Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001181.1

Orthogroup ID

OG0012181

Physical Location & Seq

Genomic Coordinates Reverse (-)

3698 .. 4435

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001181.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcctcattttggacgccacatttgatcaaatccaaagaagaagacagtcatggtccaaccaacactggtattttcggtctctaccttgacgaactcgatgaggcatggacaagccaagttgaggactttgattacctcattatttccggagggcattggttcatgcgatccatggtgttccatgaaaataacaaaatctcaggttgtcactattgcctcctagacaatgtgcctgacttgggaatgttctacggctacagaaaggcgtttaggacagcttttaaggccatcaacagcttgaaaaattacaagggtataacgtaccttaggacttttgcaccatcacattttgagaatgggatgtggaacaaaggagggaattgtgtgagaacgaagccgtttaggagcaatgagacccaattggagggtgccagtttggagttttacatgattcaattagaggagtttaggactgctgagaaggaagggagaaagaaggggttaaaatataggttattggacacaacacaagccacgttactaaggccagatggtcatcctagtagatatgggcattggccagaggaaaatgtgactttgtataatgactgtgtgcattggtgcttgccaggacctattgatacttggggtgatttcttgcttgagatgttgaagatggagggtatcagatcagctgaggagaagcgctattcaagagatagaagaatgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

245

Amino Acids

28.68

Weight (kDa)

6.56

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15900 AT5G15900
fragaria_vesca	FvH4_6g45640
malus_domestica	MD09G1081000.v1.1 MD17G1072200.v1.1
prunus_persica	Prupe.3G242500_v2.0.a1
pyrus_communis	pycom09g00740 pycom17g07170
rosa_chinensis	RchiOBHm_Chr2g0163781
rosa_laevigata	RLG00000021416
rosa_multiflora	Rmu_sc0001181.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087030 Rroxscaffold_2G00087050
rosa_rugosa	Rorug02G0504600
rosa_samantha	Rh2AG572500 Rh2BG583100 Rh2CG554000 Rh2DG592800
rosa_wichuraiana	Rw2G047320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccIII	TCCGGA	1 cut(s)	149
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	326
AfeI	AGCGCT	1 cut(s)	710
AfiI	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
AgsI	TTSAA	4 cut(s)	304, 458, 676, 717
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	3 cut(s)	281, 300, 698
AluI	AGCT	3 cut(s)	281, 300, 698
Alw26I	GTCTC	2 cut(s)	86, 410
AlwI	GGATC	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	710
AoxI	GGCC	4 cut(s)	3, 288, 548, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	2 cut(s)	56, 635
AsuHPI	GGTGA	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	56, 635
AxyI	CCTNAGG	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	699
BccI	CCATC	4 cut(s)	299, 352, 548, 673
BceAI	ACGGC	2 cut(s)	271, 385
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	86, 410
BfaI	CTAG	2 cut(s)	224, 564
BfmI	CTRYAG	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	2 cut(s)	56, 635
BmgT120I	GGNCC	2 cut(s)	56, 635
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	686
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	2 cut(s)	86, 410
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
Bse1I	ACTGG	2 cut(s)	73, 435
Bse21I	CCTNAGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	369, 559
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	3 cut(s)	216, 471, 690
BseNI	ACTGG	2 cut(s)	73, 435
BseRI	GAGGAG	2 cut(s)	479, 716
BshFI	GGCC	4 cut(s)	5, 290, 550, 583
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	4 cut(s)	12, 124, 242, 427
BsmAI	GTCTC	2 cut(s)	86, 410
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	4 cut(s)	5, 290, 550, 583
Bso31I	GGTCTC	2 cut(s)	86, 410
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	27, 170, 692
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	4 cut(s)	5, 290, 550, 583
BspCNI	CTCAG	3 cut(s)	215, 472, 691
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	86, 410
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	73, 435
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	27, 170, 692
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	2 cut(s)	50, 614
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	5 cut(s)	202, 329, 480, 545, 699
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	369, 559
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	3 cut(s)	30, 173, 695
BstMAI	GTCTC	2 cut(s)	86, 410
BstMBI	GATC	3 cut(s)	27, 170, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	5, 290, 550, 583
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	369, 559
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	1 cut(s)	711
Cfr13I	GGNCC	2 cut(s)	56, 635
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	6 cut(s)	53, 108, 166, 175, 185, 451
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	5 cut(s)	202, 329, 480, 545, 699
DpnI	GATC	3 cut(s)	29, 172, 694
DpnII	GATC	3 cut(s)	27, 170, 692
EaeI	YGGCCR	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	86, 410
Eco47I	GGWCC	2 cut(s)	56, 635
Eco47III	AGCGCT	1 cut(s)	710
Eco81I	CCTNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
FatI	CATG	6 cut(s)	52, 107, 165, 174, 184, 450
FbaI	TGATCA	1 cut(s)	27
FokI	GGATG	2 cut(s)	376, 546
FspBI	CTAG	2 cut(s)	224, 564
GlaI	GCGC	1 cut(s)	710
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	4 cut(s)	5, 290, 550, 583
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	711
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	665
Hpy188I	TCNGA	1 cut(s)	692
Hpy188III	TCNNGA	2 cut(s)	150, 717
HpyAV	CCTTC	3 cut(s)	478, 482, 493
HpyCH4III	ACNGT	2 cut(s)	50, 614
HpyCH4IV	ACGT	2 cut(s)	323, 539
HpyCH4V	TGCA	3 cut(s)	341, 619, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	5 cut(s)	202, 329, 480, 545, 699
HpySE526I	ACGT	2 cut(s)	323, 539
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
HspAI	GCGC	1 cut(s)	709
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	27, 170, 692
LmnI	GCTCC	1 cut(s)	408
LpnPI	CCDG	9 cut(s)	54, 163, 189, 249, 448, 564, 597, 618, 645
MaeI	CTAG	2 cut(s)	224, 564
MaeII	ACGT	2 cut(s)	323, 539
MaeIII	GTNAC	3 cut(s)	209, 540, 595
MalI	GATC	3 cut(s)	29, 172, 694
MboI	GATC	3 cut(s)	27, 170, 692
MboII	GAAGA	4 cut(s)	53, 56, 688, 738
MfeI	CAATTG	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	583
MluCI	AATT	4 cut(s)	307, 382, 422, 458
MluNI	TGGCCA	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	583
Mph1103I	ATGCAT	1 cut(s)	735
MroI	TCCGGA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	2 cut(s)	285, 506
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	27, 170, 692
NlaIII	CATG	6 cut(s)	56, 111, 169, 178, 188, 454
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	209, 595
NsiI	ATGCAT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	56, 635
PspPPI	RGGWCCY	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	285, 506
Sau3AI	GATC	3 cut(s)	27, 170, 692
Sau96I	GGNCC	2 cut(s)	56, 635
ScrFI	CCNGG	1 cut(s)	633
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	56, 635
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	4 cut(s)	307, 382, 422, 458
SspMI	CTAG	2 cut(s)	224, 564
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	50, 614
TaiI	ACGT	2 cut(s)	326, 542
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	4 cut(s)	307, 382, 422, 458
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	285, 506
Tru9I	TTAA	2 cut(s)	285, 506
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	209, 595
Tsp45I	GTSAC	2 cut(s)	209, 595
TspDTI	ATGAA	2 cut(s)	154, 201
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	56, 635
XspI	CTAG	2 cut(s)	224, 564
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.