Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007170

Physical Location & Seq

Genomic Coordinates Reverse (-)

5691079 .. 5695943

Gene Structure 4865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1070500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAAAGAAACCAGAAGAAGATGATGACCATGAGCCAGGTCCAGTTCCTCCACTGAGATTGGACAGATTTGGCTTCTTAAAGCCAGAAATTTCACCTGAAGGTTTAACCAAGAGCAGGTCAGCCTTTGAATATGATAGAGAGGAAAGAAGAGTTAGAAAATGGAGGAAGATGATTGGGGTGGGAGGGAGTGATTGGAAACATTATATTAGGAGAAAACCTCACGTTGTTAAAAGGAGAATAAGGAAAGGAATTCCTGATTGTTTAAGAGGTCTCGTTTGGCAGTTGATCTCTGGAAGTCGGGATCTGTTGCTGATGAACCCTGGGGTTTATGAGCAATTAGTGATTTATGAGACGTCAGCTTCAGAGCTGGATATAATTCGAGATATTTCGCGAACCTTCCCTTCACATGTTTTCTTCCAGCAGAGACACGGCCCTGGTCAAAGGTCCCTCTACAATGTTTTGAAGGCGTACTCCGTATTTGACAGAGAAGTTGGATATGTTCAGGGAATGGGATTTCTGGCTGGCCTGTTACTTCTTTATATGAGTGAAGAGGATGCATTTTGGTTATTAGTTGCATTACTAAAAGGAGCAGTTCATGCACCAATGGAAGGTTTATATCAGGTAGGGCTACCACTAGTACAACAATACCTTTTTCAGTTTGACCAGTTAGTAAAGGAGCACTTGCCAAAGCTGGGAGAGCATTTTACTCGAGAAATGATAAATCCAAGCATGTATGCAAGCCAGTGGTTCATAACCGTTTTCTCCTACTCTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTACGAGGGTGTTAGAATCGTTTTCAAAGTTGGTTTAGCCTTATTAAAGTATTGCCACGACGACTTGATAAAATTACCCTTCGAGAAACTTATTCATGCTTTGCGTAACTTCGCTGACGATGCAATGAATCCGGATACTTTGCTGCCATTGGCTTACTCAACCAAGGTATCAAGGGGTTTGGAGGAAACGAGGCAGGAGTACGAGAAGAAGAATGGAAGGGGAGGTCAGTCGCCAGAGAGTGAGAAGCAGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

358

Amino Acids

41.54

Weight (kDa)

8.31

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	87 - 295	1.1e-60	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	149 - 307	9.5e-47	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02460 AT3G02460 AT3G02460 AT3G02460 AT5G15930
fragaria_vesca	FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750
malus_domestica	MD09G1080000.v1.1 MD17G1070500.v1.1
prunus_persica	Prupe.3G243700_v2.0.a1
pyrus_communis	pycom09g00670 pycom17g07040
rosa_chinensis	RchiOBHm_Chr2g0163941
rosa_laevigata	RLG00000021427
rosa_multiflora	Rmu_sc0006491.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086910
rosa_rugosa	Rorug02G0505100
rosa_samantha	Rh2AG573700 Rh2BG584400 Rh2CG555300 Rh2DG593800
rosa_wichuraiana	Rw2G047440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	108
AccII	CGCG	1 cut(s)	394
AccIII	TCCGGA	1 cut(s)	946
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	90, 252, 798
AcuI	CTGAAG	2 cut(s)	120, 348
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	3 cut(s)	473, 642, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	117, 611, 695
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	131, 466, 841
AhlI	ACTAGT	1 cut(s)	637
AjnI	CCWGG	3 cut(s)	37, 322, 436
AluBI	AGCT	3 cut(s)	362, 370, 694
AluI	AGCT	3 cut(s)	362, 370, 694
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	3 cut(s)	278, 347, 421
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	711
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	2 cut(s)	433, 526
ApeKI	GCWGC	1 cut(s)	958
ApoI	RAATTY	3 cut(s)	90, 252, 798
AspS9I	GGNCC	3 cut(s)	41, 434, 447
AsuHPI	GGTGA	1 cut(s)	87
AsuII	TTCGAA	1 cut(s)	796
AvaI	CYCGRG	1 cut(s)	711
AvaII	GGWCC	2 cut(s)	41, 447
BaeI	ACNNNNGTAYC	2 cut(s)	966, 999
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	945
BceAI	ACGGC	1 cut(s)	448
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	3 cut(s)	39, 324, 438
BciVI	GTATCC	1 cut(s)	943
BcoDI	GTCTC	3 cut(s)	278, 347, 421
BcuI	ACTAGT	1 cut(s)	637
BfaI	CTAG	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	943
BisI	GCNGC	1 cut(s)	959
BlsI	GCNGC	1 cut(s)	960
Bme1390I	CCNGG	3 cut(s)	39, 324, 438
Bme18I	GGWCC	2 cut(s)	41, 447
BmeT110I	CYCGRG	1 cut(s)	711
BmgT120I	GGNCC	3 cut(s)	41, 434, 447
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	3 cut(s)	39, 324, 438
BmsI	GCATC	2 cut(s)	547, 925
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
Bpu14I	TTCGAA	1 cut(s)	796
BsaHI	GRCGYC	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	4 cut(s)	322, 323, 436, 978
BsaWI	WCCGGW	1 cut(s)	946
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 611, 695
Bse1I	ACTGG	3 cut(s)	44, 667, 745
Bse3DI	GCAATG	1 cut(s)	945
BseAI	TCCGGA	1 cut(s)	946
BseBI	CCWGG	3 cut(s)	39, 324, 438
BseDI	CCNNGG	4 cut(s)	322, 323, 436, 978
BseGI	GGATG	2 cut(s)	562, 811
BseLI	CCNNNNNNNGG	3 cut(s)	117, 611, 695
BseMI	GCAATG	1 cut(s)	945
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	3 cut(s)	44, 667, 745
BseXI	GCAGC	1 cut(s)	945
BseYI	CCCAGC	1 cut(s)	694
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	435, 528
BsiHKAI	GWGCWC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	947
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	117, 611, 695
BsmAI	GTCTC	3 cut(s)	278, 347, 421
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	435, 528
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	711
Bsp119I	TTCGAA	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp13I	TCCGGA	1 cut(s)	946
Bsp143I	GATC	2 cut(s)	288, 304
Bsp68I	TCGCGA	1 cut(s)	394
BspANI	GGCC	2 cut(s)	435, 528
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	946
BspFNI	CGCG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	449
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	796
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	945
BsrI	ACTGG	3 cut(s)	44, 667, 745
BssECI	CCNNGG	4 cut(s)	322, 323, 436, 978
BssMI	GATC	2 cut(s)	288, 304
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	978
Bst2UI	CCWGG	3 cut(s)	39, 324, 438
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	3 cut(s)	145, 546, 798
BstACI	GRCGYC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	796
BstC8I	GCNNGC	2 cut(s)	526, 742
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	562, 811
BstFNI	CGCG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	291, 307
BstMAI	GTCTC	3 cut(s)	278, 347, 421
BstMBI	GATC	2 cut(s)	288, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 700, 935
BstNI	CCWGG	3 cut(s)	39, 324, 438
BstNSI	RCATGY	2 cut(s)	413, 736
BstSCI	CCNGG	3 cut(s)	37, 322, 436
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	945
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	2 cut(s)	435, 528
BtsCI	GGATG	2 cut(s)	562, 811
BtsIMutI	CAGTG	2 cut(s)	53, 752
BtuMI	TCGCGA	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	526, 742
Cfr13I	GGNCC	3 cut(s)	41, 434, 447
Csp6I	GTAC	3 cut(s)	472, 641, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	5 cut(s)	32, 410, 599, 733, 911
CviQI	GTAC	3 cut(s)	472, 641, 1015
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	290, 306
DpnII	GATC	2 cut(s)	288, 304
Eam1104I	CTCTTC	3 cut(s)	145, 546, 798
EarI	CTCTTC	3 cut(s)	145, 546, 798
Eco130I	CCWWGG	1 cut(s)	978
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	41, 447
Eco57I	CTGAAG	2 cut(s)	120, 348
Eco88I	CYCGRG	1 cut(s)	711
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	37, 322, 436
EcoT14I	CCWWGG	1 cut(s)	978
EcoT22I	ATGCAT	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	978
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	5 cut(s)	35, 413, 602, 736, 914
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	5 cut(s)	31, 409, 598, 732, 910
Fnu4HI	GCNGC	1 cut(s)	959
FokI	GGATG	2 cut(s)	569, 818
Fsp4HI	GCNGC	1 cut(s)	959
FspBI	CTAG	1 cut(s)	638
GluI	GCNGC	1 cut(s)	959
GsaI	CCCAGC	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	435, 528
HapII	CCGG	1 cut(s)	947
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	5 cut(s)	35, 413, 602, 736, 914
HinfI	GANTC	2 cut(s)	831, 943
HpaII	CCGG	1 cut(s)	947
HphI	GGTGA	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	8 cut(s)	257, 294, 302, 383, 393, 713, 898, 947
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	7 cut(s)	95, 409, 414, 460, 605, 904, 1026
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4IV	ACGT	2 cut(s)	225, 356
HpyCH4V	TGCA	5 cut(s)	560, 578, 602, 740, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 700, 935
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	225, 356
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	35, 413, 602, 736, 914
Kpn2I	TCCGGA	1 cut(s)	946
Kzo9I	GATC	2 cut(s)	288, 304
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	2 cut(s)	590, 679
Lsp1109I	GCAGC	1 cut(s)	945
LweI	GCATC	2 cut(s)	547, 925
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	2 cut(s)	225, 356
MaeIII	GTNAC	2 cut(s)	531, 920
MalI	GATC	2 cut(s)	290, 306
MboI	GATC	2 cut(s)	288, 304
MboII	GAAGA	9 cut(s)	29, 32, 162, 181, 409, 563, 785, 1033, 1036
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	6 cut(s)	90, 252, 338, 378, 798, 887
MmeI	TCCRAC	2 cut(s)	475, 1047
Mph1103I	ATGCAT	1 cut(s)	562
MroI	TCCGGA	1 cut(s)	946
MseI	TTAA	5 cut(s)	80, 107, 231, 266, 860
MspI	CCGG	1 cut(s)	947
MspR9I	CCNGG	3 cut(s)	39, 324, 438
MvaI	CCWGG	3 cut(s)	39, 324, 438
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	599, 700, 935
NdeII	GATC	2 cut(s)	288, 304
NlaIII	CATG	5 cut(s)	35, 413, 602, 736, 914
NlaIV	GGNNCC	1 cut(s)	449
NruI	TCGCGA	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	2 cut(s)	413, 736
NspV	TTCGAA	1 cut(s)	796
PaeR7I	CTCGAG	1 cut(s)	711
PasI	CCCWGGG	1 cut(s)	323
PciI	ACATGT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	831, 943
PkrI	GCNGC	1 cut(s)	960
PpuMI	RGGWCCY	1 cut(s)	447
PscI	ACATGT	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	37, 322, 436
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	3 cut(s)	37, 322, 436
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	3 cut(s)	41, 434, 447
PspPPI	RGGWCCY	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	304
RruI	TCGCGA	1 cut(s)	394
RsaI	GTAC	3 cut(s)	473, 642, 1016
RsaNI	GTAC	3 cut(s)	472, 641, 1015
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	5 cut(s)	80, 107, 231, 266, 860
SatI	GCNGC	1 cut(s)	959
Sau3AI	GATC	2 cut(s)	288, 304
Sau96I	GGNCC	3 cut(s)	41, 434, 447
ScrFI	CCNGG	3 cut(s)	39, 324, 438
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	2 cut(s)	547, 925
Sfr274I	CTCGAG	1 cut(s)	711
SfuI	TTCGAA	1 cut(s)	796
SinI	GGWCC	2 cut(s)	41, 447
SlaI	CTCGAG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
SpeI	ACTAGT	1 cut(s)	637
Sse9I	AATT	6 cut(s)	90, 252, 338, 378, 798, 887
SspMI	CTAG	1 cut(s)	638
StyD4I	CCNGG	3 cut(s)	37, 322, 436
StyI	CCWWGG	1 cut(s)	978
TaaI	ACNGT	1 cut(s)	760
TaiI	ACGT	2 cut(s)	228, 359
TaqI	TCGA	4 cut(s)	382, 712, 796, 897
TasI	AATT	6 cut(s)	90, 252, 338, 378, 798, 887
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	2 cut(s)	831, 943
Tru1I	TTAA	5 cut(s)	80, 107, 231, 266, 860
Tru9I	TTAA	5 cut(s)	80, 107, 231, 266, 860
TscAI	CASTG	2 cut(s)	60, 752
TseI	GCWGC	1 cut(s)	958
TspDTI	ATGAA	5 cut(s)	332, 587, 742, 899, 956
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	2 cut(s)	60, 752
VpaK11BI	GGWCC	2 cut(s)	41, 447
XapI	RAATTY	3 cut(s)	90, 252, 798
XceI	RCATGY	2 cut(s)	413, 736
XhoI	CTCGAG	1 cut(s)	711
XspI	CTAG	1 cut(s)	638
ZraI	GACGTC	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.