Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012181

Physical Location & Seq

Genomic Coordinates Reverse (-)

5189376 .. 5192176

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGCTTGTTCATTCTGCAACATTTCCATGTAAACAAAAGCTACTCATCGCAGTGACCATTGCTACATCTCTTTTAACCATCATCCCTCTTCTCTACCCTTTGCTTGAAGACCCTAACTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAACCTCGAAAACGGTGTTGTAACATCACATGACAGCTGCGACATATTCTCGGGAGAGTGGGTTCCTAACCCTGAGGCACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAATTGCATGAAGTTTGGAAGACCCGACACGGATTTCATCAAATGGAAATGGAAACCTTACGGGTGCGAAGACGGCTTGCCGGTATTTGACCCGGTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTTTGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTTTCTCAGGTTGAATATCCGATGGATGCTTCGGTTAAGAATGACGATTATTTCAAACGATGGACATACGAAACATACAATTTCACGATCGCCGCATTTTGGACACCACACTTGGTTAAGTCCAAAGAACCCGACCAGACCCAGCCCAAGCATATTGATATTTTTGACCTATACCTTGATGAGGCAGACGAGAGTTGGACAGCCGATATAGGAGATTTTGACTTCGTAATCATCTCTTCTGGCCACTGGCATTACCGGCCATCAGTCTACTACGAAAACCGGACTATCACCGGTTGCCATTATTGCCAATTACCGAACATAACCGATCTCACAATGTTTTATGGGTATAGAAAAGCTTTTAGAACCGCGTTTAAAGCGATCTTGGATTCGGAAAGCTTCAAAGGCGTAATGTACTTACGAAGTTTTGCACCGTCACATTTTGAAGGCGGGTTGTGGAATGAAGGAGGAGATTGTTTGAGGAAACAACCTTATAGGAGCAATGAGACTCAAGACGAAACGACAATGAAGCTACACAAGATTCAGTTGGAAGAATTTTGGAGAGCTGAAGAAGAAGCGAAGAAGAAAGGGAAAAGGTTACGATTACTAGATACGACCCAAGCTATGTGGCTTAGACCCGACGGTCACCCAAGCCGCTACGGCCATATTCCAGAGGCCAATGTCACGTTGTACAACGACTGTGTCCACTGGTGCTTGCCCGGTCCTATCGACAACCTCAATGACTTCTTGCTGGCTATGCTAAAGAGAGAAGAAGACAAAGGATTCTTGGCGCAAGTTCGAAAAATGTTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

426

Amino Acids

49.53

Weight (kDa)

5.77

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	66 - 118	1.4e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	121 - 408	1.6e-91	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15900 AT5G15900
fragaria_vesca	FvH4_6g45640
malus_domestica	MD09G1081000.v1.1 MD17G1072200.v1.1
prunus_persica	Prupe.3G242500_v2.0.a1
pyrus_communis	pycom09g00740 pycom17g07170
rosa_chinensis	RchiOBHm_Chr2g0163781
rosa_laevigata	RLG00000021416
rosa_multiflora	Rmu_sc0001181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087030 Rroxscaffold_2G00087050
rosa_rugosa	Rorug02G0504600
rosa_samantha	Rh2AG572500 Rh2BG583100 Rh2CG554000 Rh2DG592800
rosa_wichuraiana	Rw2G047320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1107
AccB1I	GGYRCC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	735
AccII	CGCG	1 cut(s)	836
AciI	CCGC	4 cut(s)	561, 834, 915, 1120
AcoI	YGGCCR	3 cut(s)	709, 725, 1126
AcsI	RAATTY	1 cut(s)	1019
AcuI	CTGAAG	1 cut(s)	1053
AdeI	CACNNNGTG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	881, 1157
AfiI	CCNNNNNNNGG	2 cut(s)	567, 649
AgeI	ACCGGT	1 cut(s)	758
AgsI	TTSAA	5 cut(s)	110, 482, 523, 868, 911
AjiI	CACGTC	1 cut(s)	261
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	8 cut(s)	7, 43, 198, 824, 864, 997, 1031, 1088
AluI	AGCT	8 cut(s)	7, 43, 198, 824, 864, 997, 1031, 1088
Alw26I	GTCTC	1 cut(s)	965
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	4 cut(s)	709, 725, 1126, 1140
ApeKI	GCWGC	2 cut(s)	153, 198
ApoI	RAATTY	1 cut(s)	1019
AsiGI	ACCGGT	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	1258
AspS9I	GGNCC	1 cut(s)	1187
AsuC2I	CCSGG	2 cut(s)	377, 1185
AsuHPI	GGTGA	3 cut(s)	437, 748, 1103
AsuII	TTCGAA	1 cut(s)	1264
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	1187
AxyI	CCTNAGG	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	238
BbsI	GAAGAC	4 cut(s)	117, 310, 360, 1245
BbvI	GCAGC	2 cut(s)	165, 185
BccI	CCATC	4 cut(s)	89, 484, 522, 736
BceAI	ACGGC	2 cut(s)	373, 1141
BcnI	CCSGG	2 cut(s)	377, 1185
BcoDI	GTCTC	1 cut(s)	965
BfaI	CTAG	1 cut(s)	1073
BglI	GCCNNNNNGGC	1 cut(s)	1125
BisI	GCNGC	4 cut(s)	154, 199, 561, 1120
BlsI	GCNGC	4 cut(s)	155, 200, 562, 1121
Bme1390I	CCNGG	2 cut(s)	377, 1185
Bme18I	GGWCC	1 cut(s)	1187
BmeT110I	CYCGRG	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	1187
BmiI	GGNNCC	2 cut(s)	225, 240
BmrFI	CCNGG	2 cut(s)	377, 1185
BmsI	GCATC	2 cut(s)	165, 484
BpiI	GAAGAC	4 cut(s)	117, 310, 360, 1245
Bpu14I	TTCGAA	1 cut(s)	1264
BpuEI	CTTGAG	3 cut(s)	113, 410, 960
BpuMI	CCSGG	2 cut(s)	377, 1185
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	2 cut(s)	747, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	567, 649
Bse118I	RCCGGY	3 cut(s)	364, 723, 758
Bse1I	ACTGG	2 cut(s)	719, 1178
Bse21I	CCTNAGG	1 cut(s)	234
Bse3DI	GCAATG	2 cut(s)	60, 973
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	84, 499
BseLI	CCNNNNNNNGG	2 cut(s)	567, 649
BseMI	GCAATG	2 cut(s)	60, 973
BseMII	CTCAG	3 cut(s)	225, 444, 488
BseNI	ACTGG	2 cut(s)	719, 1178
BseRI	GAGGAG	1 cut(s)	948
BseXI	GCAGC	2 cut(s)	165, 185
BseYI	CCCAGC	2 cut(s)	264, 609
Bsh1236I	CGCG	1 cut(s)	836
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	4 cut(s)	711, 727, 1128, 1142
BshNI	GGYRCC	1 cut(s)	238
BshTI	ACCGGT	1 cut(s)	758
BsiEI	CGRYCG	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	6 cut(s)	365, 377, 724, 748, 759, 1185
BslI	CCNNNNNNNGG	2 cut(s)	567, 649
BsmAI	GTCTC	1 cut(s)	965
BsnI	GGCC	4 cut(s)	711, 727, 1128, 1142
BsoBI	CYCGRG	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	1264
Bsp1407I	TGTACA	1 cut(s)	1155
Bsp143I	GATC	5 cut(s)	393, 459, 555, 793, 846
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	4 cut(s)	561, 834, 915, 1120
BspANI	GGCC	4 cut(s)	711, 727, 1128, 1142
BspCNI	CTCAG	3 cut(s)	226, 443, 487
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	2 cut(s)	225, 240
BspT104I	TTCGAA	1 cut(s)	1264
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	60, 973
BsrFI	RCCGGY	3 cut(s)	364, 723, 758
BsrGI	TGTACA	1 cut(s)	1155
BsrI	ACTGG	2 cut(s)	719, 1178
BssAI	RCCGGY	3 cut(s)	364, 723, 758
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	5 cut(s)	393, 459, 555, 793, 846
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	4 cut(s)	176, 900, 1109, 1166
Bst6I	CTCTTC	2 cut(s)	96, 709
BstAUI	TGTACA	1 cut(s)	1155
BstBI	TTCGAA	1 cut(s)	1264
BstC8I	GCNNGC	3 cut(s)	362, 1181, 1218
BstDEI	CTNAG	4 cut(s)	234, 430, 474, 1097
BstDSI	CCRYGG	1 cut(s)	411
BstEII	GGTNACC	1 cut(s)	1109
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	84, 499
BstFNI	CGCG	1 cut(s)	836
BstHHI	GCGC	1 cut(s)	1258
BstKTI	GATC	5 cut(s)	396, 462, 558, 796, 849
BstMAI	GTCTC	1 cut(s)	965
BstMBI	GATC	5 cut(s)	393, 459, 555, 793, 846
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	8 cut(s)	153, 357, 724, 771, 842, 870, 1125, 1222
BstNSI	RCATGY	1 cut(s)	451
BstPI	GGTNACC	1 cut(s)	1109
BstSCI	CCNGG	2 cut(s)	375, 1183
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	2 cut(s)	165, 185
BstV2I	GAAGAC	4 cut(s)	117, 310, 360, 1245
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	711, 727, 1128, 1142
BtgI	CCRYGG	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	84, 499
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	60, 712, 1171
Cac8I	GCNNGC	3 cut(s)	362, 1181, 1218
CfoI	GCGC	1 cut(s)	1258
Cfr10I	RCCGGY	3 cut(s)	364, 723, 758
Cfr13I	GGNCC	1 cut(s)	1187
Csp6I	GTAC	2 cut(s)	880, 1156
CspAI	ACCGGT	1 cut(s)	758
CspCI	CAANNNNNGTGG	2 cut(s)	1073, 1108
CviAII	CATG	5 cut(s)	30, 191, 292, 412, 448
CviQI	GTAC	2 cut(s)	880, 1156
DdeI	CTNAG	4 cut(s)	234, 430, 474, 1097
DpnI	GATC	5 cut(s)	395, 461, 557, 795, 848
DpnII	GATC	5 cut(s)	393, 459, 555, 793, 846
DraI	TTTAAA	1 cut(s)	841
DraIII	CACNNNGTG	1 cut(s)	261
DrdI	GACNNNNNNGTC	1 cut(s)	1107
DseDI	GACNNNNNNGTC	1 cut(s)	1107
EaeI	YGGCCR	3 cut(s)	709, 725, 1126
Eam1104I	CTCTTC	2 cut(s)	96, 709
EarI	CTCTTC	2 cut(s)	96, 709
Eco130I	CCWWGG	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	1187
Eco57I	CTGAAG	1 cut(s)	1053
Eco81I	CCTNAGG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	1109
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	1109
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	5 cut(s)	33, 194, 295, 415, 451
FatI	CATG	5 cut(s)	29, 190, 291, 411, 447
FauI	CCCGC	1 cut(s)	908
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	4 cut(s)	154, 199, 561, 1120
FokI	GGATG	2 cut(s)	71, 506
Fsp4HI	GCNGC	4 cut(s)	154, 199, 561, 1120
FspBI	CTAG	1 cut(s)	1073
GlaI	GCGC	1 cut(s)	1257
GluI	GCNGC	4 cut(s)	154, 199, 561, 1120
GsaI	CCCAGC	2 cut(s)	268, 613
HaeIII	GGCC	4 cut(s)	711, 727, 1128, 1142
HapII	CCGG	6 cut(s)	365, 377, 724, 748, 759, 1185
HhaI	GCGC	1 cut(s)	1258
Hin1II	CATG	5 cut(s)	33, 194, 295, 415, 451
Hin6I	GCGC	1 cut(s)	1256
HinP1I	GCGC	1 cut(s)	1256
HindIII	AAGCTT	2 cut(s)	822, 862
HinfI	GANTC	5 cut(s)	428, 854, 973, 1006, 1248
HpaII	CCGG	6 cut(s)	365, 377, 724, 748, 759, 1185
HphI	GGTGA	3 cut(s)	437, 748, 1103
Hpy166II	GTNNAC	3 cut(s)	35, 736, 1171
Hpy188I	TCNGA	2 cut(s)	489, 859
Hpy188III	TCNNGA	6 cut(s)	213, 389, 397, 553, 977, 1136
Hpy8I	GTNNAC	3 cut(s)	35, 736, 1171
Hpy99I	CGWCG	2 cut(s)	262, 1109
HpyAV	CCTTC	3 cut(s)	476, 905, 923
HpyCH4III	ACNGT	4 cut(s)	176, 900, 1109, 1166
HpyCH4IV	ACGT	2 cut(s)	260, 1151
HpyCH4V	TGCA	4 cut(s)	20, 291, 451, 896
HpyF10VI	GCNNNNNNNGC	8 cut(s)	153, 357, 724, 771, 842, 870, 1125, 1222
HpyF3I	CTNAG	4 cut(s)	234, 430, 474, 1097
HpySE526I	ACGT	2 cut(s)	260, 1151
Hsp92II	CATG	5 cut(s)	33, 194, 295, 415, 451
HspAI	GCGC	1 cut(s)	1256
Kzo9I	GATC	5 cut(s)	393, 459, 555, 793, 846
LmnI	GCTCC	2 cut(s)	4, 963
Lsp1109I	GCAGC	2 cut(s)	165, 185
LweI	GCATC	2 cut(s)	165, 484
MaeI	CTAG	1 cut(s)	1073
MaeII	ACGT	2 cut(s)	260, 1151
MaeIII	GTNAC	7 cut(s)	55, 181, 425, 900, 1062, 1109, 1147
MalI	GATC	5 cut(s)	395, 461, 557, 795, 848
MboI	GATC	5 cut(s)	393, 459, 555, 793, 846
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	4 cut(s)	286, 547, 776, 1019
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	2 cut(s)	422, 967
MmeI	TCCRAC	2 cut(s)	644, 993
Mox20I	TGGCCA	1 cut(s)	711
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	4 cut(s)	77, 504, 585, 840
MslI	CAYNNNNRTG	2 cut(s)	28, 53
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	6 cut(s)	365, 377, 724, 748, 759, 1185
MspR9I	CCNGG	2 cut(s)	377, 1185
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	8 cut(s)	153, 357, 724, 771, 842, 870, 1125, 1222
NciI	CCSGG	2 cut(s)	377, 1185
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	5 cut(s)	393, 459, 555, 793, 846
NlaIII	CATG	5 cut(s)	33, 194, 295, 415, 451
NlaIV	GGNNCC	2 cut(s)	225, 240
NmuCI	GTSAC	5 cut(s)	55, 425, 900, 1109, 1147
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	1264
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	3 cut(s)	854, 1006, 1248
PflFI	GACNNNGTC	1 cut(s)	1166
PinAI	ACCGGT	1 cut(s)	758
PkrI	GCNGC	4 cut(s)	155, 200, 562, 1121
Ple19I	CGATCG	1 cut(s)	558
PleI	GAGTC	2 cut(s)	422, 967
PpsI	GAGTC	2 cut(s)	422, 967
PspEI	GGTNACC	1 cut(s)	1109
PspFI	CCCAGC	2 cut(s)	264, 609
PspN4I	GGNNCC	2 cut(s)	225, 240
PspPI	GGNCC	1 cut(s)	1187
PsyI	GACNNNGTC	1 cut(s)	1166
PvuI	CGATCG	1 cut(s)	558
PvuII	CAGCTG	1 cut(s)	198
RsaI	GTAC	2 cut(s)	881, 1157
RsaNI	GTAC	2 cut(s)	880, 1156
RseI	CAYNNNNRTG	2 cut(s)	28, 53
SaqAI	TTAA	4 cut(s)	77, 504, 585, 840
SatI	GCNGC	4 cut(s)	154, 199, 561, 1120
Sau3AI	GATC	5 cut(s)	393, 459, 555, 793, 846
Sau96I	GGNCC	1 cut(s)	1187
SchI	GAGTC	2 cut(s)	422, 967
ScrFI	CCNGG	2 cut(s)	377, 1185
SfaNI	GCATC	2 cut(s)	165, 484
SfuI	TTCGAA	1 cut(s)	1264
SinI	GGWCC	1 cut(s)	1187
SmiMI	CAYNNNNRTG	2 cut(s)	28, 53
SmlI	CTYRAG	3 cut(s)	128, 389, 975
SmoI	CTYRAG	3 cut(s)	128, 389, 975
Sse9I	AATT	4 cut(s)	286, 547, 776, 1019
SsiI	CCGC	4 cut(s)	561, 834, 915, 1120
SspMI	CTAG	1 cut(s)	1073
StyD4I	CCNGG	2 cut(s)	375, 1183
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	4 cut(s)	176, 900, 1109, 1166
TaiI	ACGT	2 cut(s)	263, 1154
TaqI	TCGA	3 cut(s)	168, 1194, 1264
TasI	AATT	4 cut(s)	286, 547, 776, 1019
TatI	WGTACW	2 cut(s)	879, 1155
TauI	GCSGC	2 cut(s)	563, 1122
TfiI	GAWTC	3 cut(s)	854, 1006, 1248
Tru1I	TTAA	4 cut(s)	77, 504, 585, 840
Tru9I	TTAA	4 cut(s)	77, 504, 585, 840
TscAI	CASTG	3 cut(s)	60, 719, 1178
TseFI	GTSAC	5 cut(s)	55, 425, 900, 1109, 1147
TseI	GCWGC	2 cut(s)	153, 198
Tsp45I	GTSAC	5 cut(s)	55, 425, 900, 1109, 1147
TspDTI	ATGAA	4 cut(s)	308, 310, 942, 1007
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	3 cut(s)	60, 719, 1178
Tth111I	GACNNNGTC	1 cut(s)	1166
VpaK11BI	GGWCC	1 cut(s)	1187
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	1 cut(s)	1019
XceI	RCATGY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.