Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011180

Physical Location & Seq

Genomic Coordinates Forward (+)

2068097 .. 2069926

Gene Structure 1830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1023000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCAAACAGTGAAGAACACAATTTCCAAGTTAGGAAGCTAGAACTCTCAGACAAAGGCAAGGGATTCATAGAACTACTGCAACAGCTGACCGTTTGTGATTCTGTATCCGACAAGGACTTTGAAGATCGATTTAAGGAGCTTAGTGCCCGAGCAGAGGACCATCAGGTCTTTGTAATAGAAGATGATCGCTCCGGGAAGATTGTGGCAACTGGGAGTGTGTTCATTGAAAGGAAGTTTATAAGAAACTGTGGCAAAGTCGGGCACATTGAAGACGTTGTGGTTGATGCCAATGCGCGTGGGATGCAGTTAGGAAAGAAGATGATTGACGCCCTTACGGATTATGCTCACTCGTTGGGGTGTTATAAGGTGATTCTCGATTGCAGTGTTGAGAACAAGGCGTTCTATGAGAAATGTGGGTACAAGCAGAAGGAGATTCAGATGGTGAAGTACTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004343 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006040 GO:0006044 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055086 GO:0071704 GO:1901071 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

154

Amino Acids

17.48

Weight (kDa)

5.83

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	36 - 141	1.2e-18	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	46 - 146	8.7e-09	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	54 - 143	3.2e-13	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15770
fragaria_vesca	FvH4_6g18700
malus_domestica	MD06G1040400.v1.1 MD14G1023000.v1.1
prunus_persica	Prupe.7G110200_v2.0.a1 Prupe.7G110200_v2.0.a1
pyrus_communis	pycom06g03370 pycom14g02190
rosa_chinensis	RchiOBHm_Chr3g0473671
rosa_laevigata	RLG00000023995
rosa_multiflora	Rmu_sc0003069.1_g000004 Rmu_sc0004984.1_g000005 Rmu_sc0005978.1_g000003
rosa_roxburghii	Rroxscaffold_6G00407960
rosa_rugosa	Rorug03G0133800
rosa_samantha	Rh3AG185400 Rh3BG213400 Rh3CG210100 Rh3DG209100
rosa_wichuraiana	Rw0G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	242, 366
AasI	GACNNNNNNGTC	1 cut(s)	167
AccII	CGCG	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	422, 452
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	125, 230, 272
AloI	GAACNNNNNNTCC	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	40, 88, 142
AluI	AGCT	3 cut(s)	40, 88, 142
Ama87I	CYCGRG	1 cut(s)	150
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	382, 457
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	2 cut(s)	151, 267
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	2 cut(s)	171, 436
BciVI	GTATCC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	196
BfaI	CTAG	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	118
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	277, 294
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	130
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	2 cut(s)	151, 267
Bsh1236I	CGCG	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	151, 267
Bsp143I	GATC	2 cut(s)	127, 187
BspCNI	CTCAG	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	127, 187
BssNI	GRCGYC	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	11, 94, 251
BstACI	GRCGYC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	49, 143
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	130, 190
BstMBI	GATC	2 cut(s)	127, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	194
BstSLI	GKGCMC	2 cut(s)	151, 267
BstUI	CGCG	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	118
BsuTUI	ATCGAT	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	16, 391
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	130
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	421, 451
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviJI	RGCY	3 cut(s)	40, 88, 142
CviKI_1	RGCY	3 cut(s)	40, 88, 142
CviQI	GTAC	2 cut(s)	421, 451
DdeI	CTNAG	2 cut(s)	49, 143
DpnI	GATC	2 cut(s)	129, 189
DpnII	GATC	2 cut(s)	127, 187
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	150
FaiI	YATR	5 cut(s)	71, 242, 345, 366, 408
FokI	GGATG	1 cut(s)	316
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	4 cut(s)	66, 101, 373, 436
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	382, 457
Hpy188I	TCNGA	4 cut(s)	52, 112, 441, 461
Hpy188III	TCNNGA	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	3 cut(s)	11, 94, 251
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	82, 307, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	2 cut(s)	49, 143
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	330
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	127, 187
LmnI	GCTCC	2 cut(s)	139, 197
LpnPI	CCDG	3 cut(s)	152, 198, 208
LweI	GCATC	2 cut(s)	277, 294
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	276
MalI	GATC	2 cut(s)	129, 189
MboI	GATC	2 cut(s)	127, 187
MboII	GAAGA	6 cut(s)	26, 137, 194, 211, 284, 331
MhlI	GDGCHC	2 cut(s)	151, 267
MluCI	AATT	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	127, 187
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	4 cut(s)	66, 101, 373, 436
PfoI	TCCNGGA	1 cut(s)	194
PsiI	TTATAA	2 cut(s)	242, 366
PspPI	GGNCC	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	422, 452
RsaNI	GTAC	2 cut(s)	421, 451
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	127, 187
Sau96I	GGNCC	1 cut(s)	160
ScaI	AGTACT	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	151, 267
SetI	ASST	6 cut(s)	42, 90, 144, 171, 279, 372
SfaNI	GCATC	2 cut(s)	277, 294
SinI	GGWCC	1 cut(s)	160
Sse9I	AATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	3 cut(s)	11, 94, 251
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	130, 378
TasI	AATT	1 cut(s)	22
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	4 cut(s)	66, 101, 373, 436
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	16, 391
TspDTI	ATGAA	3 cut(s)	58, 214, 445
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	16, 391
VpaK11BI	GGWCC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.