGGTTCGTCTGAAGTTTGCTGAGCACCTGAAAGAAGCTGTCACGTACATCGAGCAAGGGCACATTCGAGTTGGTCCGGAGACTGTTACCGACCCAGCATTCCTTGTGACAAGGAATATGGAAGATTTCATTACGTGGGTTGATTCATCGAAGATTAGGAGAAAGGTGTTGCAGTACAATGACAAGCTGGACGATTATGATGCGATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034457 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

183

Amino Acids

21.64

Weight (kDa)

9.38

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	4 - 92	1.2e-17	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	107 - 153	8.2e-11	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15750
fragaria_vesca	FvH4_6g46310
malus_domestica	MD09G1075700.v1.1 MD17G1066400.v1.1
prunus_persica	Prupe.3G248300_v2.0.a1
pyrus_communis	pycom09g00310 pycom17g06690
rosa_chinensis	RchiOBHm_Chr2g0164761
rosa_laevigata	RLG00000021483
rosa_multiflora	Rmu_sc0000946.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086320
rosa_rugosa	Rorug02G0510000
rosa_samantha	Rh2AG578300 Rh2BG589400 Rh2CG560000 Rh2DG599800
rosa_wichuraiana	Rw2G048010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	412
AclWI	GGATC	2 cut(s)	194, 218
AcuI	CTGAAG	2 cut(s)	56, 368
AfaI	GTAC	3 cut(s)	137, 383, 512
AfeI	AGCGCT	1 cut(s)	293
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	181, 190
AluBI	AGCT	6 cut(s)	10, 31, 166, 276, 374, 523
AluI	AGCT	6 cut(s)	10, 31, 166, 276, 374, 523
Alw21I	GWGCWC	3 cut(s)	12, 162, 363
Alw26I	GTCTC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	194, 218
AlwNI	CAGNNNCTG	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	139
Aor13HI	TCCGGA	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	293
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	31, 97
AsiGI	ACCGGT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	103, 181
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	2 cut(s)	162, 399
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	3 cut(s)	12, 162, 363
BbvI	GCAGC	2 cut(s)	18, 109
BccI	CCATC	2 cut(s)	148, 271
BcgI	CGANNNNNNTGC	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	2 cut(s)	32, 98
BlpI	GCTNAGC	2 cut(s)	277, 357
BlsI	GCNGC	2 cut(s)	33, 99
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	410
BmsI	GCATC	1 cut(s)	526
Bpu1102I	GCTNAGC	2 cut(s)	277, 357
BsaAI	YACGTR	2 cut(s)	381, 471
BsaBI	GATNNNNATC	1 cut(s)	204
BsaWI	WCCGGW	2 cut(s)	113, 412
Bse118I	RCCGGY	1 cut(s)	113
Bse8I	GATNNNNATC	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	412
BseGI	GGATG	3 cut(s)	159, 263, 305
BseJI	GATNNNNATC	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	101, 348
BseSI	GKGCMC	2 cut(s)	162, 399
BseXI	GCAGC	2 cut(s)	18, 109
BseYI	CCCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	118
BshTI	ACCGGT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	3 cut(s)	12, 162, 363
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	114, 151, 413
BsmAI	GTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	4 cut(s)	12, 162, 363, 399
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	199, 210
Bsp1720I	GCTNAGC	2 cut(s)	277, 357
Bsp68I	TCGCGA	1 cut(s)	120
BspCNI	CTCAG	2 cut(s)	100, 349
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	194, 218
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	2 cut(s)	199, 210
Bst4CI	ACNGT	3 cut(s)	243, 334, 421
Bst6I	CTCTTC	1 cut(s)	56
BstBAI	YACGTR	2 cut(s)	381, 471
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	87, 277, 357
BstF5I	GGATG	3 cut(s)	159, 263, 305
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	2 cut(s)	202, 213
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	199, 210
BstMCI	CGRYCG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	95
BstSLI	GKGCMC	2 cut(s)	162, 399
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	18, 109
BtsCI	GGATG	3 cut(s)	159, 263, 305
BtuMI	TCGCGA	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	94
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	136, 382, 511
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	2 cut(s)	20, 107
CviJI	RGCY	7 cut(s)	10, 31, 166, 276, 325, 374, 523
CviKI_1	RGCY	7 cut(s)	10, 31, 166, 276, 325, 374, 523
CviQI	GTAC	3 cut(s)	136, 382, 511
DdeI	CTNAG	3 cut(s)	87, 277, 357
DpnI	GATC	2 cut(s)	201, 212
DpnII	GATC	2 cut(s)	199, 210
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	410
Eco47III	AGCGCT	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	56, 368
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	2 cut(s)	23, 110
FaiI	YATR	9 cut(s)	21, 108, 176, 227, 246, 260, 286, 455, 534
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	2 cut(s)	19, 106
Fnu4HI	GCNGC	2 cut(s)	32, 98
FokI	GGATG	3 cut(s)	166, 250, 292
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	32, 98
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	32, 98
GsaI	CCCAGC	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	295
HapII	CCGG	3 cut(s)	114, 151, 413
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	23, 110
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	3 cut(s)	114, 151, 413
HphI	GGTGA	2 cut(s)	103, 181
Hpy166II	GTNNAC	3 cut(s)	46, 160, 172
Hpy188I	TCNGA	2 cut(s)	210, 348
Hpy188III	TCNNGA	3 cut(s)	20, 119, 413
Hpy8I	GTNNAC	3 cut(s)	46, 160, 172
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	3 cut(s)	243, 334, 421
HpyCH4IV	ACGT	3 cut(s)	319, 380, 470
HpyCH4V	TGCA	5 cut(s)	97, 160, 315, 329, 508
HpyF3I	CTNAG	3 cut(s)	87, 277, 357
HpySE526I	ACGT	3 cut(s)	319, 380, 470
Hsp92II	CATG	2 cut(s)	23, 110
HspAI	GCGC	1 cut(s)	292
Kpn2I	TCCGGA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	199, 210
LpnPI	CCDG	8 cut(s)	74, 127, 152, 164, 377, 426, 444, 509
Lsp1109I	GCAGC	2 cut(s)	18, 109
LweI	GCATC	1 cut(s)	526
MaeII	ACGT	3 cut(s)	319, 380, 470
MaeIII	GTNAC	6 cut(s)	74, 101, 109, 376, 421, 442
MalI	GATC	2 cut(s)	201, 212
MboI	GATC	2 cut(s)	199, 210
MboII	GAAGA	6 cut(s)	37, 49, 73, 80, 470, 499
MhlI	GDGCHC	4 cut(s)	12, 162, 363, 399
MroI	TCCGGA	1 cut(s)	412
MspI	CCGG	3 cut(s)	114, 151, 413
Mva1269I	GAATGC	1 cut(s)	434
MvnI	CGCG	1 cut(s)	120
NdeII	GATC	2 cut(s)	199, 210
NlaIII	CATG	2 cut(s)	23, 110
NmuCI	GTSAC	4 cut(s)	74, 109, 376, 442
NruI	TCGCGA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	479
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	33, 99
Ppu21I	YACGTR	2 cut(s)	381, 471
Psp124BI	GAGCTC	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	94
RruI	TCGCGA	1 cut(s)	120
RsaI	GTAC	3 cut(s)	137, 383, 512
RsaNI	GTAC	3 cut(s)	136, 382, 511
SacI	GAGCTC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	32, 98
Sau3AI	GATC	2 cut(s)	199, 210
Sau96I	GGNCC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	137
SduI	GDGCHC	4 cut(s)	12, 162, 363, 399
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	243, 334, 421
TaiI	ACGT	3 cut(s)	322, 383, 473
TaqI	TCGA	4 cut(s)	213, 387, 403, 485
TaqII	GACCGA	1 cut(s)	236
TatI	WGTACW	2 cut(s)	135, 510
TfiI	GAWTC	1 cut(s)	479
TseFI	GTSAC	4 cut(s)	74, 109, 376, 442
TseI	GCWGC	2 cut(s)	31, 97
Tsp45I	GTSAC	4 cut(s)	74, 109, 376, 442
TspDTI	ATGAA	3 cut(s)	8, 454, 471
TspGWI	ACGGA	1 cut(s)	192
VneI	GTGCAC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.