Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011180

Physical Location & Seq

Genomic Coordinates Forward (+)

10916238 .. 10951570

Gene Structure 35333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0133800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAGGTTTCAATAGTCAAAGATGGTCTCTAAAGGGTATGACCGCCCTCGTCACGGGTGGAACTAAAGGCATTGGATTTGCCACTGTAGACGAGCTAGCTGGACTTGGAGCGACTGTACATACATGTGCACGCAACCAAGCACAGCTGGAAGAGAGGGTTAGAGAATGGAAGAACAAGGGTTTCAAAGTGAGCGGTTCAGTTTGCGATATCAACTCGAAATCTGAAAGAGAGGAGCTCATTAAGACCGTCTCCACTATTTTTGACGGCATGCTTAACATCCTAGTAAACAATGCCGCAACAGTTACACTCAGAAGTACAACAGAATATACTTTGGAAGATTTTTCGAGTATGATGGGCACCAATGTTGAATCTCCCTACCATCTTTGCCAACTTGCATACCCTTTCCTGAAGGCATCAAGAAATGCAAGTATTGTATTTATCGCCTCCATAGCTGGTGTCATAGCTCTACCTAGACTATCCGCTTATGCAGGATCAAAGAGTGCACTGATCCAAATTTCAAAGAATCTGGCATGTGAATGGGCAAGAGACAACATTCGAACAAACACTGTGGCACCATGGGCTGTAAACACTGGCGTTAAAGTTGAAGAAAATGATGGTCATCTTGATGATTTCAGACGTCTAATAGGTCGAACTCCCATCGGTCGCATTGCAGAGCCTAATGAAATTTCATCGCTCGTGACCTTCCTTTGCCTCCCTGCTGCTTCTTACATCAATGGACAAGTTGTTAGTGTCGATGGAGGATTTACTGTTTGCGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004343 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006040 GO:0006044 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055086 GO:0071704 GO:1901071 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

261

Amino Acids

28.19

Weight (kDa)

7.59

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 205	4.2e-47	short chain dehydrogenase
KR	PF08659	15 - 169	1.2e-12	KR domain
adh_short_C2	PF13561	23 - 257	3e-51	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15770
fragaria_vesca	FvH4_6g18700
malus_domestica	MD06G1040400.v1.1 MD14G1023000.v1.1
prunus_persica	Prupe.7G110200_v2.0.a1 Prupe.7G110200_v2.0.a1
pyrus_communis	pycom06g03370 pycom14g02190
rosa_chinensis	RchiOBHm_Chr3g0473671
rosa_laevigata	RLG00000023995
rosa_multiflora	Rmu_sc0003069.1_g000004 Rmu_sc0004984.1_g000005 Rmu_sc0005978.1_g000003
rosa_roxburghii	Rroxscaffold_6G00407960
rosa_rugosa	Rorug03G0133800
rosa_samantha	Rh3AG185400 Rh3BG213400 Rh3CG210100 Rh3DG209100
rosa_wichuraiana	Rw0G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	643
AccB1I	GGYRCC	2 cut(s)	359, 574
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	5 cut(s)	45, 195, 297, 483, 777
AclWI	GGATC	2 cut(s)	502, 505
AcsI	RAATTY	2 cut(s)	516, 687
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	640
AfaI	GTAC	2 cut(s)	120, 319
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	13, 187, 371, 522, 608
AluBI	AGCT	6 cut(s)	97, 101, 148, 238, 455, 467
AluI	AGCT	6 cut(s)	97, 101, 148, 238, 455, 467
Alw21I	GWGCWC	3 cut(s)	133, 240, 508
Alw26I	GTCTC	3 cut(s)	33, 256, 543
Alw44I	GTGCAC	2 cut(s)	129, 504
AlwI	GGATC	2 cut(s)	502, 505
ApaLI	GTGCAC	2 cut(s)	129, 504
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	516, 687
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	97
BaeGI	GKGCMC	3 cut(s)	133, 362, 508
BanI	GGYRCC	2 cut(s)	359, 574
BanII	GRGCYC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	698
Bbv12I	GWGCWC	3 cut(s)	133, 240, 508
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	6 cut(s)	18, 349, 390, 611, 668, 752
BceAI	ACGGC	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	33, 256, 543
BfaI	CTAG	3 cut(s)	98, 284, 474
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	2 cut(s)	297, 723
BlsI	GCNGC	2 cut(s)	298, 724
BmiI	GGNNCC	2 cut(s)	361, 576
BmsI	GCATC	1 cut(s)	425
BmtI	GCTAGC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
Bpu14I	TTCGAA	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	1 cut(s)	640
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	578
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	3 cut(s)	133, 362, 508
BseXI	GCAGC	1 cut(s)	709
Bsh1285I	CGRYCG	1 cut(s)	667
BshNI	GGYRCC	2 cut(s)	359, 574
BsiEI	CGRYCG	1 cut(s)	667
BsiHKAI	GWGCWC	3 cut(s)	133, 240, 508
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	3 cut(s)	33, 256, 543
BsmBI	CGTCTC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	4 cut(s)	133, 240, 362, 508
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	494, 510
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	5 cut(s)	45, 195, 297, 483, 777
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	361, 576
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	2 cut(s)	502, 505
BspT104I	TTCGAA	1 cut(s)	559
BspT107I	GGYRCC	2 cut(s)	359, 574
BspTNI	GGTCTC	1 cut(s)	33
BsrBI	CCGCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	669
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	2 cut(s)	494, 510
BssNI	GRCGYC	1 cut(s)	640
BssSI	CACGAG	1 cut(s)	698
BssT1I	CCWWGG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	698
Bst4CI	ACNGT	6 cut(s)	88, 118, 250, 304, 571, 772
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	640
BstAUI	TGTACA	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	99, 133, 272
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	2 cut(s)	497, 513
BstMAI	GTCTC	3 cut(s)	33, 256, 543
BstMBI	GATC	2 cut(s)	494, 510
BstMCI	CGRYCG	1 cut(s)	667
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 581
BstNSI	RCATGY	3 cut(s)	129, 274, 537
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	3 cut(s)	133, 362, 508
BstV1I	GCAGC	1 cut(s)	709
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	4 cut(s)	84, 506, 567, 591
Cac8I	GCNNGC	3 cut(s)	99, 133, 272
Csp6I	GTAC	2 cut(s)	119, 318
CspCI	CAANNNNNGTGG	4 cut(s)	244, 279, 552, 587
CviAII	CATG	4 cut(s)	126, 271, 534, 579
CviJI	RGCY	8 cut(s)	97, 101, 148, 238, 455, 467, 584, 679
CviKI_1	RGCY	8 cut(s)	97, 101, 148, 238, 455, 467, 584, 679
CviQI	GTAC	2 cut(s)	119, 318
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	2 cut(s)	496, 512
DpnII	GATC	2 cut(s)	494, 510
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	4 cut(s)	129, 274, 537, 582
FatI	CATG	4 cut(s)	125, 270, 533, 578
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	297, 723
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	297, 723
FspBI	CTAG	3 cut(s)	98, 284, 474
GluI	GCNGC	2 cut(s)	297, 723
Hin1I	GRCGYC	1 cut(s)	640
Hin1II	CATG	4 cut(s)	129, 274, 537, 582
HinfI	GANTC	2 cut(s)	371, 526
Hpy166II	GTNNAC	5 cut(s)	91, 131, 289, 506, 589
Hpy188I	TCNGA	3 cut(s)	226, 314, 638
Hpy188III	TCNNGA	4 cut(s)	409, 420, 626, 700
Hpy8I	GTNNAC	5 cut(s)	91, 131, 289, 506, 589
HpyAV	CCTTC	2 cut(s)	406, 715
HpyCH4III	ACNGT	6 cut(s)	88, 118, 250, 304, 571, 772
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	6 cut(s)	131, 398, 428, 491, 506, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 581
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	640
Hsp92I	GRCGYC	1 cut(s)	640
Hsp92II	CATG	4 cut(s)	129, 274, 537, 582
Kzo9I	GATC	2 cut(s)	494, 510
LmnI	GCTCC	2 cut(s)	110, 235
LpnPI	CCDG	8 cut(s)	87, 134, 422, 441, 477, 515, 579, 732
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	98, 284, 474
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	3 cut(s)	52, 304, 700
MalI	GATC	2 cut(s)	496, 512
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	2 cut(s)	494, 510
MboII	GAAGA	4 cut(s)	164, 184, 350, 620
MhlI	GDGCHC	4 cut(s)	133, 240, 362, 508
MluCI	AATT	2 cut(s)	516, 687
MnlI	CCTC	6 cut(s)	59, 150, 226, 457, 725, 755
MseI	TTAA	3 cut(s)	243, 276, 600
MslI	CAYNNNNRTG	3 cut(s)	126, 538, 627
MspA1I	CMGCKG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	452, 581
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	2 cut(s)	494, 510
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	129, 274, 537, 582
NlaIV	GGNNCC	2 cut(s)	361, 576
NmuCI	GTSAC	2 cut(s)	52, 700
NspI	RCATGY	3 cut(s)	129, 274, 537
NspV	TTCGAA	1 cut(s)	559
PaeI	GCATGC	1 cut(s)	274
PciI	ACATGT	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	371, 526
PkrI	GCNGC	2 cut(s)	298, 724
PscI	ACATGT	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	361, 576
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	120, 319
RsaNI	GTAC	2 cut(s)	119, 318
RseI	CAYNNNNRTG	3 cut(s)	126, 538, 627
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	243, 276, 600
SatI	GCNGC	2 cut(s)	297, 723
Sau3AI	GATC	2 cut(s)	494, 510
SduI	GDGCHC	4 cut(s)	133, 240, 362, 508
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	559
SmiMI	CAYNNNNRTG	3 cut(s)	126, 538, 627
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	2 cut(s)	516, 687
SsiI	CCGC	5 cut(s)	45, 195, 297, 483, 777
SspMI	CTAG	3 cut(s)	98, 284, 474
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	6 cut(s)	88, 118, 250, 304, 571, 772
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	5 cut(s)	218, 347, 559, 652, 756
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	2 cut(s)	516, 687
TatI	WGTACW	2 cut(s)	118, 317
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	371, 526
Tru1I	TTAA	3 cut(s)	243, 276, 600
Tru9I	TTAA	3 cut(s)	243, 276, 600
TscAI	CASTG	4 cut(s)	91, 513, 574, 598
TseFI	GTSAC	2 cut(s)	52, 700
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	2 cut(s)	52, 700
TspDTI	ATGAA	2 cut(s)	681, 699
TspRI	CASTG	4 cut(s)	91, 513, 574, 598
VneI	GTGCAC	2 cut(s)	129, 504
XapI	RAATTY	2 cut(s)	516, 687
XceI	RCATGY	3 cut(s)	129, 274, 537
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	3 cut(s)	98, 284, 474
ZraI	GACGTC	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.