MD17G1072200.v1.1

protein trichome birefringence-like 19

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
5803098 .. 5806723
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1072200.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGGAGCACCAAGCCATAGATGAGCTTCCCACTGGGAAAATATGCCCACAAAAGCCACCCAAAGATTTTGTACTGCTAGTCTCTGTCCTACTTCTTCTTACAATCGTCCAACTCTATCACCCGTCAATATTCCGCTCTTTATTTTTGTCAAAAACTATTGATTCCAACCCACAAGTGCCTTCTACATCATCGTCGTCGTCGTCAGACCATTCAAATGTTCAGGAGGATGATTTGCCTTCTATTACTAGCAACTTAAATTGTGACATATTTACCGGAGAATGGGTTCCAAATCCAGAGGCTCCCTACTACACAAACACAACATGTTGGGCAATCCATGAGCACCAAAACTGCATGAAGTATGGAAGACCAGACGCTGAGTTCATGAAGTGGAAGTGGAAACCAGATGAATGTGAGCTACCCGTTTTCAACCCGGCGCAGTTCCTCGAATTAGTTAGAGGGAAGTCCATGGCATTTGTTGGAGACTCTGTGGGTAGAAACCAAATGCAGTCCTTGATATGCCTCCTTTCAAGGGTGGAATATCCAATAGTAGTTTCAAGTACCGAAGATCAGAGATTCATACGCTGGAAGTACACATCCTACAACTTCACTTTGGCCGCATTTTGGACGCCATATTTGATCAAATCCAAGCAAGTAACATACACGGAGGGTCCAACCAAGAACGGCCTTTTTGAGCTCTACCTCGACGAATTTGATGAGGCATGGACAACCCAGATTGATGAATTCGACTACATTATACTTTCTGCAGGGCATTGGTTCTTCCGTTCGATGGTGTACTACGAAAATCAAACGATTTCTGGGTGCAACTATTGCCTCATAGACAATGTGACTGACATAGGCAAACAGTATGCATATAGAAAGGCTTTTAGGACAGCTTTTAAGGCCATCAACAGCTTAGAAAATTTTAAGGGCATAACATATGTGAGGACTTTTGCTCCATCACATTTCGAAAATGGAATGTGGAACGAAGGAGGAAATTGTTTGCGAACGAAGCCGTATAGGAGCAATGAGACACGTTTGGAGGGTATAGATTTGGAGCTTTACAAGATCCAAATTGAGGAGTACAGGAAAGGTGAAAGGGAAGGGAGAAAGAAGGGGTTGAAATACAGGCTATTGGACACAACACAAGCAATGTTATTAAGGCCAGATGGTCATCCTAGTAGATATGGGCACTGGCCAAATGCAAATGTGACTTTGTATAACGACTGTGTGCACTGGTGCTTGCCGGGACCGATCGATACATGGAGCGATTTCTTGCTGGAGATGTTGAAGATGGAAGGTATGAGATCAGCTGAGGAGAAAAAGCTCCGGATTACAAACGACACGACATTGAATTGA

Protein Analysis

452

Amino Acids

52.36

Weight (kDa)

5.77

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 86 - 138 5.9e-21 PMR5 N terminal Domain
PC-Esterase PF13839 139 - 428 3.4e-95 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012181)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 1326
AciI CCGC 2 cut(s) 133, 615
AclWI GGATC 1 cut(s) 1060
AcoI YGGCCR 2 cut(s) 612, 1193
AcsI RAATTY 3 cut(s) 707, 740, 919
AcyI GRCGYC 1 cut(s) 626
AfaI GTAC 5 cut(s) 72, 559, 590, 794, 1082
AfiI CCNNNNNNNGG 5 cut(s) 279, 529, 621, 787, 1075
AflIII ACRYGT 2 cut(s) 320, 1031
AgsI TTSAA 7 cut(s) 213, 427, 528, 555, 1120, 1288, 1351
AjuI GAANNNNNNNTTGG 2 cut(s) 535, 567
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 8 cut(s) 25, 415, 694, 893, 912, 1057, 1310, 1324
AluI AGCT 8 cut(s) 25, 415, 694, 893, 912, 1057, 1310, 1324
Alw21I GWGCWC 4 cut(s) 9, 342, 696, 1233
Alw26I GTCTC 3 cut(s) 85, 474, 1022
Alw44I GTGCAC 1 cut(s) 1229
AlwI GGATC 1 cut(s) 1060
AlwNI CAGNNNCTG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 1326
AoxI GGCC 5 cut(s) 612, 682, 900, 1160, 1193
ApaLI GTGCAC 1 cut(s) 1229
ApoI RAATTY 3 cut(s) 707, 740, 919
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 2 cut(s) 668, 1247
AsuC2I CCSGG 2 cut(s) 431, 1245
AsuHPI GGTGA 2 cut(s) 110, 1103
AsuII TTCGAA 1 cut(s) 966
AvaII GGWCC 2 cut(s) 668, 1247
BaeGI GKGCMC 2 cut(s) 1191, 1233
BalI TGGCCA 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 370
Bbv12I GWGCWC 4 cut(s) 9, 342, 696, 1233
BbvCI CCTCAGC 1 cut(s) 1311
BccI CCATC 5 cut(s) 781, 911, 964, 1160, 1285
BceAI ACGGC 2 cut(s) 697, 997
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 2 cut(s) 431, 1245
BcoDI GTCTC 3 cut(s) 85, 474, 1022
BfaI CTAG 3 cut(s) 77, 246, 1176
BfmI CTRYAG 1 cut(s) 762
BisI GCNGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 616
Bme1390I CCNGG 2 cut(s) 431, 1245
Bme18I GGWCC 2 cut(s) 668, 1247
BmgT120I GGNCC 2 cut(s) 668, 1247
BmiI GGNNCC 4 cut(s) 285, 300, 669, 1248
BmrFI CCNGG 2 cut(s) 431, 1245
BmrI ACTGGG 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 370
BpmI CTGGAG 1 cut(s) 1298
Bpu10I CCTNAGC 1 cut(s) 1311
Bpu14I TTCGAA 1 cut(s) 966
BpuMI CCSGG 2 cut(s) 431, 1245
Bsa29I ATCGAT 1 cut(s) 1254
BsaBI GATNNNNATC 1 cut(s) 1170
BsaHI GRCGYC 1 cut(s) 626
BsaJI CCNNGG 1 cut(s) 465
BsaWI WCCGGW 2 cut(s) 272, 1326
BsaXI ACNNNNNCTCC 6 cut(s) 267, 297, 471, 501, 937, 967
Bsc4I CCNNNNNNNGG 5 cut(s) 279, 529, 621, 787, 1075
Bse1I ACTGG 3 cut(s) 37, 1196, 1238
Bse3DI GCAATG 2 cut(s) 1030, 1155
Bse8I GATNNNNATC 1 cut(s) 1170
BseAI TCCGGA 1 cut(s) 1326
BseCI ATCGAT 1 cut(s) 1254
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 3 cut(s) 232, 593, 1171
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 5 cut(s) 279, 529, 621, 787, 1075
BseMI GCAATG 2 cut(s) 1030, 1155
BseMII CTCAG 2 cut(s) 366, 1302
BseNI ACTGG 3 cut(s) 37, 1196, 1238
BseRI GAGGAG 2 cut(s) 1091, 1328
BseSI GKGCMC 2 cut(s) 1191, 1233
Bsh1285I CGRYCG 1 cut(s) 1254
BshFI GGCC 5 cut(s) 614, 684, 902, 1162, 1195
BshVI ATCGAT 1 cut(s) 1254
BsiEI CGRYCG 1 cut(s) 1254
BsiHKAI GWGCWC 4 cut(s) 9, 342, 696, 1233
BsiSI CCGG 4 cut(s) 273, 431, 1244, 1327
BslFI GGGAC 1 cut(s) 1260
BslI CCNNNNNNNGG 5 cut(s) 279, 529, 621, 787, 1075
BsmAI GTCTC 3 cut(s) 85, 474, 1022
BsmFI GGGAC 1 cut(s) 1260
BsnI GGCC 5 cut(s) 614, 684, 902, 1162, 1195
Bsp119I TTCGAA 1 cut(s) 966
Bsp1286I GDGCHC 5 cut(s) 9, 342, 696, 1191, 1233
Bsp13I TCCGGA 1 cut(s) 1326
Bsp143I GATC 5 cut(s) 565, 636, 1065, 1251, 1304
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 2 cut(s) 133, 615
BspANI GGCC 5 cut(s) 614, 684, 902, 1162, 1195
BspCNI CTCAG 2 cut(s) 367, 1303
BspDI ATCGAT 1 cut(s) 1254
BspEI TCCGGA 1 cut(s) 1326
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 4 cut(s) 285, 300, 669, 1248
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 1 cut(s) 1060
BspT104I TTCGAA 1 cut(s) 966
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 2 cut(s) 1030, 1155
BsrI ACTGG 3 cut(s) 37, 1196, 1238
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 5 cut(s) 565, 636, 1065, 1251, 1304
BssNI GRCGYC 1 cut(s) 626
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 864, 1226
BstACI GRCGYC 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 828
BstBI TTCGAA 1 cut(s) 966
BstC8I GCNNGC 1 cut(s) 1241
BstDEI CTNAG 3 cut(s) 375, 913, 1311
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 3 cut(s) 232, 593, 1171
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 5 cut(s) 568, 639, 1068, 1254, 1307
BstMAI GTCTC 3 cut(s) 85, 474, 1022
BstMBI GATC 5 cut(s) 565, 636, 1065, 1251, 1304
BstMCI CGRYCG 1 cut(s) 1254
BstMWI GCNNNNNNNGC 3 cut(s) 828, 899, 1009
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 2 cut(s) 429, 1243
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 2 cut(s) 1191, 1233
BstV2I GAAGAC 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 1065
BstYI RGATCY 1 cut(s) 1065
Bsu15I ATCGAT 1 cut(s) 1254
BsuRI GGCC 5 cut(s) 614, 684, 902, 1162, 1195
BsuTUI ATCGAT 1 cut(s) 1254
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 3 cut(s) 232, 593, 1171
BtsIMutI CAGTG 3 cut(s) 30, 1189, 1231
Cac8I GCNNGC 1 cut(s) 1241
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 381
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 668, 1247
ClaI ATCGAT 1 cut(s) 1254
CseI GACGC 2 cut(s) 380, 634
Csp6I GTAC 5 cut(s) 71, 558, 589, 793, 1081
CviAII CATG 7 cut(s) 321, 335, 352, 382, 466, 720, 1260
CviQI GTAC 5 cut(s) 71, 558, 589, 793, 1081
DdeI CTNAG 3 cut(s) 375, 913, 1311
DpnI GATC 5 cut(s) 567, 638, 1067, 1253, 1306
DpnII GATC 5 cut(s) 565, 636, 1065, 1251, 1304
EaeI YGGCCR 2 cut(s) 612, 1193
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 668, 1247
Eco53kI GAGCTC 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 740
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 871
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 7 cut(s) 324, 338, 355, 385, 469, 723, 1263
FaqI GGGAC 1 cut(s) 1260
FatI CATG 7 cut(s) 320, 334, 351, 381, 465, 719, 1259
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 3 cut(s) 239, 580, 1158
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 3 cut(s) 77, 246, 1176
GlaI GCGC 1 cut(s) 435
GluI GCNGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 1298
HaeIII GGCC 5 cut(s) 614, 684, 902, 1162, 1195
HapII CCGG 4 cut(s) 273, 431, 1244, 1327
HgaI GACGC 2 cut(s) 380, 634
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 7 cut(s) 324, 338, 355, 385, 469, 723, 1263
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 3 cut(s) 161, 482, 573
HpaII CCGG 4 cut(s) 273, 431, 1244, 1327
HphI GGTGA 2 cut(s) 110, 1103
Hpy166II GTNNAC 3 cut(s) 591, 793, 1231
Hpy188I TCNGA 2 cut(s) 205, 570
Hpy188III TCNNGA 4 cut(s) 221, 293, 382, 1327
Hpy8I GTNNAC 3 cut(s) 591, 793, 1231
Hpy99I CGWCG 4 cut(s) 196, 199, 202, 707
HpyAV CCTTC 6 cut(s) 189, 246, 980, 1094, 1105, 1289
HpyCH4III ACNGT 2 cut(s) 864, 1226
HpyCH4IV ACGT 1 cut(s) 1033
HpyCH4V TGCA 7 cut(s) 351, 505, 764, 822, 869, 1202, 1231
HpyF10VI GCNNNNNNNGC 3 cut(s) 828, 899, 1009
HpyF3I CTNAG 3 cut(s) 375, 913, 1311
HpySE526I ACGT 1 cut(s) 1033
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 7 cut(s) 324, 338, 355, 385, 469, 723, 1263
HspAI GCGC 1 cut(s) 434
Kpn2I TCCGGA 1 cut(s) 1326
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 5 cut(s) 565, 636, 1065, 1251, 1304
LmnI GCTCC 7 cut(s) 4, 304, 958, 1020, 1054, 1263, 1329
MaeI CTAG 3 cut(s) 77, 246, 1176
MaeII ACGT 1 cut(s) 1033
MaeIII GTNAC 4 cut(s) 260, 652, 844, 1207
MalI GATC 5 cut(s) 567, 638, 1067, 1253, 1306
MbiI CCGCTC 1 cut(s) 135
MboI GATC 5 cut(s) 565, 636, 1065, 1251, 1304
MboII GAAGA 5 cut(s) 86, 375, 575, 769, 1300
MflI RGATCY 1 cut(s) 1065
MhlI GDGCHC 5 cut(s) 9, 342, 696, 1191, 1233
MlsI TGGCCA 1 cut(s) 1195
MluCI AATT 8 cut(s) 256, 446, 707, 740, 919, 994, 1071, 1351
MluNI TGGCCA 1 cut(s) 1195
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 4 cut(s) 133, 189, 457, 695
Mox20I TGGCCA 1 cut(s) 1195
Mph1103I ATGCAT 1 cut(s) 871
MroI TCCGGA 1 cut(s) 1326
MroXI GAANNNNTTC 1 cut(s) 282
MscI TGGCCA 1 cut(s) 1195
MseI TTAA 4 cut(s) 254, 897, 924, 1157
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 1195
MspA1I CMGCKG 1 cut(s) 1310
MspI CCGG 4 cut(s) 273, 431, 1244, 1327
MspR9I CCNGG 2 cut(s) 431, 1245
MwoI GCNNNNNNNGC 3 cut(s) 828, 899, 1009
NciI CCSGG 2 cut(s) 431, 1245
NcoI CCATGG 1 cut(s) 465
NdeI CATATG 1 cut(s) 937
NdeII GATC 5 cut(s) 565, 636, 1065, 1251, 1304
NlaIII CATG 7 cut(s) 324, 338, 355, 385, 469, 723, 1263
NlaIV GGNNCC 4 cut(s) 285, 300, 669, 1248
NmuCI GTSAC 3 cut(s) 260, 844, 1207
NsiI ATGCAT 1 cut(s) 871
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 966
PagI TCATGA 1 cut(s) 381
PciI ACATGT 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 161, 573
PkrI GCNGC 1 cut(s) 616
Ple19I CGATCG 1 cut(s) 1254
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PscI ACATGT 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 696
PspN4I GGNNCC 4 cut(s) 285, 300, 669, 1248
PspPI GGNCC 2 cut(s) 668, 1247
PstI CTGCAG 1 cut(s) 766
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 1 cut(s) 1065
PvuI CGATCG 1 cut(s) 1254
PvuII CAGCTG 1 cut(s) 1310
RsaI GTAC 5 cut(s) 72, 559, 590, 794, 1082
RsaNI GTAC 5 cut(s) 71, 558, 589, 793, 1081
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 696
SaqAI TTAA 4 cut(s) 254, 897, 924, 1157
SatI GCNGC 1 cut(s) 615
Sau3AI GATC 5 cut(s) 565, 636, 1065, 1251, 1304
Sau96I GGNCC 2 cut(s) 668, 1247
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 2 cut(s) 431, 1245
SduI GDGCHC 5 cut(s) 9, 342, 696, 1191, 1233
SfcI CTRYAG 1 cut(s) 762
SfuI TTCGAA 1 cut(s) 966
SinI GGWCC 2 cut(s) 668, 1247
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 8 cut(s) 256, 446, 707, 740, 919, 994, 1071, 1351
SsiI CCGC 2 cut(s) 133, 615
SspI AATATT 1 cut(s) 129
SspMI CTAG 3 cut(s) 77, 246, 1176
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 429, 1243
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 864, 1226
TaiI ACGT 1 cut(s) 1036
TaqI TCGA 6 cut(s) 444, 702, 744, 785, 966, 1254
TaqII GACCGA 1 cut(s) 1264
TasI AATT 8 cut(s) 256, 446, 707, 740, 919, 994, 1071, 1351
TatI WGTACW 4 cut(s) 70, 588, 792, 1080
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 2 cut(s) 161, 573
Tru1I TTAA 4 cut(s) 254, 897, 924, 1157
Tru9I TTAA 4 cut(s) 254, 897, 924, 1157
TscAI CASTG 3 cut(s) 37, 1196, 1238
TseFI GTSAC 3 cut(s) 260, 844, 1207
Tsp45I GTSAC 3 cut(s) 260, 844, 1207
TspDTI ATGAA 6 cut(s) 368, 370, 398, 420, 565, 753
TspGWI ACGGA 2 cut(s) 677, 770
TspRI CASTG 3 cut(s) 37, 1196, 1238
VneI GTGCAC 1 cut(s) 1229
VpaK11BI GGWCC 2 cut(s) 668, 1247
XapI RAATTY 3 cut(s) 707, 740, 919
XceI RCATGY 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 77, 246, 1176
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.