Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012181

Physical Location & Seq

Genomic Coordinates Reverse (-)

23541990 .. 23545576

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G242500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAAGCACCACGACATTGAGCTTCCCTTTGGGAAAATATGCCAAGCACCACAAAAGGCACCAAAAAAAGTGGTGCTTCTAGTGTTTGCCCTACTTCTTCTCACAATCATCCCTCTCTATTACCCTTCAATAAGCCACTCCTTATTTGTGTCGGAAACTGTTAATTCAAACCCATTTGTGCCCTCTTCATCATCATCATCATCATCACAAGATCATTTAAATGATCATGTTCATGAGGAGGATGATTTGCCATCCGTAATAACTAGCAATTTAAAGTGTGACATATTTACTGGAGAATGGGTTCCAAATCCAGAGGCTCCCTATTACACAAACAAAACATGTTGGGCAATCCACGAACATCAAAACTGCATGAAGTATGGAAGACCAGACACAGAGTTCATGAAATGGAGGTGGAAGCCAGATGGGTGTGAGCTTCCTATTTTTAACCCGGCCCAGTTCCTAGAATTGCTTAGAGGCAAGTCCTTGGCCTTTGTTGGAGACTCTGTGGGCAGAAATCAAATGCAGTCCTTGATATGCCTCCTTTCTAGGGTGGAATATCCAATAGATGTTTCAATCACACCAGATCCAACTCAGAAATTCATACGCTGGAAATACATGTCCTACAACTTCACCATGGCAACATTTTGGACGCCACATTTGATCAAATCCAAAGAAGCAACCTACACGAACGGACCGACAAAGACGGGCCTTTTCGAGCTCTACCTCGATGAATTTGATGAGGCATGGACAACCAAAGTAGAGGAATTCGACTACATTATACTTTCTGCAGGCCATTGGTTCTTCCGTTCGATGGTTTACTATGAAAATCAAAAGATTTCAGGGTGCCACTATTGCCTCCTAGACAATGTGCCTGATGTAGGCATTTTCTATGGATATAGAAAGGCTTTTAGGTTAGCTTTTAAGGCCATAAACAGCTTACAAAATTATAAGGGCATAACCTATCTTAGGACTTTTGCACCGTCACATTTTGAAAACGGGCTGTGGAACCAAGGAGGTAACTGTTTGAGAACGACGCCGTTTCAGAGCAACGAGACACAATTGGAGGGTGCTAATTTGGAGCTTTACATGATCCAAATTGAGGAGTTTAGGAACGCTGAAAAAGAAGGGAGAAAAAAGGGTTTGAAATATAGGTTATTGGACACAACACAGGCCTCATTGTTAAGGCCAGATGGTCATCCTAGTAGATATGGGCACTGGCCACATGAAAATGTGACTTTGTATAATGACTGTGTGCATTGGTGCCTGCCGGGACCCATTGACACATGGAGTGATTTCTTGCTGGAGATGTTGAAGATGGAGGGTATGAGATCAGCTGAGGAGAAGAAGCTCATGCTTTCAAAAGACAGGAGATTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

460

Amino Acids

53.26

Weight (kDa)

6.36

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15900 AT5G15900
fragaria_vesca	FvH4_6g45640
malus_domestica	MD09G1081000.v1.1 MD17G1072200.v1.1
prunus_persica	Prupe.3G242500_v2.0.a1
pyrus_communis	pycom09g00740 pycom17g07170
rosa_chinensis	RchiOBHm_Chr2g0163781
rosa_laevigata	RLG00000021416
rosa_multiflora	Rmu_sc0001181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087030 Rroxscaffold_2G00087050
rosa_rugosa	Rorug02G0504600
rosa_samantha	Rh2AG572500 Rh2BG583100 Rh2CG554000 Rh2DG592800
rosa_wichuraiana	Rw2G047320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AccB1I	GGYRCC	3 cut(s)	58, 843, 1260
AclWI	GGATC	2 cut(s)	578, 1084
AcoI	YGGCCR	1 cut(s)	1217
AcsI	RAATTY	3 cut(s)	596, 731, 764
AcyI	GRCGYC	2 cut(s)	650, 1034
AfiI	CCNNNNNNNGG	5 cut(s)	547, 811, 878, 966, 1099
AflIII	ACRYGT	2 cut(s)	338, 615
AgsI	TTSAA	8 cut(s)	129, 168, 573, 992, 1144, 1312, 1359, 1375
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	8 cut(s)	22, 433, 718, 917, 936, 1081, 1334, 1348
AluI	AGCT	8 cut(s)	22, 433, 718, 917, 936, 1081, 1334, 1348
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	2 cut(s)	492, 1046
AlwI	GGATC	2 cut(s)	578, 1084
AoxI	GGCC	8 cut(s)	450, 486, 706, 790, 924, 1170, 1184, 1217
ApoI	RAATTY	3 cut(s)	596, 731, 764
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	4 cut(s)	451, 692, 706, 1271
AsuC2I	CCSGG	2 cut(s)	449, 1269
AsuHPI	GGTGA	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	692, 1271
BaeGI	GKGCMC	2 cut(s)	183, 1215
BalI	TGGCCA	1 cut(s)	1219
BanI	GGYRCC	3 cut(s)	58, 843, 1260
BanII	GRGCYC	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	1335
BccI	CCATC	5 cut(s)	259, 416, 805, 1184, 1309
BceAI	ACGGC	1 cut(s)	1021
BclI	TGATCA	2 cut(s)	223, 660
BcnI	CCSGG	2 cut(s)	449, 1269
BcoDI	GTCTC	2 cut(s)	492, 1046
BfaI	CTAG	6 cut(s)	80, 264, 461, 546, 860, 1200
BfmI	CTRYAG	1 cut(s)	786
Bme1390I	CCNGG	2 cut(s)	449, 1269
Bme18I	GGWCC	2 cut(s)	692, 1271
BmgT120I	GGNCC	4 cut(s)	451, 692, 706, 1271
BmiI	GGNNCC	8 cut(s)	60, 303, 318, 845, 1007, 1262, 1272, 1273
BmrFI	CCNGG	2 cut(s)	449, 1269
BmrI	ACTGGG	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	388
BpmI	CTGGAG	2 cut(s)	312, 1322
Bpu10I	CCTNAGC	1 cut(s)	1335
BpuMI	CCSGG	2 cut(s)	449, 1269
BsaBI	GATNNNNATC	1 cut(s)	1194
BsaHI	GRCGYC	2 cut(s)	650, 1034
BsaJI	CCNNGG	3 cut(s)	483, 633, 1009
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 489, 519
Bsc4I	CCNNNNNNNGG	5 cut(s)	547, 811, 878, 966, 1099
Bse1I	ACTGG	3 cut(s)	295, 454, 1220
Bse8I	GATNNNNATC	1 cut(s)	1194
BseDI	CCNNGG	3 cut(s)	483, 633, 1009
BseGI	GGATG	4 cut(s)	108, 247, 251, 1195
BseJI	GATNNNNATC	1 cut(s)	1194
BseLI	CCNNNNNNNGG	5 cut(s)	547, 811, 878, 966, 1099
BseMII	CTCAG	2 cut(s)	605, 1326
BseNI	ACTGG	3 cut(s)	295, 454, 1220
BseRI	GAGGAG	3 cut(s)	251, 1115, 1352
BseSI	GKGCMC	2 cut(s)	183, 1215
BshFI	GGCC	8 cut(s)	452, 488, 708, 792, 926, 1172, 1186, 1219
BshNI	GGYRCC	3 cut(s)	58, 843, 1260
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	449, 1268
BslFI	GGGAC	1 cut(s)	1284
BslI	CCNNNNNNNGG	5 cut(s)	547, 811, 878, 966, 1099
BsmAI	GTCTC	2 cut(s)	492, 1046
BsmFI	GGGAC	1 cut(s)	1284
BsnI	GGCC	8 cut(s)	452, 488, 708, 792, 926, 1172, 1186, 1219
Bsp1286I	GDGCHC	3 cut(s)	183, 720, 1215
Bsp143I	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
Bsp19I	CCATGG	1 cut(s)	633
BspANI	GGCC	8 cut(s)	452, 488, 708, 792, 926, 1172, 1186, 1219
BspCNI	CTCAG	2 cut(s)	604, 1327
BspHI	TCATGA	2 cut(s)	232, 399
BspLI	GGNNCC	8 cut(s)	60, 303, 318, 845, 1007, 1262, 1272, 1273
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	578, 1084
BspT107I	GGYRCC	3 cut(s)	58, 843, 1260
BsrI	ACTGG	3 cut(s)	295, 454, 1220
BssECI	CCNNGG	3 cut(s)	483, 633, 1009
BssMI	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
BssNI	GRCGYC	2 cut(s)	650, 1034
BssT1I	CCWWGG	3 cut(s)	483, 633, 1009
Bst4CI	ACNGT	4 cut(s)	160, 981, 1022, 1250
Bst6I	CTCTTC	1 cut(s)	190
BstACI	GRCGYC	2 cut(s)	650, 1034
BstC8I	GCNNGC	2 cut(s)	790, 1265
BstDEI	CTNAG	4 cut(s)	470, 591, 965, 1335
BstDSI	CCRYGG	1 cut(s)	633
BstENI	CCTNNNNNAGG	2 cut(s)	876, 964
BstF5I	GGATG	4 cut(s)	108, 247, 251, 1195
BstKTI	GATC	6 cut(s)	214, 226, 586, 663, 1092, 1331
BstMAI	GTCTC	2 cut(s)	492, 1046
BstMBI	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
BstMWI	GCNNNNNNNGC	2 cut(s)	852, 923
BstNSI	RCATGY	2 cut(s)	342, 619
BstSCI	CCNGG	2 cut(s)	447, 1267
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	2 cut(s)	183, 1215
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	8 cut(s)	452, 488, 708, 792, 926, 1172, 1186, 1219
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	4 cut(s)	108, 247, 251, 1195
BtsIMutI	CAGTG	1 cut(s)	1213
Cac8I	GCNNGC	2 cut(s)	790, 1265
CciI	TCATGA	2 cut(s)	232, 399
Cfr13I	GGNCC	4 cut(s)	451, 692, 706, 1271
CpoI	CGGWCCG	1 cut(s)	692
CseI	GACGC	2 cut(s)	658, 1042
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CspI	CGGWCCG	1 cut(s)	692
DdeI	CTNAG	4 cut(s)	470, 591, 965, 1335
DpnI	GATC	6 cut(s)	213, 225, 585, 662, 1091, 1330
DpnII	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
DraI	TTTAAA	2 cut(s)	219, 273
EaeI	YGGCCR	1 cut(s)	1217
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	3 cut(s)	483, 633, 1009
Eco147I	AGGCCT	1 cut(s)	1172
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	2 cut(s)	692, 1271
Eco53kI	GAGCTC	1 cut(s)	718
EcoICRI	GAGCTC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	2 cut(s)	876, 964
EcoO109I	RGGNCCY	1 cut(s)	1271
EcoRI	GAATTC	1 cut(s)	764
EcoT14I	CCWWGG	3 cut(s)	483, 633, 1009
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	3 cut(s)	483, 633, 1009
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	1 cut(s)	1284
FbaI	TGATCA	2 cut(s)	223, 660
FokI	GGATG	4 cut(s)	95, 238, 254, 1182
FriOI	GRGCYC	1 cut(s)	720
FspBI	CTAG	6 cut(s)	80, 264, 461, 546, 860, 1200
GsuI	CTGGAG	2 cut(s)	312, 1322
HaeIII	GGCC	8 cut(s)	452, 488, 708, 792, 926, 1172, 1186, 1219
HapII	CCGG	2 cut(s)	449, 1268
HgaI	GACGC	2 cut(s)	658, 1042
Hin1I	GRCGYC	2 cut(s)	650, 1034
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	2 cut(s)	449, 1268
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	817
Hpy188I	TCNGA	3 cut(s)	154, 594, 1044
Hpy188III	TCNNGA	3 cut(s)	233, 311, 400
Hpy8I	GTNNAC	1 cut(s)	817
Hpy99I	CGWCG	1 cut(s)	1036
HpyAV	CCTTC	2 cut(s)	135, 1118
HpyCH4III	ACNGT	4 cut(s)	160, 981, 1022, 1250
HpyCH4V	TGCA	5 cut(s)	369, 523, 788, 977, 1255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	852, 923
HpyF3I	CTNAG	4 cut(s)	470, 591, 965, 1335
Hsp92I	GRCGYC	2 cut(s)	650, 1034
KflI	GGGWCCC	1 cut(s)	1271
Ksp22I	TGATCA	2 cut(s)	223, 660
Kzo9I	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
LmnI	GCTCC	2 cut(s)	322, 1078
MaeI	CTAG	6 cut(s)	80, 264, 461, 546, 860, 1200
MaeIII	GTNAC	4 cut(s)	278, 981, 1016, 1231
MalI	GATC	6 cut(s)	213, 225, 585, 662, 1091, 1330
MboI	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
MboII	GAAGA	6 cut(s)	89, 177, 393, 793, 1324, 1354
MfeI	CAATTG	1 cut(s)	1058
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	3 cut(s)	183, 720, 1215
MlsI	TGGCCA	1 cut(s)	1219
MluNI	TGGCCA	1 cut(s)	1219
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	3 cut(s)	132, 475, 611
Mox20I	TGGCCA	1 cut(s)	1219
MroXI	GAANNNNTTC	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	1219
MseI	TTAA	7 cut(s)	162, 218, 272, 444, 921, 1181, 1378
MslI	CAYNNNNRTG	3 cut(s)	219, 231, 1227
Msp20I	TGGCCA	1 cut(s)	1219
MspA1I	CMGCKG	1 cut(s)	1334
MspI	CCGG	2 cut(s)	449, 1268
MspR9I	CCNGG	2 cut(s)	449, 1269
MunI	CAATTG	1 cut(s)	1058
MwoI	GCNNNNNNNGC	2 cut(s)	852, 923
NciI	CCSGG	2 cut(s)	449, 1269
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
NlaIV	GGNNCC	8 cut(s)	60, 303, 318, 845, 1007, 1262, 1272, 1273
NmuCI	GTSAC	3 cut(s)	278, 981, 1231
NspI	RCATGY	2 cut(s)	342, 619
PagI	TCATGA	2 cut(s)	232, 399
PceI	AGGCCT	1 cut(s)	1172
PciI	ACATGT	2 cut(s)	338, 615
PcsI	WCGNNNNNNNCGW	1 cut(s)	692
PdmI	GAANNNNTTC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	1271
PscI	ACATGT	2 cut(s)	338, 615
PsiI	TTATAA	1 cut(s)	948
Psp124BI	GAGCTC	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	1271
PspN4I	GGNNCC	8 cut(s)	60, 303, 318, 845, 1007, 1262, 1272, 1273
PspPI	GGNCC	4 cut(s)	451, 692, 706, 1271
PspPPI	RGGWCCY	1 cut(s)	1271
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	1334
RseI	CAYNNNNRTG	3 cut(s)	219, 231, 1227
Rsr2I	CGGWCCG	1 cut(s)	692
RsrII	CGGWCCG	1 cut(s)	692
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	7 cut(s)	162, 218, 272, 444, 921, 1181, 1378
Sau3AI	GATC	6 cut(s)	211, 223, 583, 660, 1089, 1328
Sau96I	GGNCC	4 cut(s)	451, 692, 706, 1271
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	449, 1269
SduI	GDGCHC	3 cut(s)	183, 720, 1215
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	2 cut(s)	692, 1271
SmiI	ATTTAAAT	1 cut(s)	219
SmiMI	CAYNNNNRTG	3 cut(s)	219, 231, 1227
SseBI	AGGCCT	1 cut(s)	1172
SspMI	CTAG	6 cut(s)	80, 264, 461, 546, 860, 1200
SstI	GAGCTC	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	1172
StyD4I	CCNGG	2 cut(s)	447, 1267
StyI	CCWWGG	3 cut(s)	483, 633, 1009
SwaI	ATTTAAAT	1 cut(s)	219
TaaI	ACNGT	4 cut(s)	160, 981, 1022, 1250
TaqI	TCGA	4 cut(s)	714, 726, 768, 809
TaqII	GACCGA	1 cut(s)	709
Tru1I	TTAA	7 cut(s)	162, 218, 272, 444, 921, 1181, 1378
Tru9I	TTAA	7 cut(s)	162, 218, 272, 444, 921, 1181, 1378
TscAI	CASTG	1 cut(s)	1220
TseFI	GTSAC	3 cut(s)	278, 981, 1231
Tsp45I	GTSAC	3 cut(s)	278, 981, 1231
TspGWI	ACGGA	3 cut(s)	244, 705, 794
TspRI	CASTG	1 cut(s)	1220
VpaK11BI	GGWCC	2 cut(s)	692, 1271
XagI	CCTNNNNNAGG	2 cut(s)	876, 964
XapI	RAATTY	3 cut(s)	596, 731, 764
XceI	RCATGY	2 cut(s)	342, 619
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	6 cut(s)	80, 264, 461, 546, 860, 1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.