Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007170

Physical Location & Seq

Genomic Coordinates Forward (+)

5199711 .. 5202452

Gene Structure 2742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGAGAAAAAGAACAAAGGACAGTGAACCAGGACCAGTCCCTCTGCTTGTACCGGTTGATAGATTTGGGTTTCTGAAACAGGAACATGGCAGTTCTCCTCAACGTTTCACCAAGACTAAATCATCTATTAATTATGAGAAGGAGGAGAAGAGAGTGACAAAATGGAGGAAGATGATTGGAACTGGGGGTAGTGATTGGAAGCATTACGTTAGGAGAAAACCTCATGTTGTCAAGAGGCGGATTCGAAAAGGGATCCCTGATTGCTTAAGGGGTCTCGTTTGGCAATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGTTTATGTGCAACTGGTGATTTATGAGACGTCGGCATCAGAACTCGATATCATTCGGGATATATCTCGTACTTTCCCGTCACATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATCATTATACAATGTTCTAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGGGAATGGGTTTCATAGCCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTGGTTATTAGTTGCATTACTCAAAGGAGCTGTCCACTCCCCAATAGAAGGATTGTATCAGGCAGGGCTTCCTCTTGTACAGCAATATCTGTTACAGTTTGATCAGTTGGTAAGAGAGCTAATGCCCAAACTAGGAGAACATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGTCAATGGTTCATAACCGTCTTTTCGTATTCACTTCCTTTCCATTCAGCGCTACGAATTTGGGATGTGTTTCTAGCTGAGGGTGTTAAAATCGTGTTCAAAGTCGGTTTAGCATTATTGAAGCATTGCCATGATGATTTGTTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGAATTTCCCTGAAGATGCCATGGATCCTGATACTTTGCTTCCATTGGCTTATTCCATTAAGGTATCAAAGCGTTTGGAAGAAATGAAACAGGATTGTGACAAGGCCGTTGCTAAACCGACTCAAACGGCCAAATCGGTTCGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

356

Amino Acids

41.03

Weight (kDa)

9.37

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	88 - 296	8.4e-60	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	150 - 308	9.3e-46	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02460 AT3G02460 AT3G02460 AT3G02460 AT5G15930
fragaria_vesca	FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750
malus_domestica	MD09G1080000.v1.1 MD17G1070500.v1.1
prunus_persica	Prupe.3G243700_v2.0.a1
pyrus_communis	pycom09g00670 pycom17g07040
rosa_chinensis	RchiOBHm_Chr2g0163941
rosa_laevigata	RLG00000021427
rosa_multiflora	Rmu_sc0006491.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086910
rosa_rugosa	Rorug02G0505100
rosa_samantha	Rh2AG573700 Rh2BG584400 Rh2CG555300 Rh2DG593800
rosa_wichuraiana	Rw2G047440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	494
AatII	GACGTC	1 cut(s)	362
AciI	CCGC	1 cut(s)	241
AclI	AACGTT	1 cut(s)	106
AclWI	GGATC	4 cut(s)	250, 263, 941, 954
AcoI	YGGCCR	1 cut(s)	1050
AcsI	RAATTY	2 cut(s)	801, 925
AcuI	CTGAAG	1 cut(s)	954
AcyI	GRCGYC	1 cut(s)	359
AfaI	GTAC	3 cut(s)	54, 400, 645
AfeI	AGCGCT	1 cut(s)	795
AfiI	CCNNNNNNNGG	2 cut(s)	614, 698
AflII	CTTAAG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	412
AgeI	ACCGGT	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	844, 865, 889
AjnI	CCWGG	2 cut(s)	31, 439
AluBI	AGCT	3 cut(s)	596, 685, 821
AluI	AGCT	3 cut(s)	596, 685, 821
Alw26I	GTCTC	4 cut(s)	281, 300, 350, 424
AlwI	GGATC	4 cut(s)	250, 263, 941, 954
Aor51HI	AGCGCT	1 cut(s)	795
AoxI	GGCC	3 cut(s)	442, 1026, 1050
ApoI	RAATTY	2 cut(s)	801, 925
ArsI	GACNNNNNNTTYG	2 cut(s)	582, 614
AseI	ATTAAT	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	2 cut(s)	35, 437
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	103, 358
AsuII	TTCGAA	1 cut(s)	247
AvaII	GGWCC	2 cut(s)	35, 437
BamHI	GGATCC	2 cut(s)	255, 946
BbvCI	CCTCAGC	1 cut(s)	822
BceAI	ACGGC	2 cut(s)	1013, 1065
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	2 cut(s)	33, 441
BclI	TGATCA	2 cut(s)	667, 723
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	4 cut(s)	281, 300, 350, 424
BfaI	CTAG	2 cut(s)	698, 818
BfoI	RGCGCY	1 cut(s)	797
BfrI	CTTAAG	1 cut(s)	268
Bme1390I	CCNGG	3 cut(s)	33, 327, 441
Bme18I	GGWCC	2 cut(s)	35, 437
BmgT120I	GGNCC	2 cut(s)	35, 437
BmiI	GGNNCC	2 cut(s)	257, 948
BmrFI	CCNGG	3 cut(s)	33, 327, 441
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	374, 550, 928
BmuI	ACTGGG	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
Bpu10I	CCTNAGC	1 cut(s)	822
Bpu14I	TTCGAA	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	359
BsaI	GGTCTC	2 cut(s)	281, 300
BsaJI	CCNNGG	1 cut(s)	942
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 698
Bse118I	RCCGGY	2 cut(s)	55, 527
Bse1I	ACTGG	3 cut(s)	38, 190, 348
Bse3DI	GCAATG	1 cut(s)	868
BseBI	CCWGG	2 cut(s)	33, 441
BseDI	CCNNGG	1 cut(s)	942
BseGI	GGATG	1 cut(s)	814
BseLI	CCNNNNNNNGG	2 cut(s)	614, 698
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	2 cut(s)	813, 911
BseNI	ACTGG	3 cut(s)	38, 190, 348
BseRI	GAGGAG	2 cut(s)	90, 161
BshFI	GGCC	3 cut(s)	444, 1028, 1052
BshTI	ACCGGT	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	56, 327, 528
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	614, 698
BsmAI	GTCTC	4 cut(s)	281, 300, 350, 424
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	444, 1028, 1052
Bso31I	GGTCTC	2 cut(s)	281, 300
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	3 cut(s)	444, 1028, 1052
BspCNI	CTCAG	2 cut(s)	814, 912
BspLI	GGNNCC	2 cut(s)	257, 948
BspPI	GGATC	4 cut(s)	250, 263, 941, 954
BspT104I	TTCGAA	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	268
BspTNI	GGTCTC	2 cut(s)	281, 300
BsrDI	GCAATG	1 cut(s)	868
BsrFI	RCCGGY	2 cut(s)	55, 527
BsrGI	TGTACA	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	38, 190, 348
BssAI	RCCGGY	2 cut(s)	55, 527
BssECI	CCNNGG	1 cut(s)	942
BssMI	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
BssNI	GRCGYC	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	942
Bst2UI	CCWGG	2 cut(s)	33, 441
Bst4CI	ACNGT	3 cut(s)	26, 663, 763
Bst6I	CTCTTC	2 cut(s)	146, 422
BstACI	GRCGYC	1 cut(s)	359
BstAFI	CTTAAG	1 cut(s)	268
BstAUI	TGTACA	1 cut(s)	643
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	2 cut(s)	822, 920
BstDSI	CCRYGG	1 cut(s)	942
BstF5I	GGATG	1 cut(s)	814
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	6 cut(s)	258, 294, 452, 670, 726, 949
BstMAI	GTCTC	4 cut(s)	281, 300, 350, 424
BstMBI	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
BstNI	CCWGG	2 cut(s)	33, 441
BstNSI	RCATGY	2 cut(s)	416, 917
BstSCI	CCNGG	3 cut(s)	31, 325, 439
BstX2I	RGATCY	2 cut(s)	255, 946
BstYI	RGATCY	2 cut(s)	255, 946
BsuRI	GGCC	3 cut(s)	444, 1028, 1052
BtgI	CCRYGG	1 cut(s)	942
BtsCI	GGATG	1 cut(s)	814
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	915
CfoI	GCGC	1 cut(s)	796
Cfr10I	RCCGGY	2 cut(s)	55, 527
Cfr13I	GGNCC	2 cut(s)	35, 437
Csp6I	GTAC	3 cut(s)	53, 399, 644
CspAI	ACCGGT	1 cut(s)	55
CviAII	CATG	8 cut(s)	89, 227, 413, 434, 875, 910, 914, 943
CviJI	RGCY	9 cut(s)	444, 527, 596, 634, 685, 821, 971, 1028, 1052
CviKI_1	RGCY	9 cut(s)	444, 527, 596, 634, 685, 821, 971, 1028, 1052
CviQI	GTAC	3 cut(s)	53, 399, 644
DdeI	CTNAG	2 cut(s)	822, 920
DpnI	GATC	6 cut(s)	257, 293, 451, 669, 725, 948
DpnII	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
EaeI	YGGCCR	1 cut(s)	1050
Eam1104I	CTCTTC	2 cut(s)	146, 422
EarI	CTCTTC	2 cut(s)	146, 422
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	942
Eco31I	GGTCTC	2 cut(s)	281, 300
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	35, 437
Eco47III	AGCGCT	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	954
EcoRII	CCWGG	2 cut(s)	31, 439
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	942
EcoT22I	ATGCAT	2 cut(s)	565, 915
ErhI	CCWWGG	1 cut(s)	942
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	8 cut(s)	92, 230, 416, 437, 878, 913, 917, 946
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	8 cut(s)	88, 226, 412, 433, 874, 909, 913, 942
FbaI	TGATCA	2 cut(s)	667, 723
FokI	GGATG	1 cut(s)	821
FspBI	CTAG	2 cut(s)	698, 818
GlaI	GCGC	1 cut(s)	795
HaeII	RGCGCY	1 cut(s)	797
HaeIII	GGCC	3 cut(s)	444, 1028, 1052
HapII	CCGG	3 cut(s)	56, 327, 528
HhaI	GCGC	1 cut(s)	796
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	8 cut(s)	92, 230, 416, 437, 878, 913, 917, 946
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	3 cut(s)	244, 322, 1042
HpaII	CCGG	3 cut(s)	56, 327, 528
HphI	GGTGA	2 cut(s)	103, 358
Hpy166II	GTNNAC	2 cut(s)	29, 601
Hpy188I	TCNGA	5 cut(s)	78, 370, 500, 732, 921
Hpy188III	TCNNGA	7 cut(s)	235, 297, 305, 386, 424, 716, 950
Hpy8I	GTNNAC	2 cut(s)	29, 601
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	136, 608
HpyCH4III	ACNGT	3 cut(s)	26, 663, 763
HpyCH4IV	ACGT	3 cut(s)	106, 210, 359
HpyCH4V	TGCA	5 cut(s)	340, 563, 581, 743, 913
HpyF3I	CTNAG	2 cut(s)	822, 920
HpySE526I	ACGT	3 cut(s)	106, 210, 359
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	8 cut(s)	92, 230, 416, 437, 878, 913, 917, 946
HspAI	GCGC	1 cut(s)	794
Ksp22I	TGATCA	2 cut(s)	667, 723
Kzo9I	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
LmnI	GCTCC	1 cut(s)	593
LweI	GCATC	3 cut(s)	374, 550, 928
MaeI	CTAG	2 cut(s)	698, 818
MaeII	ACGT	3 cut(s)	106, 210, 359
MaeIII	GTNAC	4 cut(s)	157, 408, 657, 1019
MalI	GATC	6 cut(s)	257, 293, 451, 669, 725, 948
MboI	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
MboII	GAAGA	8 cut(s)	163, 184, 412, 439, 566, 569, 947, 1013
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	2 cut(s)	255, 946
MluCI	AATT	5 cut(s)	133, 287, 801, 890, 925
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	1 cut(s)	478
Mph1103I	ATGCAT	2 cut(s)	565, 915
MseI	TTAA	4 cut(s)	132, 269, 831, 981
MslI	CAYNNNNRTG	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	268
MspI	CCGG	3 cut(s)	56, 327, 528
MspR9I	CCNGG	3 cut(s)	33, 327, 441
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	2 cut(s)	33, 441
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	942
NdeII	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
NlaIII	CATG	8 cut(s)	92, 230, 416, 437, 878, 913, 917, 946
NlaIV	GGNNCC	2 cut(s)	257, 948
NmuCI	GTSAC	3 cut(s)	157, 408, 1019
NsiI	ATGCAT	2 cut(s)	565, 915
NspI	RCATGY	2 cut(s)	416, 917
NspV	TTCGAA	1 cut(s)	247
PaeI	GCATGC	1 cut(s)	917
PciI	ACATGT	1 cut(s)	412
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	2 cut(s)	244, 322
PinAI	ACCGGT	1 cut(s)	55
PleI	GAGTC	1 cut(s)	1036
PpsI	GAGTC	1 cut(s)	1036
PscI	ACATGT	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	132
Psp1406I	AACGTT	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	31, 439
PspGI	CCWGG	2 cut(s)	31, 439
PspN4I	GGNNCC	2 cut(s)	257, 948
PspPI	GGNCC	2 cut(s)	35, 437
PsuI	RGATCY	2 cut(s)	255, 946
RsaI	GTAC	3 cut(s)	54, 400, 645
RsaNI	GTAC	3 cut(s)	53, 399, 644
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	132, 269, 831, 981
Sau3AI	GATC	6 cut(s)	255, 291, 449, 667, 723, 946
Sau96I	GGNCC	2 cut(s)	35, 437
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	3 cut(s)	33, 327, 441
SetI	ASST	9 cut(s)	109, 213, 226, 312, 362, 598, 687, 823, 987
SfaNI	GCATC	3 cut(s)	374, 550, 928
SfuI	TTCGAA	1 cut(s)	247
SinI	GGWCC	2 cut(s)	35, 437
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	2 cut(s)	268, 714
SmoI	CTYRAG	2 cut(s)	268, 714
SphI	GCATGC	1 cut(s)	917
Sse9I	AATT	5 cut(s)	133, 287, 801, 890, 925
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	2 cut(s)	698, 818
StyD4I	CCNGG	3 cut(s)	31, 325, 439
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	3 cut(s)	26, 663, 763
TaiI	ACGT	3 cut(s)	109, 213, 362
TaqI	TCGA	4 cut(s)	247, 304, 375, 1063
TasI	AATT	5 cut(s)	133, 287, 801, 890, 925
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	2 cut(s)	244, 322
Tru1I	TTAA	4 cut(s)	132, 269, 831, 981
Tru9I	TTAA	4 cut(s)	132, 269, 831, 981
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	3 cut(s)	157, 408, 1019
Tsp45I	GTSAC	3 cut(s)	157, 408, 1019
TspDTI	ATGAA	4 cut(s)	335, 511, 745, 1022
TspRI	CASTG	1 cut(s)	31
Vha464I	CTTAAG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	35, 437
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	2 cut(s)	801, 925
XceI	RCATGY	2 cut(s)	416, 917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XspI	CTAG	2 cut(s)	698, 818
ZraI	GACGTC	1 cut(s)	360
Zsp2I	ATGCAT	2 cut(s)	565, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.