Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007170

Physical Location & Seq

Genomic Coordinates Forward (+)

35039936 .. 35044404

Gene Structure 4469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45750.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAAAAGAAACGAACAGATGACAGTGAGACAGTTCCAGTTCCTCCACTGAGATTGGACAGATTTGGATTTGTAAAGCAGGAACCATCTCCTGATGGCTTACCCAAGGGAAGGTCAGCCTTGGAATTCGAGAGAGAGGAAAGGAAGGTTAGGAAATGGAGAAAGATGATTGGAGTGGGAGGCAGTGATTGGAAACATTATCTTAGGAGAAAACCTCATGTTGTCAAAAGAAGAATAAGAAAAGGAATTCCTGATTGTTTAAGAGGTCTGGTCTGGCAGTTGATCTCTGGAAGTCGGGATCTTTTGTTGATGAACCCTGGTGTTTATGAGCAATTAGTAATATATGAGACATCAGCTTCAGAGCTGGATATAATTCGAGATATATCCCGTACCTTCCCTTCACATGTTTTCTTCCAGCAGAGACATGGTCCTGGTCAAAGGTCTCTCTACAATGTTTTGAAGGCATACTCTGTCTTTGACAGAGATGTTGGATATGTTCAGGGAATGGGGTTTCTGGCCGGTCTATTGCTTCTTTATATGAGCGAGGAGGATGCATTTTGGTTATTGGTCGCGTTACTCAAAGGAGCGGTCCATGCACCAATGGAAGGATTATATCAGGTAGGTCTACCACTGGTACAACAATACCTTTTTCAGTTTGACCAGTTGGTAAGGGAGCACTTGCCAAAGCTGGGAGAGCATTTTACCGAAGAAATGATAAATCCCAGCATGTATGCAAGCCAGTGGTTCATTACTGTCTTTTCATATTCTTTTCCTTTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTACGAGGGTGTTAAAATCGTTTTTAAAGTTGGTTTGGCCCTATTAAAATATTGTCACGACGACTTGGTAAAATTACCCTTCGAGAAACTGATTCATGCTTTGCGTAACTTCCCCGAGGATGCGATGGATCCTGACACGTTACTTCCAATGGCTTATTCTATCAAGGTATCCAGGTGCTTGGAGGATTTGAAACATCAGTATGATAAGAAGAATGGGAAGAACCATGAGGCTACAAAGGATGAGAAACCGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

356

Amino Acids

41.29

Weight (kDa)

8.71

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	85 - 292	5e-61	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	147 - 305	1.5e-45	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02460 AT3G02460 AT3G02460 AT3G02460 AT5G15930
fragaria_vesca	FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750
malus_domestica	MD09G1080000.v1.1 MD17G1070500.v1.1
prunus_persica	Prupe.3G243700_v2.0.a1
pyrus_communis	pycom09g00670 pycom17g07040
rosa_chinensis	RchiOBHm_Chr2g0163941
rosa_laevigata	RLG00000021427
rosa_multiflora	Rmu_sc0006491.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086910
rosa_rugosa	Rorug02G0505100
rosa_samantha	Rh2AG573700 Rh2BG584400 Rh2CG555300 Rh2DG593800
rosa_wichuraiana	Rw2G047440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	1 cut(s)	572
AciI	CCGC	1 cut(s)	587
AclWI	GGATC	3 cut(s)	306, 932, 945
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	3 cut(s)	125, 246, 792
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	2 cut(s)	391, 636
AfiI	CCNNNNNNNGG	3 cut(s)	111, 605, 689
AflIII	ACRYGT	2 cut(s)	403, 945
AgsI	TTSAA	2 cut(s)	460, 1000
AjnI	CCWGG	3 cut(s)	316, 430, 980
AjuI	GAANNNNNNNTTGG	2 cut(s)	949, 981
AluBI	AGCT	3 cut(s)	356, 364, 688
AluI	AGCT	3 cut(s)	356, 364, 688
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	4 cut(s)	23, 341, 415, 447
AlwI	GGATC	3 cut(s)	306, 932, 945
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	2 cut(s)	516, 846
ApoI	RAATTY	3 cut(s)	125, 246, 792
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AspS9I	GGNCC	3 cut(s)	428, 589, 847
AsuII	TTCGAA	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	2 cut(s)	428, 589
BamHI	GGATCC	1 cut(s)	937
BarI	GAAGNNNNNNTAC	2 cut(s)	382, 414
Bbv12I	GWGCWC	1 cut(s)	678
BccI	CCATC	3 cut(s)	89, 94, 928
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	3 cut(s)	318, 432, 982
BciVI	GTATCC	1 cut(s)	988
BcoDI	GTCTC	4 cut(s)	23, 341, 415, 447
BfuI	GTATCC	1 cut(s)	988
Bme1390I	CCNGG	3 cut(s)	318, 432, 982
Bme18I	GGWCC	2 cut(s)	428, 589
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	3 cut(s)	428, 589, 847
BmiI	GGNNCC	2 cut(s)	84, 939
BmrFI	CCNGG	3 cut(s)	318, 432, 982
BmsI	GCATC	2 cut(s)	541, 919
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
Bpu14I	TTCGAA	1 cut(s)	790
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	4 cut(s)	105, 120, 316, 924
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 605, 689
Bse118I	RCCGGY	2 cut(s)	518, 1057
Bse1I	ACTGG	4 cut(s)	38, 636, 661, 739
BseBI	CCWGG	3 cut(s)	318, 432, 982
BseDI	CCNNGG	4 cut(s)	105, 120, 316, 924
BseGI	GGATG	4 cut(s)	556, 805, 934, 1054
BseLI	CCNNNNNNNGG	3 cut(s)	111, 605, 689
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	4 cut(s)	38, 636, 661, 739
BseRI	GAGGAG	1 cut(s)	560
BseYI	CCCAGC	2 cut(s)	688, 722
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	2 cut(s)	518, 848
BsiHKAI	GWGCWC	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	923
BsiSI	CCGG	2 cut(s)	519, 1058
BslI	CCNNNNNNNGG	3 cut(s)	111, 605, 689
BsmAI	GTCTC	4 cut(s)	23, 341, 415, 447
BsnI	GGCC	2 cut(s)	518, 848
Bso31I	GGTCTC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	923
Bsp119I	TTCGAA	1 cut(s)	790
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	282, 298, 937
BspACI	CCGC	1 cut(s)	587
BspANI	GGCC	2 cut(s)	518, 848
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	84, 939
BspPI	GGATC	3 cut(s)	306, 932, 945
BspQI	GCTCTTC	1 cut(s)	792
BspT104I	TTCGAA	1 cut(s)	790
BspTNI	GGTCTC	1 cut(s)	447
BsrBI	CCGCTC	1 cut(s)	587
BsrFI	RCCGGY	2 cut(s)	518, 1057
BsrI	ACTGG	4 cut(s)	38, 636, 661, 739
BssAI	RCCGGY	2 cut(s)	518, 1057
BssECI	CCNNGG	4 cut(s)	105, 120, 316, 924
BssMI	GATC	3 cut(s)	282, 298, 937
BssT1I	CCWWGG	2 cut(s)	105, 120
Bst2UI	CCWGG	3 cut(s)	318, 432, 982
Bst4CI	ACNGT	3 cut(s)	26, 34, 754
Bst6I	CTCTTC	1 cut(s)	792
BstBI	TTCGAA	1 cut(s)	790
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	2 cut(s)	50, 203
BstF5I	GGATG	4 cut(s)	556, 805, 934, 1054
BstFNI	CGCG	1 cut(s)	572
BstKTI	GATC	3 cut(s)	285, 301, 940
BstMAI	GTCTC	4 cut(s)	23, 341, 415, 447
BstMBI	GATC	3 cut(s)	282, 298, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 694
BstNI	CCWGG	3 cut(s)	318, 432, 982
BstNSI	RCATGY	2 cut(s)	407, 730
BstSCI	CCNGG	3 cut(s)	316, 430, 980
BstUI	CGCG	1 cut(s)	572
BstX2I	RGATCY	2 cut(s)	298, 937
BstXI	CCANNNNNNTGG	1 cut(s)	988
BstYI	RGATCY	2 cut(s)	298, 937
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	2 cut(s)	518, 848
BtgZI	GCGATG	1 cut(s)	947
BtsCI	GGATG	4 cut(s)	556, 805, 934, 1054
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	5 cut(s)	31, 47, 190, 629, 746
Cac8I	GCNNGC	1 cut(s)	736
Cfr10I	RCCGGY	2 cut(s)	518, 1057
Cfr13I	GGNCC	3 cut(s)	428, 589, 847
Csp6I	GTAC	2 cut(s)	390, 635
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	7 cut(s)	218, 404, 425, 593, 727, 905, 1034
CviQI	GTAC	2 cut(s)	390, 635
DdeI	CTNAG	2 cut(s)	50, 203
DpnI	GATC	3 cut(s)	284, 300, 939
DpnII	GATC	3 cut(s)	282, 298, 937
DraI	TTTAAA	1 cut(s)	835
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco130I	CCWWGG	2 cut(s)	105, 120
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	2 cut(s)	428, 589
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	923
EcoRI	GAATTC	2 cut(s)	125, 246
EcoRII	CCWGG	3 cut(s)	316, 430, 980
EcoT14I	CCWWGG	2 cut(s)	105, 120
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	2 cut(s)	105, 120
FaeI	CATG	7 cut(s)	221, 407, 428, 596, 730, 908, 1037
FatI	CATG	7 cut(s)	217, 403, 424, 592, 726, 904, 1033
FblI	GTMKAC	1 cut(s)	625
FokI	GGATG	4 cut(s)	563, 812, 941, 1061
GsaI	CCCAGC	2 cut(s)	692, 726
HaeIII	GGCC	2 cut(s)	518, 848
HapII	CCGG	2 cut(s)	519, 1058
Hin1II	CATG	7 cut(s)	221, 407, 428, 596, 730, 908, 1037
HinfI	GANTC	1 cut(s)	901
HpaII	CCGG	2 cut(s)	519, 1058
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	9 cut(s)	92, 130, 251, 288, 296, 377, 866, 892, 941
Hpy8I	GTNNAC	1 cut(s)	626
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	7 cut(s)	105, 139, 403, 408, 454, 599, 898
HpyCH4III	ACNGT	3 cut(s)	26, 34, 754
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	3 cut(s)	554, 596, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 694
HpyF3I	CTNAG	2 cut(s)	50, 203
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	7 cut(s)	221, 407, 428, 596, 730, 908, 1037
Kzo9I	GATC	3 cut(s)	282, 298, 937
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	2 cut(s)	584, 673
LweI	GCATC	2 cut(s)	541, 919
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	4 cut(s)	573, 863, 914, 948
MalI	GATC	3 cut(s)	284, 300, 939
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	3 cut(s)	282, 298, 937
MboII	GAAGA	6 cut(s)	243, 403, 719, 779, 1030, 1039
MflI	RGATCY	2 cut(s)	298, 937
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	6 cut(s)	125, 246, 332, 372, 792, 881
MmeI	TCCRAC	1 cut(s)	469
Mph1103I	ATGCAT	1 cut(s)	556
MseI	TTAA	4 cut(s)	260, 822, 834, 854
MslI	CAYNNNNRTG	1 cut(s)	1008
MspI	CCGG	2 cut(s)	519, 1058
MspR9I	CCNGG	3 cut(s)	318, 432, 982
MvaI	CCWGG	3 cut(s)	318, 432, 982
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	2 cut(s)	593, 694
NdeII	GATC	3 cut(s)	282, 298, 937
NlaIII	CATG	7 cut(s)	221, 407, 428, 596, 730, 908, 1037
NlaIV	GGNNCC	2 cut(s)	84, 939
NmuCI	GTSAC	1 cut(s)	863
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	407, 730
NspV	TTCGAA	1 cut(s)	790
PciI	ACATGT	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	901
PflFI	GACNNNGTC	1 cut(s)	426
PscI	ACATGT	1 cut(s)	403
Psp6I	CCWGG	3 cut(s)	316, 430, 980
PspFI	CCCAGC	2 cut(s)	688, 722
PspGI	CCWGG	3 cut(s)	316, 430, 980
PspN4I	GGNNCC	2 cut(s)	84, 939
PspPI	GGNCC	3 cut(s)	428, 589, 847
PsuI	RGATCY	2 cut(s)	298, 937
PsyI	GACNNNGTC	1 cut(s)	426
RsaI	GTAC	2 cut(s)	391, 636
RsaNI	GTAC	2 cut(s)	390, 635
RseI	CAYNNNNRTG	1 cut(s)	1008
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	4 cut(s)	260, 822, 834, 854
Sau3AI	GATC	3 cut(s)	282, 298, 937
Sau96I	GGNCC	3 cut(s)	428, 589, 847
ScrFI	CCNGG	3 cut(s)	318, 432, 982
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	2 cut(s)	541, 919
SfuI	TTCGAA	1 cut(s)	790
SinI	GGWCC	2 cut(s)	428, 589
SmiMI	CAYNNNNRTG	1 cut(s)	1008
Sse9I	AATT	6 cut(s)	125, 246, 332, 372, 792, 881
SsiI	CCGC	1 cut(s)	587
SspI	AATATT	1 cut(s)	860
StyD4I	CCNGG	3 cut(s)	316, 430, 980
StyI	CCWWGG	2 cut(s)	105, 120
TaaI	ACNGT	3 cut(s)	26, 34, 754
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	4 cut(s)	129, 376, 790, 891
TasI	AATT	6 cut(s)	125, 246, 332, 372, 792, 881
TfiI	GAWTC	1 cut(s)	901
Tru1I	TTAA	4 cut(s)	260, 822, 834, 854
Tru9I	TTAA	4 cut(s)	260, 822, 834, 854
TscAI	CASTG	5 cut(s)	31, 54, 190, 636, 746
TseFI	GTSAC	1 cut(s)	863
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	4 cut(s)	326, 736, 750, 893
TspRI	CASTG	5 cut(s)	31, 54, 190, 636, 746
Tth111I	GACNNNGTC	1 cut(s)	426
VpaK11BI	GGWCC	2 cut(s)	428, 589
XapI	RAATTY	3 cut(s)	125, 246, 792
XceI	RCATGY	2 cut(s)	407, 730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.