Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011180

Physical Location & Seq

Genomic Coordinates Reverse (-)

5144091 .. 5144580

Gene Structure 490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTGAGACATTCAAGATCCGAAAACTGGAGATCTCCGATAAGAGAAAAGGATTCATCGAGCTTCTAGGTCAACTAACCGTCACCGGATCAGTAACAGACGAAGAATTCGATCGGCGATTCGAAGAAATCAGATCGTATGGTGACGACCACGTGATCTGCGTGATCGAAGAAGAAACTTCGGGAAAAATCGCTGCTACGGGTAGTGTGATGATAGAGAAGAAGTTTCTGAGGAATTGCGGTAAAGCTGGGCACATTGAAGACGTTGTTGTGGATTCAAGGTTTCGCGGGAAACAGCTGGGGAAGAAAGTTGTTGAGTTTCTTATGGATCATTGCAAATCAATGGGTTGCTATAAGGTGATTCTAGATTGTAGTGTGGAGAACAAAGTGTTCTATGAGAAATGTGGGATGAGTAATAAATCGATTCAAATGTCTAAGTACTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004343 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006040 GO:0006044 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055086 GO:0071704 GO:1901071 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

149

Amino Acids

17.03

Weight (kDa)

6.83

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	34 - 137	1.8e-15	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	50 - 136	1e-09	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	75 - 137	4.1e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15770
fragaria_vesca	FvH4_6g18700
malus_domestica	MD06G1040400.v1.1 MD14G1023000.v1.1
prunus_persica	Prupe.7G110200_v2.0.a1 Prupe.7G110200_v2.0.a1
pyrus_communis	pycom06g03370 pycom14g02190
rosa_chinensis	RchiOBHm_Chr3g0473671
rosa_laevigata	RLG00000023995
rosa_multiflora	Rmu_sc0003069.1_g000004 Rmu_sc0004984.1_g000005 Rmu_sc0005978.1_g000003
rosa_roxburghii	Rroxscaffold_6G00407960
rosa_rugosa	Rorug03G0133800
rosa_samantha	Rh3AG185400 Rh3BG213400 Rh3CG210100 Rh3DG209100
rosa_wichuraiana	Rw0G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AciI	CCGC	2 cut(s)	240, 288
AclWI	GGATC	3 cut(s)	13, 97, 336
AcsI	RAATTY	1 cut(s)	107
AcvI	CACGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	16, 260, 279, 428
AluBI	AGCT	3 cut(s)	64, 248, 298
AluI	AGCT	3 cut(s)	64, 248, 298
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	3 cut(s)	13, 97, 336
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AsuHPI	GGTGA	3 cut(s)	76, 155, 370
AsuII	TTCGAA	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	2 cut(s)	68, 365
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	50
Bpu14I	TTCGAA	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	422
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	2 cut(s)	248, 298
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	422
BsiEI	CGRYCG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	2
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
BspACI	CCGC	2 cut(s)	240, 288
BspCNI	CTCAG	1 cut(s)	222
BspDI	ATCGAT	1 cut(s)	422
BspFNI	CGCG	1 cut(s)	288
BspPI	GGATC	3 cut(s)	13, 97, 336
BspT104I	TTCGAA	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	33
BssMI	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
Bst4CI	ACNGT	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	123
BstDEI	CTNAG	3 cut(s)	6, 230, 435
BstF5I	GGATG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	8 cut(s)	21, 36, 92, 115, 137, 159, 168, 331
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
BstMCI	CGRYCG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	255
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	18, 33
BstYI	RGATCY	2 cut(s)	18, 33
Bsu15I	ATCGAT	1 cut(s)	422
BsuTUI	ATCGAT	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	439
CviJI	RGCY	4 cut(s)	5, 64, 248, 298
CviKI_1	RGCY	4 cut(s)	5, 64, 248, 298
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	6, 230, 435
DpnI	GATC	8 cut(s)	20, 35, 91, 114, 136, 158, 167, 330
DpnII	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
Eco72I	CACGTG	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	107
FaiI	YATR	4 cut(s)	141, 326, 354, 396
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	68, 365
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	2 cut(s)	252, 302
GsuI	CTGGAG	1 cut(s)	50
HapII	CCGG	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	5 cut(s)	54, 120, 275, 361, 424
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	3 cut(s)	76, 155, 370
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	4 cut(s)	23, 40, 134, 231
Hpy188III	TCNNGA	3 cut(s)	16, 183, 365
Hpy8I	GTNNAC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	153, 264
HpyCH4V	TGCA	1 cut(s)	336
HpyF3I	CTNAG	3 cut(s)	6, 230, 435
HpySE526I	ACGT	2 cut(s)	153, 264
Kzo9I	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
LpnPI	CCDG	4 cut(s)	14, 100, 234, 284
Lsp1109I	GCAGC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	68, 365
MaeII	ACGT	2 cut(s)	153, 264
MaeIII	GTNAC	3 cut(s)	82, 94, 143
MalI	GATC	8 cut(s)	20, 35, 91, 114, 136, 158, 167, 330
MboI	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
MboII	GAAGA	7 cut(s)	116, 137, 182, 185, 232, 272, 316
MflI	RGATCY	2 cut(s)	18, 33
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	107, 235
MnlI	CCTC	1 cut(s)	225
MseI	TTAA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	288
NdeII	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
NmuCI	GTSAC	2 cut(s)	82, 143
NspV	TTCGAA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 159
PfeI	GAWTC	5 cut(s)	54, 120, 275, 361, 424
PkrI	GCNGC	1 cut(s)	196
Ple19I	CGATCG	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	154
PmlI	CACGTG	1 cut(s)	154
Ppu21I	YACGTR	1 cut(s)	154
PspCI	CACGTG	1 cut(s)	154
PspFI	CCCAGC	2 cut(s)	248, 298
PsuI	RGATCY	2 cut(s)	18, 33
PvuI	CGATCG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	8 cut(s)	18, 33, 89, 112, 134, 156, 165, 328
ScaI	AGTACT	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	8 cut(s)	66, 73, 156, 250, 267, 284, 300, 360
SfuI	TTCGAA	1 cut(s)	123
Sse9I	AATT	2 cut(s)	107, 235
SsiI	CCGC	2 cut(s)	240, 288
SspMI	CTAG	2 cut(s)	68, 365
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	156, 267
TaqI	TCGA	6 cut(s)	60, 111, 123, 168, 422, 444
TasI	AATT	2 cut(s)	107, 235
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	5 cut(s)	54, 120, 275, 361, 424
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TseFI	GTSAC	2 cut(s)	82, 143
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	2 cut(s)	82, 143
TspDTI	ATGAA	1 cut(s)	46
XapI	RAATTY	1 cut(s)	107
XbaI	TCTAGA	1 cut(s)	364
XspI	CTAG	2 cut(s)	68, 365
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.