Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007170

Physical Location & Seq

Genomic Coordinates Forward (+)

80355441 .. 80360100

Gene Structure 4660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG573700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATTGGAGTTGGAGGCAGTGATTGGAAATATTATCTTAGGAGAAAACCTCATGTTGTCAAAAGGAGAATAAGAAAAGGAATTCCTGATTGTTTAAGAGGTCTGGTATGGCAGTTGATCTCTGGAAGTCGGGATCTTTTGTTGATGAACCCTGGTGTTTATGAGCAATTGGTAATTTATGAGACATCAGCTTCAGAGCTGGATATAATTCGAGATATATCGCGTACCTTCCCTTCACATGTTTTCTTCCAGCAGAGACATGGTCCTGGTCAGAGGTCTCTCTACAATGTTTTGAAGGCATACTCTGTCTTTGACAGAGATGTTGGATATGTTCAGGGAATGGGGTTTCTGGCTGGTCTATTGCTTCTTTATATGAGCGAGGAGGATGCATTTTGGTTATTGGTCGCATTACTGAAAGGAGCAGTCCATGCACCAATGGAAGGATTATATCAGGTAGGTCTACCACTGGTACAACAATACCTTTTCCAGTTTGACCAGTTGGTAAGGGAGCAGTTGCCAAAGCTCGGAGAGCATTTTACCCAAGAAATGATAAATCCCAGCATGTATGCAAGCCAGTGGTTCATTACAGTTTTTTCATATTCTTTTCCTTTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGGGTGTTAAAATCGTTTTTAAAGTTGGTTTGGCCCTATTAAAATATTGCCACGACGACTTGGTAAAATTACCCTTCGAGAAACTTATCCATGCTTTGCGTAACTTCCCCGAGGATGCAATGGACCCTGACACGTTACTTCCAATGGCTTACTCTATCAAGGTATCCAAGTGCTTGGAGGAATTGAAACAGCAGTATGATAAGAAGAATGGGAAAAACCTTAAGCCTACAGAGGATGAGAAACCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

299

Amino Acids

34.62

Weight (kDa)

8.26

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	30 - 237	1.1e-60	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	92 - 250	1.1e-45	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02460 AT3G02460 AT3G02460 AT3G02460 AT5G15930
fragaria_vesca	FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750
malus_domestica	MD09G1080000.v1.1 MD17G1070500.v1.1
prunus_persica	Prupe.3G243700_v2.0.a1
pyrus_communis	pycom09g00670 pycom17g07040
rosa_chinensis	RchiOBHm_Chr2g0163941
rosa_laevigata	RLG00000021427
rosa_multiflora	Rmu_sc0006491.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086910
rosa_rugosa	Rorug02G0505100
rosa_samantha	Rh2AG573700 Rh2BG584400 Rh2CG555300 Rh2DG593800
rosa_wichuraiana	Rw2G047440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	1 cut(s)	223
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	81, 627
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	226, 471
AfiI	CCNNNNNNNGG	2 cut(s)	440, 524
AflII	CTTAAG	1 cut(s)	869
AflIII	ACRYGT	2 cut(s)	238, 780
AgsI	TTSAA	2 cut(s)	295, 835
AjnI	CCWGG	2 cut(s)	151, 265
AluBI	AGCT	3 cut(s)	191, 199, 523
AluI	AGCT	3 cut(s)	191, 199, 523
Alw26I	GTCTC	3 cut(s)	176, 250, 282
AlwI	GGATC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	758
AoxI	GGCC	1 cut(s)	681
ApoI	RAATTY	2 cut(s)	81, 627
AspS9I	GGNCC	3 cut(s)	263, 682, 772
AsuII	TTCGAA	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	263, 772
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	153, 267
BciVI	GTATCC	1 cut(s)	823
BcoDI	GTCTC	3 cut(s)	176, 250, 282
BfmI	CTRYAG	1 cut(s)	876
BfrI	CTTAAG	1 cut(s)	869
BfuI	GTATCC	1 cut(s)	823
Bme1390I	CCNGG	2 cut(s)	153, 267
Bme18I	GGWCC	2 cut(s)	263, 772
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	3 cut(s)	263, 682, 772
BmiI	GGNNCC	1 cut(s)	774
BmrFI	CCNGG	2 cut(s)	153, 267
BmsI	GCATC	2 cut(s)	376, 754
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu14I	TTCGAA	1 cut(s)	625
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	151, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 524
Bse118I	RCCGGY	1 cut(s)	892
Bse1I	ACTGG	4 cut(s)	471, 487, 496, 574
Bse3DI	GCAATG	1 cut(s)	774
BseBI	CCWGG	2 cut(s)	153, 267
BseDI	CCNNGG	2 cut(s)	151, 759
BseGI	GGATG	4 cut(s)	391, 640, 769, 889
BseLI	CCNNNNNNNGG	2 cut(s)	440, 524
BseMI	GCAATG	1 cut(s)	774
BseNI	ACTGG	4 cut(s)	471, 487, 496, 574
BseRI	GAGGAG	1 cut(s)	395
BseYI	CCCAGC	1 cut(s)	557
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	683
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	1 cut(s)	893
BslI	CCNNNNNNNGG	2 cut(s)	440, 524
BsmAI	GTCTC	3 cut(s)	176, 250, 282
BsnI	GGCC	1 cut(s)	683
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	758
Bsp119I	TTCGAA	1 cut(s)	625
Bsp143I	GATC	2 cut(s)	117, 133
BspANI	GGCC	1 cut(s)	683
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	774
BspPI	GGATC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	627
BspT104I	TTCGAA	1 cut(s)	625
BspTI	CTTAAG	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	892
BsrI	ACTGG	4 cut(s)	471, 487, 496, 574
BssAI	RCCGGY	1 cut(s)	892
BssECI	CCNNGG	2 cut(s)	151, 759
BssMI	GATC	2 cut(s)	117, 133
Bst2UI	CCWGG	2 cut(s)	153, 267
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	627
BstAFI	CTTAAG	1 cut(s)	869
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	391, 640, 769, 889
BstFNI	CGCG	1 cut(s)	223
BstKTI	GATC	2 cut(s)	120, 136
BstMAI	GTCTC	3 cut(s)	176, 250, 282
BstMBI	GATC	2 cut(s)	117, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 529
BstNI	CCWGG	2 cut(s)	153, 267
BstNSI	RCATGY	2 cut(s)	242, 565
BstSCI	CCNGG	2 cut(s)	151, 265
BstSFI	CTRYAG	1 cut(s)	876
BstUI	CGCG	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	683
BtsCI	GGATG	4 cut(s)	391, 640, 769, 889
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 464, 581
Cac8I	GCNNGC	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	892
Cfr13I	GGNCC	3 cut(s)	263, 682, 772
Csp6I	GTAC	2 cut(s)	225, 470
CviAII	CATG	6 cut(s)	53, 239, 260, 428, 562, 740
CviQI	GTAC	2 cut(s)	225, 470
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	2 cut(s)	119, 135
DpnII	GATC	2 cut(s)	117, 133
DraI	TTTAAA	1 cut(s)	670
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	263, 772
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	758
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	151, 265
EcoT22I	ATGCAT	1 cut(s)	391
FaeI	CATG	6 cut(s)	56, 242, 263, 431, 565, 743
FatI	CATG	6 cut(s)	52, 238, 259, 427, 561, 739
FblI	GTMKAC	1 cut(s)	460
FokI	GGATG	4 cut(s)	398, 647, 776, 896
GsaI	CCCAGC	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	683
HapII	CCGG	1 cut(s)	893
Hin1II	CATG	6 cut(s)	56, 242, 263, 431, 565, 743
HpaII	CCGG	1 cut(s)	893
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	3 cut(s)	196, 273, 527
Hpy188III	TCNNGA	5 cut(s)	86, 123, 131, 212, 727
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	5 cut(s)	238, 243, 289, 434, 733
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	4 cut(s)	389, 431, 569, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 529
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	782
Hsp92II	CATG	6 cut(s)	56, 242, 263, 431, 565, 743
Kzo9I	GATC	2 cut(s)	117, 133
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	419, 508
LweI	GCATC	2 cut(s)	376, 754
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	2 cut(s)	749, 783
MalI	GATC	2 cut(s)	119, 135
MboI	GATC	2 cut(s)	117, 133
MboII	GAAGA	3 cut(s)	238, 614, 865
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	7 cut(s)	81, 167, 174, 207, 627, 716, 830
MmeI	TCCRAC	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	6 cut(s)	95, 657, 669, 689, 870, 898
MspCI	CTTAAG	1 cut(s)	869
MspI	CCGG	1 cut(s)	893
MspR9I	CCNGG	2 cut(s)	153, 267
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	2 cut(s)	153, 267
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	428, 529
NdeII	GATC	2 cut(s)	117, 133
NlaIII	CATG	6 cut(s)	56, 242, 263, 431, 565, 743
NlaIV	GGNNCC	1 cut(s)	774
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	242, 565
NspV	TTCGAA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	627
PflFI	GACNNNGTC	1 cut(s)	261
PscI	ACATGT	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	151, 265
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	2 cut(s)	151, 265
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	3 cut(s)	263, 682, 772
PsuI	RGATCY	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	261
RsaI	GTAC	2 cut(s)	226, 471
RsaNI	GTAC	2 cut(s)	225, 470
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	6 cut(s)	95, 657, 669, 689, 870, 898
Sau3AI	GATC	2 cut(s)	117, 133
Sau96I	GGNCC	3 cut(s)	263, 682, 772
ScrFI	CCNGG	2 cut(s)	153, 267
SfaNI	GCATC	2 cut(s)	376, 754
SfcI	CTRYAG	1 cut(s)	876
SfuI	TTCGAA	1 cut(s)	625
SinI	GGWCC	2 cut(s)	263, 772
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	7 cut(s)	81, 167, 174, 207, 627, 716, 830
SspI	AATATT	2 cut(s)	32, 695
StyD4I	CCNGG	2 cut(s)	151, 265
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	3 cut(s)	211, 625, 726
TasI	AATT	7 cut(s)	81, 167, 174, 207, 627, 716, 830
Tru1I	TTAA	6 cut(s)	95, 657, 669, 689, 870, 898
Tru9I	TTAA	6 cut(s)	95, 657, 669, 689, 870, 898
TscAI	CASTG	3 cut(s)	25, 471, 581
TspDTI	ATGAA	3 cut(s)	161, 571, 585
TspRI	CASTG	3 cut(s)	25, 471, 581
Tth111I	GACNNNGTC	1 cut(s)	261
Vha464I	CTTAAG	1 cut(s)	869
VpaK11BI	GGWCC	2 cut(s)	263, 772
XapI	RAATTY	2 cut(s)	81, 627
XceI	RCATGY	2 cut(s)	242, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	460
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.