Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011180

Physical Location & Seq

Genomic Coordinates Reverse (-)

5201301 .. 5202452

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1040400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGAGGAGTGAAGGGCAAACTTTTCGAGTCCGAAAATTAGAGATGTCAGATAAAAGCAAGGGTTTCATACAACTGTTGCAACAGCTAACTGTTTGTGATTCTGTATCTGACAAGGAGTTTGCAGATAGGTTCGGAGAGATTAGCTCCCTCGGAGATGACCATGTTATCTGTGTTATAGAAGATGATCGCTCGGGGAAGATTATTGCAACTGGAAGCGTGTTCATCGAGAAGAAGTTCATCAGGAACTGTGGCAAAGTCGGTCACATTGAAGACATTGTGGTTGACGCTGATGCTCGTGGGATGCAGTTAGGGAAGAAAATCATTAGCTTCCTCACGGATCATGCTCGTTCTGTCGGGTGTTATAAGGTGATTCTTGATTGCAGCAACGAGAACAGAGCATTCTATGAGAAGTGCGGCTTCAAGCAGAAAGAAATTCAGATGGTCAAGTATTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004343 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006040 GO:0006044 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055086 GO:0071704 GO:1901071 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

154

Amino Acids

17.36

Weight (kDa)

6.82

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	39 - 141	1e-17	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	54 - 143	1.9e-13	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	81 - 145	4.9e-08	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15770
fragaria_vesca	FvH4_6g18700
malus_domestica	MD06G1040400.v1.1 MD14G1023000.v1.1
prunus_persica	Prupe.7G110200_v2.0.a1 Prupe.7G110200_v2.0.a1
pyrus_communis	pycom06g03370 pycom14g02190
rosa_chinensis	RchiOBHm_Chr3g0473671
rosa_laevigata	RLG00000023995
rosa_multiflora	Rmu_sc0003069.1_g000004 Rmu_sc0004984.1_g000005 Rmu_sc0005978.1_g000003
rosa_roxburghii	Rroxscaffold_6G00407960
rosa_rugosa	Rorug03G0133800
rosa_samantha	Rh3AG185400 Rh3BG213400 Rh3CG210100 Rh3DG209100
rosa_wichuraiana	Rw0G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	272, 424
AluBI	AGCT	3 cut(s)	88, 147, 330
AluI	AGCT	3 cut(s)	88, 147, 330
AlwI	GGATC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	435
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	193
BauI	CACGAG	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BisI	GCNGC	2 cut(s)	385, 418
BlsI	GCNGC	2 cut(s)	386, 419
BmeT110I	CYCGRG	1 cut(s)	193
BmsI	GCATC	2 cut(s)	283, 294
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BsaJI	CCNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	187, 340
BspACI	CCGC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	187, 340
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	78, 94, 251
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	2 cut(s)	190, 343
BstMBI	GATC	2 cut(s)	187, 340
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	249
CseI	GACGC	1 cut(s)	296
CviAII	CATG	2 cut(s)	164, 344
CviJI	RGCY	4 cut(s)	88, 147, 330, 420
CviKI_1	RGCY	4 cut(s)	88, 147, 330, 420
DpnI	GATC	2 cut(s)	189, 342
DpnII	GATC	2 cut(s)	187, 340
Eco88I	CYCGRG	1 cut(s)	193
FaeI	CATG	2 cut(s)	167, 347
FaiI	YATR	6 cut(s)	71, 165, 179, 345, 366, 408
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	2 cut(s)	163, 343
Fnu4HI	GCNGC	2 cut(s)	385, 418
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	385, 418
GluI	GCNGC	2 cut(s)	385, 418
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	167, 347
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	30, 101, 373
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	6 cut(s)	35, 52, 112, 137, 155, 441
Hpy188III	TCNNGA	3 cut(s)	229, 244, 377
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	3 cut(s)	78, 94, 251
HpyCH4V	TGCA	5 cut(s)	82, 125, 209, 307, 384
Hsp92II	CATG	2 cut(s)	167, 347
Kzo9I	GATC	2 cut(s)	187, 340
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	2 cut(s)	198, 229
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	283, 294
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	189, 342
MboI	GATC	2 cut(s)	187, 340
MboII	GAAGA	5 cut(s)	194, 211, 244, 284, 328
MluCI	AATT	2 cut(s)	38, 435
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	2 cut(s)	161, 344
MroXI	GAANNNNTTC	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	401
NdeII	GATC	2 cut(s)	187, 340
NlaIII	CATG	2 cut(s)	167, 347
NmuCI	GTSAC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	101, 373
PkrI	GCNGC	2 cut(s)	386, 419
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	249
SatI	GCNGC	2 cut(s)	385, 418
Sau3AI	GATC	2 cut(s)	187, 340
SchI	GAGTC	1 cut(s)	39
SetI	ASST	5 cut(s)	90, 134, 149, 332, 372
SfaNI	GCATC	2 cut(s)	283, 294
Sse9I	AATT	2 cut(s)	38, 435
SsiI	CCGC	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	78, 94, 251
TaqI	TCGA	2 cut(s)	28, 228
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	38, 435
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	101, 373
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	58, 214, 229
TspGWI	ACGGA	1 cut(s)	353
XapI	RAATTY	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.