Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014175

Physical Location & Seq

Genomic Coordinates Reverse (-)

5345816 .. 5347625

Gene Structure 1810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1075700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGGAGCTCAAGTTTCATGAGAAGAAGCTGCTGAAGAAAGTTAACTTCTTGGACTGGAAAAGAGAAGCAGGTCACAGAGAAACCCAGGTTCTGCAGCGCTACCATGTCACCGGTCGCGACGACTACAAAAAGTACTCGGGTTTGTGCCGGATGGTGCAGAAGCTGGTGCACATATTGAAGCAGTTGAACCCGAACGATCCGTATCGGATCGAAATGACCGATATGCTCTTGGAAAAACTGTACAATATCGGTGTGATACCATCCAAGCAAAGCTTGGCATTGTGTGAACGCTTGTCGGTGTCATCCCTTTGCAGACGGAGGCTTTCAACCGTTTTGGTTCGATTGAAGTTTGCTGAACACCTGAAAGAAGCTGTCACATACATCGAGCAAGGACACATCCGTGTCGGTCCAGAAACTGTTACTGACCCAGCATTCCTCGTGACAAGGAATATGGAAGATTTCATTACATGGGTGGATTCATCGAAGATTAGGAGAAAGGTGCTGCAGTACAATGACAAGCTGGACGACTACGATGCAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034457 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

183

Amino Acids

21.6

Weight (kDa)

9.47

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	4 - 92	4.8e-18	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	107 - 153	2.1e-10	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15750
fragaria_vesca	FvH4_6g46310
malus_domestica	MD09G1075700.v1.1 MD17G1066400.v1.1
prunus_persica	Prupe.3G248300_v2.0.a1
pyrus_communis	pycom09g00310 pycom17g06690
rosa_chinensis	RchiOBHm_Chr2g0164761
rosa_laevigata	RLG00000021483
rosa_multiflora	Rmu_sc0000946.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086320
rosa_rugosa	Rorug02G0510000
rosa_samantha	Rh2AG578300 Rh2BG589400 Rh2CG560000 Rh2DG599800
rosa_wichuraiana	Rw2G048010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AccII	CGCG	1 cut(s)	120
AclWI	GGATC	2 cut(s)	194, 218
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	3 cut(s)	137, 245, 512
AfeI	AGCGCT	1 cut(s)	101
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	181, 190, 330, 349
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	6 cut(s)	10, 31, 166, 276, 374, 523
AluI	AGCT	6 cut(s)	10, 31, 166, 276, 374, 523
Alw21I	GWGCWC	2 cut(s)	12, 174
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	194, 218
AlwNI	CAGNNNCTG	3 cut(s)	94, 166, 419
Ama87I	CYCGRG	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	101
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	3 cut(s)	31, 97, 505
AsiGI	ACCGGT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	12, 174
BbvI	GCAGC	3 cut(s)	18, 109, 492
BccI	CCATC	2 cut(s)	148, 271
BcgI	CGANNNNNNTGC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	95, 506
BfoI	RGCGCY	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	32, 98, 506
BlsI	GCNGC	3 cut(s)	33, 99, 507
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	4 cut(s)	159, 263, 305, 399
BseJI	GATNNNNATC	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	18, 109, 492
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	118
BshTI	ACCGGT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	12, 174
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	114, 151
BsmI	GAATGC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	12, 174
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	199, 210
Bsp68I	TCGCGA	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	19
BspMAI	CTGCAG	2 cut(s)	99, 510
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	194, 218
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	199, 210
BssSI	CACGAG	1 cut(s)	440
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	243, 334, 421
BstAUI	TGTACA	1 cut(s)	243
BstF5I	GGATG	4 cut(s)	159, 263, 305, 399
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	202, 213
BstMBI	GATC	2 cut(s)	199, 210
BstMCI	CGRYCG	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	2 cut(s)	95, 506
BstSLI	GKGCMC	1 cut(s)	174
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	18, 109, 492
BtsCI	GGATG	4 cut(s)	159, 263, 305, 399
BtuMI	TCGCGA	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	62
CaiI	CAGNNNCTG	3 cut(s)	94, 166, 419
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	136, 244, 511
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	3 cut(s)	20, 107, 471
CviJI	RGCY	7 cut(s)	10, 31, 166, 276, 325, 374, 523
CviKI_1	RGCY	7 cut(s)	10, 31, 166, 276, 325, 374, 523
CviQI	GTAC	3 cut(s)	136, 244, 511
DpnI	GATC	2 cut(s)	201, 212
DpnII	GATC	2 cut(s)	199, 210
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	410
Eco47III	AGCGCT	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	3 cut(s)	23, 110, 474
FaiI	YATR	7 cut(s)	21, 108, 176, 227, 382, 455, 472
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	3 cut(s)	19, 106, 470
Fnu4HI	GCNGC	3 cut(s)	32, 98, 506
FokI	GGATG	4 cut(s)	166, 250, 292, 386
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	3 cut(s)	32, 98, 506
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	3 cut(s)	32, 98, 506
GsaI	CCCAGC	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	103
HapII	CCGG	2 cut(s)	114, 151
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	23, 110, 474
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	1 cut(s)	479
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	114, 151
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	3 cut(s)	46, 172, 290
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	4 cut(s)	20, 119, 413, 442
Hpy8I	GTNNAC	3 cut(s)	46, 172, 290
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	3 cut(s)	243, 334, 421
HpyCH4V	TGCA	6 cut(s)	97, 160, 172, 315, 508, 539
Hsp92II	CATG	3 cut(s)	23, 110, 474
HspAI	GCGC	1 cut(s)	100
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	199, 210
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	3 cut(s)	18, 109, 492
LweI	GCATC	1 cut(s)	526
MaeIII	GTNAC	5 cut(s)	74, 109, 376, 421, 442
MalI	GATC	2 cut(s)	201, 212
MboI	GATC	2 cut(s)	199, 210
MboII	GAAGA	4 cut(s)	37, 49, 470, 499
MhlI	GDGCHC	2 cut(s)	12, 174
MluCI	AATT	1 cut(s)	544
MnlI	CCTC	2 cut(s)	315, 449
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	2 cut(s)	114, 151
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	120
NdeII	GATC	2 cut(s)	199, 210
NlaIII	CATG	3 cut(s)	23, 110, 474
NmuCI	GTSAC	4 cut(s)	74, 109, 376, 442
NruI	TCGCGA	1 cut(s)	120
OliI	CACNNNNGTG	1 cut(s)	402
PagI	TCATGA	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	479
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	33, 99, 507
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	410
PstI	CTGCAG	2 cut(s)	99, 510
PstNI	CAGNNNCTG	3 cut(s)	94, 166, 419
RruI	TCGCGA	1 cut(s)	120
RsaI	GTAC	3 cut(s)	137, 245, 512
RsaNI	GTAC	3 cut(s)	136, 244, 511
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	3 cut(s)	32, 98, 506
Sau3AI	GATC	2 cut(s)	199, 210
Sau96I	GGNCC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	12, 174
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	2 cut(s)	95, 506
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	544
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	243, 334, 421
TaqI	TCGA	4 cut(s)	213, 343, 387, 485
TaqII	GACCGA	2 cut(s)	236, 398
TasI	AATT	1 cut(s)	544
TatI	WGTACW	3 cut(s)	135, 243, 510
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	4 cut(s)	74, 109, 376, 442
TseI	GCWGC	3 cut(s)	31, 97, 505
Tsp45I	GTSAC	4 cut(s)	74, 109, 376, 442
TspDTI	ATGAA	3 cut(s)	8, 454, 471
TspGWI	ACGGA	3 cut(s)	192, 334, 392
VneI	GTGCAC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.