FvH4_6g18700

Glucosamine 6-phosphate

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
12333664 .. 12335222
1559 bp
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UTR
Exon/CDS
Intron
FvH4_6g18700.t1

Sequence Viewer

Length: 462 bp
ATGGCAAGCAATGAGGAACAGAAATTCCAAGTTAGAAAATTAGAGCTCTCAGATAAAAGCAAGGGCTTTATAGAACTACTGCGACAGCTAACCACTTGCGACTCTGTATCTGACAAAGACTTTGAAGATCGGTTCATGGAGCTTCAGTCTCGTGCTGAAGACCATCAGGTGTTTGTTATAGAAGATGATCGTTCTGGGAAGATAGTTGCAACTGGGAGTGTGTTCATTGAAAGGAAGTTTATAAGGAACTGTGGTAAAGTTGGGCACATTGAAGATGTTGTGGTTGACTCCAATGCTCGTGGATTGCATTTAGGGAAAAAACTTATTAATTCCCTCACAGATTATGCTCATTCTGTGGGCTGTTATAAGGTGATTCTTGATTGCAGTGTTGATAATAAAGCATTCTATGAGAAATGTGGCTACAAGCAGAAAGAAATTCAGATGGTGAAGTATTTCATTTGA

Protein Analysis

154

Amino Acids

17.58

Weight (kDa)

6.43

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 39 - 141 7.5e-19 Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 47 - 146 4.7e-09 Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 54 - 143 8.3e-13 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 242, 366
AcsI RAATTY 2 cut(s) 23, 435
AcuI CTGAAG 2 cut(s) 128, 177
AgsI TTSAA 3 cut(s) 125, 230, 272
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 3 cut(s) 46, 88, 142
AluI AGCT 3 cut(s) 46, 88, 142
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 23, 435
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AseI ATTAAT 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 382, 457
BaeGI GKGCMC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 2 cut(s) 150, 297
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 48
BccI CCATC 2 cut(s) 171, 436
BcoDI GTCTC 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 48, 267
Bsp143I GATC 2 cut(s) 127, 187
BspCNI CTCAG 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 217
BssMI GATC 2 cut(s) 127, 187
BssSI CACGAG 2 cut(s) 150, 297
Bst2BI CACGAG 2 cut(s) 150, 297
Bst4CI ACNGT 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 49
BstKTI GATC 2 cut(s) 130, 190
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 2 cut(s) 127, 187
BstSLI GKGCMC 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 1 cut(s) 136
CviJI RGCY 6 cut(s) 46, 66, 88, 142, 360, 420
CviKI_1 RGCY 6 cut(s) 46, 66, 88, 142, 360, 420
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 129, 189
DpnII GATC 2 cut(s) 127, 187
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 128, 177
EcoICRI GAGCTC 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 139
FaiI YATR 7 cut(s) 71, 137, 179, 242, 345, 366, 408
FatI CATG 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 3 cut(s) 101, 287, 373
HphI GGTGA 2 cut(s) 382, 457
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 52, 112, 441
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 3 cut(s) 209, 307, 384
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 2 cut(s) 127, 187
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 3 cut(s) 152, 180, 198
MalI GATC 2 cut(s) 129, 189
MboI GATC 2 cut(s) 127, 187
MboII GAAGA 5 cut(s) 137, 170, 194, 211, 284
MhlI GDGCHC 2 cut(s) 48, 267
MluCI AATT 4 cut(s) 23, 38, 328, 435
MlyI GAGTC 2 cut(s) 95, 281
MnlI CCTC 2 cut(s) 7, 344
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 401
NdeII GATC 2 cut(s) 127, 187
NlaIII CATG 1 cut(s) 139
PctI GAATGC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 373
PleI GAGTC 2 cut(s) 95, 281
PpsI GAGTC 2 cut(s) 95, 281
PshBI ATTAAT 1 cut(s) 327
PsiI TTATAA 2 cut(s) 242, 366
Psp124BI GAGCTC 1 cut(s) 48
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 327
Sau3AI GATC 2 cut(s) 127, 187
SchI GAGTC 2 cut(s) 95, 281
SduI GDGCHC 2 cut(s) 48, 267
SetI ASST 5 cut(s) 48, 90, 144, 171, 372
Sse9I AATT 4 cut(s) 23, 38, 328, 435
SstI GAGCTC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 251
TasI AATT 4 cut(s) 23, 38, 328, 435
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 124, 214, 445
TspRI CASTG 1 cut(s) 391
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 2 cut(s) 23, 435
XmnI GAANNNNTTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.