Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012181

Physical Location & Seq

Genomic Coordinates Forward (+)

9160294 .. 9164211

Gene Structure 3918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAATGGAAGTGGAAGCCCGACGGGTGTGAACTGCCCGTTTTCAACCCGGCTCAGTTCCTTGAATTGCTCCGAGGGAAATCACTGGCCTTCGTTGGAGATTCTGTGGGTAGAAATCAAATGCAGTCACTGATATGCCTTCTTTCTATGGTGGAATATCCGATAGATGTTTCATACACAAAGGATGAGAAATACAAACGCTGGAAATACACATCCTACAACTTCACCATGGCCTCATTTTGGACGCCATATTTGATCAAATCCAAAGAAGAAGACAGTCATGGTCCAACCAACACTGGTATTTTCGGTCTCTACCTCGACGAACTCGATGAGGCATGGACAAGCCAAGTTGAGGACTTTGATTACCTCATTATTTCCGGAGGGCATTGGTTCACGCTATCCATGGTGTTCCATGAAAATAACAAAATCTCAGGTTGTCACTATTGCCTCCTGGACAATGTGCCTGATTTGGGAATGTTCTACGGCTACAGAAGGGCGTTTAGGACAGCTTTTAAGGCCATCAACAGCTTGAAAAATTACAAGGGTATAACTTACCTTAGGACTTTTGCACCATCACATTTTGAGAATGGGATGTGGAACAAAGGAGGGAATTGTGTGACTGCTGAGAAGGAAGGGAGAAAGAAGGGGTTAAAATATAGGTTATTGGACACAACACAAGCCATGTTACTAAGGCCAGATGGTCATCCTAGTAGATATGGGCATTGGCCAGAGGAAAATGTGACTTTGTATAATGACTGTGTGCATTGGTGCTTGCCAGGACCTATTGATACTTGGGGTGATTTCTTGCTTGAGATGTTGAAGATGGAGGATATCAGATCAGCTGAGGACAAGCGCTATTCAAGAGATAGAAGAATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

293

Amino Acids

34.3

Weight (kDa)

7.1

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	12 - 209	2.2e-59	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	211 - 272	5.2e-23	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15900 AT5G15900
fragaria_vesca	FvH4_6g45640
malus_domestica	MD09G1081000.v1.1 MD17G1072200.v1.1
prunus_persica	Prupe.3G242500_v2.0.a1
pyrus_communis	pycom09g00740 pycom17g07170
rosa_chinensis	RchiOBHm_Chr2g0163781
rosa_laevigata	RLG00000021416
rosa_multiflora	Rmu_sc0001181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087030 Rroxscaffold_2G00087050
rosa_rugosa	Rorug02G0504600
rosa_samantha	Rh2AG572500 Rh2BG583100 Rh2CG554000 Rh2DG592800
rosa_wichuraiana	Rw2G047320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	725
AcyI	GRCGYC	1 cut(s)	245
AfeI	AGCGCT	1 cut(s)	854
AfiI	CCNNNNNNNGG	3 cut(s)	240, 352, 470
AgsI	TTSAA	5 cut(s)	46, 65, 532, 820, 861
AjnI	CCWGG	2 cut(s)	450, 775
AluBI	AGCT	3 cut(s)	509, 528, 842
AluI	AGCT	3 cut(s)	509, 528, 842
Alw26I	GTCTC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	377
Aor51HI	AGCGCT	1 cut(s)	854
AoxI	GGCC	5 cut(s)	87, 231, 516, 692, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AspLEI	GCGC	1 cut(s)	855
AspS9I	GGNCC	2 cut(s)	284, 779
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	217, 809
AvaII	GGWCC	2 cut(s)	284, 779
AxyI	CCTNAGG	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	843
BccI	CCATC	4 cut(s)	527, 580, 692, 817
BceAI	ACGGC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	452, 777
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	1 cut(s)	487
BfoI	RGCGCY	1 cut(s)	856
Bme1390I	CCNGG	3 cut(s)	50, 452, 777
Bme18I	GGWCC	2 cut(s)	284, 779
BmgT120I	GGNCC	2 cut(s)	284, 779
BmrFI	CCNGG	3 cut(s)	50, 452, 777
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	73, 228, 402
BsaWI	WCCGGW	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 352, 470
Bse1I	ACTGG	2 cut(s)	90, 301
Bse21I	CCTNAGG	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	452, 777
BseDI	CCNNGG	3 cut(s)	73, 228, 402
BseGI	GGATG	4 cut(s)	190, 212, 597, 703
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	3 cut(s)	240, 352, 470
BseMII	CTCAG	4 cut(s)	68, 444, 615, 834
BseNI	ACTGG	2 cut(s)	90, 301
BshFI	GGCC	5 cut(s)	89, 233, 518, 694, 727
BsiSI	CCGG	2 cut(s)	50, 378
BslI	CCNNNNNNNGG	3 cut(s)	240, 352, 470
BsmAI	GTCTC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	879
BsnI	GGCC	5 cut(s)	89, 233, 518, 694, 727
Bso31I	GGTCTC	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	2 cut(s)	255, 836
Bsp19I	CCATGG	2 cut(s)	228, 402
BspANI	GGCC	5 cut(s)	89, 233, 518, 694, 727
BspCNI	CTCAG	4 cut(s)	67, 443, 616, 835
BspEI	TCCGGA	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	90, 301
BssECI	CCNNGG	3 cut(s)	73, 228, 402
BssMI	GATC	2 cut(s)	255, 836
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	2 cut(s)	228, 402
Bst2UI	CCWGG	2 cut(s)	452, 777
Bst4CI	ACNGT	2 cut(s)	278, 758
BstACI	GRCGYC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	773
BstDEI	CTNAG	6 cut(s)	54, 430, 557, 624, 689, 843
BstDSI	CCRYGG	2 cut(s)	228, 402
BstF5I	GGATG	4 cut(s)	190, 212, 597, 703
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	855
BstKTI	GATC	2 cut(s)	258, 839
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	255, 836
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	2 cut(s)	452, 777
BstSCI	CCNGG	3 cut(s)	48, 450, 775
BstSFI	CTRYAG	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	557
BsuRI	GGCC	5 cut(s)	89, 233, 518, 694, 727
BtgI	CCRYGG	2 cut(s)	228, 402
BtsCI	GGATG	4 cut(s)	190, 212, 597, 703
BtsIMutI	CAGTG	3 cut(s)	83, 128, 294
Cac8I	GCNNGC	1 cut(s)	773
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	855
Cfr13I	GGNCC	2 cut(s)	284, 779
CseI	GACGC	1 cut(s)	253
CviAII	CATG	6 cut(s)	229, 281, 336, 403, 413, 682
DdeI	CTNAG	6 cut(s)	54, 430, 557, 624, 689, 843
DpnI	GATC	2 cut(s)	257, 838
DpnII	GATC	2 cut(s)	255, 836
EaeI	YGGCCR	1 cut(s)	725
Eco130I	CCWWGG	2 cut(s)	228, 402
Eco31I	GGTCTC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	284, 779
Eco47III	AGCGCT	1 cut(s)	854
Eco81I	CCTNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	450, 775
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	2 cut(s)	228, 402
EcoT22I	ATGCAT	1 cut(s)	879
ErhI	CCWWGG	2 cut(s)	228, 402
FaeI	CATG	6 cut(s)	232, 284, 339, 406, 416, 685
FatI	CATG	6 cut(s)	228, 280, 335, 402, 412, 681
FbaI	TGATCA	1 cut(s)	255
FokI	GGATG	4 cut(s)	197, 199, 604, 690
FspBI	CTAG	1 cut(s)	708
GlaI	GCGC	1 cut(s)	854
HaeII	RGCGCY	1 cut(s)	856
HaeIII	GGCC	5 cut(s)	89, 233, 518, 694, 727
HapII	CCGG	2 cut(s)	50, 378
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	855
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	6 cut(s)	232, 284, 339, 406, 416, 685
Hin6I	GCGC	1 cut(s)	853
HinP1I	GCGC	1 cut(s)	853
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	2 cut(s)	50, 378
HphI	GGTGA	2 cut(s)	217, 809
Hpy166II	GTNNAC	2 cut(s)	32, 393
Hpy188I	TCNGA	3 cut(s)	74, 162, 836
Hpy188III	TCNNGA	2 cut(s)	378, 861
Hpy8I	GTNNAC	2 cut(s)	32, 393
Hpy99I	CGWCG	2 cut(s)	26, 323
HpyAV	CCTTC	6 cut(s)	100, 149, 486, 622, 626, 637
HpyCH4III	ACNGT	2 cut(s)	278, 758
HpyCH4V	TGCA	4 cut(s)	124, 569, 763, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	6 cut(s)	54, 430, 557, 624, 689, 843
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	6 cut(s)	232, 284, 339, 406, 416, 685
HspAI	GCGC	1 cut(s)	853
Kpn2I	TCCGGA	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	255, 836
LmnI	GCTCC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	708
MaeIII	GTNAC	5 cut(s)	126, 437, 616, 684, 739
MalI	GATC	2 cut(s)	257, 838
MboI	GATC	2 cut(s)	255, 836
MboII	GAAGA	4 cut(s)	281, 284, 832, 882
MlsI	TGGCCA	1 cut(s)	727
MluCI	AATT	3 cut(s)	65, 535, 610
MluNI	TGGCCA	1 cut(s)	727
MmeI	TCCRAC	2 cut(s)	76, 311
Mox20I	TGGCCA	1 cut(s)	727
Mph1103I	ATGCAT	1 cut(s)	879
MroI	TCCGGA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	727
MseI	TTAA	2 cut(s)	513, 650
MslI	CAYNNNNRTG	1 cut(s)	133
Msp20I	TGGCCA	1 cut(s)	727
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	2 cut(s)	50, 378
MspR9I	CCNGG	3 cut(s)	50, 452, 777
Mva1269I	GAATGC	1 cut(s)	879
MvaI	CCWGG	2 cut(s)	452, 777
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	50
NcoI	CCATGG	2 cut(s)	228, 402
NdeII	GATC	2 cut(s)	255, 836
NlaIII	CATG	6 cut(s)	232, 284, 339, 406, 416, 685
NmuCI	GTSAC	4 cut(s)	126, 437, 616, 739
NsiI	ATGCAT	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	1 cut(s)	879
PfeI	GAWTC	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	450, 775
PspGI	CCWGG	2 cut(s)	450, 775
PspPI	GGNCC	2 cut(s)	284, 779
PspPPI	RGGWCCY	1 cut(s)	779
PstNI	CAGNNNCTG	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	842
RseI	CAYNNNNRTG	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	513, 650
Sau3AI	GATC	2 cut(s)	255, 836
Sau96I	GGNCC	2 cut(s)	284, 779
ScrFI	CCNGG	3 cut(s)	50, 452, 777
SetI	ASST	9 cut(s)	318, 369, 436, 511, 530, 558, 662, 784, 844
SfcI	CTRYAG	1 cut(s)	487
SinI	GGWCC	2 cut(s)	284, 779
SmiMI	CAYNNNNRTG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	3 cut(s)	65, 535, 610
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	48, 450, 775
StyI	CCWWGG	2 cut(s)	228, 402
TaaI	ACNGT	2 cut(s)	278, 758
TaqI	TCGA	2 cut(s)	318, 327
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	65, 535, 610
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	513, 650
Tru9I	TTAA	2 cut(s)	513, 650
TscAI	CASTG	3 cut(s)	90, 135, 301
TseFI	GTSAC	4 cut(s)	126, 437, 616, 739
Tsp45I	GTSAC	4 cut(s)	126, 437, 616, 739
TspDTI	ATGAA	3 cut(s)	17, 162, 429
TspRI	CASTG	3 cut(s)	90, 135, 301
VpaK11BI	GGWCC	2 cut(s)	284, 779
XspI	CTAG	1 cut(s)	708
Zsp2I	ATGCAT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.