AT5G16550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014266
Physical Location & Seq
Forward (+)
5405346 .. 5406887
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16550.1

Sequence Viewer

Length: 750 bp
ATGGCGCAAGATCACGACGAGACGGAGAATAAAACCTTTGCCGACGTTGTCGGTGGCGATGATGTCGGCGAAATTGTCAACGGAGGAACAAAGAATGGCTATCGTAAACCGGACTCTGTGGAGAAGGAAGATGATGAGGATTTGAAGAGTCTCTATTCCTTGATTTGTCTCACGATCGGTTCGATTCTGTTTCCAGATTCGAAAACCGGTGATGCGTCTTCGTTTCTTGAACGTGTAAGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGACGCGAGATTCTTCTCTGGACTCGTAGAGGCAGCTCGCTTCGTGCTCTGCTTGTCATCACTATGGGAACAATAGTTCTTTTGACAACAATGGCTTTGGTTGTATTCACACTCTTCTTTGTAGCTGCAACAGCCAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGTGGCTTCTTGGCACTCTTCTTTCTCTGCTTGACTGGTGTTTACATTGGAGCCTTATCCGTTGCTGCATTCGTCATCTCTACCGCTACAGTTTCTGCTGTCGTTTCTGTCTTAATAGCTTCAGGTTGGATTGGGTTTTTCTATGCGGTGTGGTTGGGAACAAGAGGAAGCCTACGCTTGGCTAAGCAATCGGTTTCAGTGGTGGGATCAGCCATTTCAGGTAACACTATCAGTCGTCATCAACACCAAGACCGGGAGGTAAACATCGAATCAACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

26.62

Weight (kDa)

5.44

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16550
fragaria_vesca FvH4_1g28640
malus_domestica MD09G1265200.v1.1 MD17G1261400.v1.1
prunus_persica Prupe.3G163400_v2.0.a1
pyrus_communis pycom09g17900 pycom17g26190
rosa_chinensis RchiOBHm_Chr3g0492651
rosa_laevigata RLG00000022752
rosa_multiflora Rmu_sc0000831.1_g000016
rosa_roxburghii Rroxscaffold_6G00392160
rosa_rugosa Rorug03G0255300.1
rosa_samantha Rh3AG305600 Rh3BG342000 Rh3CG339400 Rh3DG341300
rosa_wichuraiana Rw3G026900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 297
AciI CCGC 2 cut(s) 552, 614
AclWI GGATC 1 cut(s) 682
AcuI CTGAAG 1 cut(s) 573
AfiI CCNNNNNNNGG 2 cut(s) 646, 721
AflIII ACRYGT 1 cut(s) 232
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 2 cut(s) 145, 230
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 5 cut(s) 268, 278, 327, 416, 587
AluI AGCT 5 cut(s) 268, 278, 327, 416, 587
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 3 cut(s) 14, 155, 173
AlwI GGATC 1 cut(s) 682
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 324, 416, 533
AsiGI ACCGGT 1 cut(s) 206
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 722
AsuHPI GGTGA 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 3 cut(s) 336, 403, 520
BcnI CCSGG 1 cut(s) 722
BcoDI GTCTC 3 cut(s) 14, 155, 173
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 3 cut(s) 325, 417, 534
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 3 cut(s) 326, 418, 535
Bme1390I CCNGG 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 1 cut(s) 722
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 722
BsaWI WCCGGW 2 cut(s) 109, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 646, 721
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 646, 721
BseNI ACTGG 1 cut(s) 508
BseXI GCAGC 3 cut(s) 336, 403, 520
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 262
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 3 cut(s) 110, 207, 721
BslI CCNNNNNNNGG 2 cut(s) 646, 721
BsmAI GTCTC 3 cut(s) 14, 155, 173
BsmBI CGTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 3 cut(s) 10, 174, 674
Bsp1720I GCTNAGC 1 cut(s) 651
BspACI CCGC 2 cut(s) 552, 614
BspANI GGCC 1 cut(s) 262
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 520
BspPI GGATC 1 cut(s) 682
BspT104I TTCGAA 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 3 cut(s) 10, 174, 674
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 4 cut(s) 140, 410, 450, 491
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 264, 651
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 13, 177, 677
BstMAI GTCTC 3 cut(s) 14, 155, 173
BstMBI GATC 3 cut(s) 10, 174, 674
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 720
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 336, 403, 520
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 2 cut(s) 204, 303
CspAI ACCGGT 1 cut(s) 206
DdeI CTNAG 2 cut(s) 264, 651
DpnI GATC 3 cut(s) 12, 176, 676
DpnII GATC 3 cut(s) 10, 174, 674
Eam1104I CTCTTC 4 cut(s) 140, 410, 450, 491
EarI CTCTTC 4 cut(s) 140, 410, 450, 491
Eco57I CTGAAG 1 cut(s) 573
Esp3I CGTCTC 1 cut(s) 14
FaiI YATR 3 cut(s) 356, 437, 612
Fnu4HI GCNGC 3 cut(s) 325, 417, 534
Fsp4HI GCNGC 3 cut(s) 325, 417, 534
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 325, 417, 534
HaeIII GGCC 1 cut(s) 262
HapII CCGG 3 cut(s) 110, 207, 721
HgaI GACGC 2 cut(s) 204, 303
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 2 cut(s) 266, 276
HinfI GANTC 7 cut(s) 113, 148, 184, 197, 301, 313, 737
HpaII CCGG 3 cut(s) 110, 207, 721
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 4 cut(s) 79, 107, 511, 730
Hpy188I TCNGA 2 cut(s) 283, 450
Hpy188III TCNNGA 6 cut(s) 14, 172, 194, 227, 272, 310
Hpy8I GTNNAC 4 cut(s) 79, 107, 511, 730
Hpy99I CGWCG 3 cut(s) 20, 47, 251
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 2 cut(s) 45, 232
HpyCH4V TGCA 2 cut(s) 419, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 2 cut(s) 264, 651
HpySE526I ACGT 2 cut(s) 45, 232
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 10, 174, 674
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 3 cut(s) 336, 403, 520
LweI GCATC 1 cut(s) 202
MaeII ACGT 2 cut(s) 45, 232
MaeIII GTNAC 1 cut(s) 689
MalI GATC 3 cut(s) 12, 176, 676
MboI GATC 3 cut(s) 10, 174, 674
MboII GAAGA 7 cut(s) 140, 157, 210, 296, 397, 437, 478
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 1 cut(s) 72
MlyI GAGTC 3 cut(s) 107, 157, 307
MmeI TCCRAC 1 cut(s) 575
MnlI CCTC 5 cut(s) 77, 130, 314, 626, 718
MseI TTAA 1 cut(s) 581
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 3 cut(s) 110, 207, 721
MspR9I CCNGG 1 cut(s) 722
Mva1269I GAATGC 1 cut(s) 536
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 1 cut(s) 722
NdeII GATC 3 cut(s) 10, 174, 674
NlaIV GGNNCC 1 cut(s) 520
NspV TTCGAA 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 4 cut(s) 184, 197, 301, 737
PflFI GACNNNGTC 1 cut(s) 47
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 3 cut(s) 326, 418, 535
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 3 cut(s) 107, 156, 307
PpsI GAGTC 3 cut(s) 107, 156, 307
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 563
PsyI GACNNNGTC 1 cut(s) 47
PvuI CGATCG 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 3 cut(s) 325, 417, 534
Sau3AI GATC 3 cut(s) 10, 174, 674
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 3 cut(s) 107, 157, 307
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 1 cut(s) 72
SsiI CCGC 2 cut(s) 552, 614
StyD4I CCNGG 1 cut(s) 720
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 2 cut(s) 48, 235
TaqI TCGA 4 cut(s) 182, 200, 271, 735
TasI AATT 1 cut(s) 72
TfiI GAWTC 4 cut(s) 184, 197, 301, 737
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 1 cut(s) 672
TseI GCWGC 3 cut(s) 324, 416, 533
TspGWI ACGGA 4 cut(s) 38, 96, 235, 517
TspRI CASTG 1 cut(s) 672
Tth111I GACNNNGTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.