Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011180

Physical Location & Seq

Genomic Coordinates Reverse (-)

30517707 .. 30519321

Gene Structure 1615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCAAGCAATGAAGGACAGAAATTCGAAGTTAGAAAACTAGAGCTCTCAGACAAAAGCAAGGGATTTATAGAACTACTGCGGCAGCTAACCACTTGCGATTCTGTATCTGACAAAGACTTTGAAGATCGATTCATGGAGCTTCAGTCCCGTGCTGAAGACCATCAGGTGTTTGTTATAGAAGATGATCGTTCTGGGAAGATTGTTGCAACTGGAAGTGTGTTCATTGAAAGGAAGTTTATAAGGAACTGTGGTAAAGTTGGGCACATTGAAGACGTTGTGGTTGATTCCAATGCTCGCGGATTGCATTTAGGGAAAAAAATTATTGATTCCCTCACGGATTATGCTCATTCTGTGGGCTGTTATAAGGTGATTCTTGATTGCAGTGTTGATAATAAAGCATTCTATGAGAAATGTGGCTACAAGCAGAAAGAAATTCAGATGGCGAAGTATTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004343 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006040 GO:0006044 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055086 GO:0071704 GO:1901071 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

153

Amino Acids

17.48

Weight (kDa)

6.1

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	39 - 141	7.9e-18	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	47 - 145	1.7e-08	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	54 - 143	4.1e-12	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15770
fragaria_vesca	FvH4_6g18700
malus_domestica	MD06G1040400.v1.1 MD14G1023000.v1.1
prunus_persica	Prupe.7G110200_v2.0.a1 Prupe.7G110200_v2.0.a1
pyrus_communis	pycom06g03370 pycom14g02190
rosa_chinensis	RchiOBHm_Chr3g0473671
rosa_laevigata	RLG00000023995
rosa_multiflora	Rmu_sc0003069.1_g000004 Rmu_sc0004984.1_g000005 Rmu_sc0005978.1_g000003
rosa_roxburghii	Rroxscaffold_6G00407960
rosa_rugosa	Rorug03G0133800
rosa_samantha	Rh3AG185400 Rh3BG213400 Rh3CG210100 Rh3DG209100
rosa_wichuraiana	Rw0G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	242, 366
AccII	CGCG	1 cut(s)	300
AciI	CCGC	2 cut(s)	82, 300
AcsI	RAATTY	2 cut(s)	23, 435
AcuI	CTGAAG	2 cut(s)	128, 177
AgsI	TTSAA	3 cut(s)	125, 230, 272
AluBI	AGCT	3 cut(s)	46, 88, 142
AluI	AGCT	3 cut(s)	46, 88, 142
Alw21I	GWGCWC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	2 cut(s)	23, 435
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	165, 279
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	171, 436
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	2 cut(s)	83, 86
BlsI	GCNGC	2 cut(s)	84, 87
BpiI	GAAGAC	2 cut(s)	165, 279
Bpu14I	TTCGAA	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	300
BshVI	ATCGAT	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	48, 267
Bsp143I	GATC	2 cut(s)	127, 187
BspACI	CCGC	2 cut(s)	82, 300
BspCNI	CTCAG	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	127, 187
Bst4CI	ACNGT	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	7, 298
BstDEI	CTNAG	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	130, 190
BstMBI	GATC	2 cut(s)	127, 187
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	2 cut(s)	165, 279
Bsu15I	ATCGAT	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	7, 298
ClaI	ATCGAT	1 cut(s)	130
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	5 cut(s)	46, 88, 142, 360, 420
CviKI_1	RGCY	5 cut(s)	46, 88, 142, 360, 420
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	2 cut(s)	129, 189
DpnII	GATC	2 cut(s)	127, 187
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	128, 177
EcoICRI	GAGCTC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	139
FaiI	YATR	7 cut(s)	71, 137, 179, 242, 345, 366, 408
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	83, 86
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	83, 86
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	2 cut(s)	83, 86
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	5 cut(s)	101, 132, 287, 329, 373
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	52, 112, 441
Hpy188III	TCNNGA	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	209, 307, 384
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	127, 187
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	3 cut(s)	152, 180, 198
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	276
MalI	GATC	2 cut(s)	129, 189
MboI	GATC	2 cut(s)	127, 187
MboII	GAAGA	5 cut(s)	137, 170, 194, 211, 284
MhlI	GDGCHC	2 cut(s)	48, 267
MluCI	AATT	3 cut(s)	23, 321, 435
MnlI	CCTC	1 cut(s)	344
MroXI	GAANNNNTTC	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	401
MvnI	CGCG	1 cut(s)	300
NdeII	GATC	2 cut(s)	127, 187
NlaIII	CATG	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	27
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	5 cut(s)	101, 132, 287, 329, 373
PkrI	GCNGC	2 cut(s)	84, 87
PsiI	TTATAA	2 cut(s)	242, 366
Psp124BI	GAGCTC	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	48
SatI	GCNGC	2 cut(s)	83, 86
Sau3AI	GATC	2 cut(s)	127, 187
SduI	GDGCHC	2 cut(s)	48, 267
SetI	ASST	6 cut(s)	48, 90, 144, 171, 279, 372
SfuI	TTCGAA	1 cut(s)	27
Sse9I	AATT	3 cut(s)	23, 321, 435
SsiI	CCGC	2 cut(s)	82, 300
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	27, 130
TasI	AATT	3 cut(s)	23, 321, 435
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	5 cut(s)	101, 132, 287, 329, 373
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	4 cut(s)	27, 124, 214, 445
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	23, 435
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.