FvH4_1g28640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014266
Physical Location & Seq
Reverse (-)
20938074 .. 20943335
5262 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28640.t1

Sequence Viewer

Length: 645 bp
ATGGCGAAGAAGAACGGTGGAGTCGACGTGGAGGTGGAGACCAAAGTGATCCACCGCGGGGACGACACTCTCTTTGCTGTCGTCAACCGACTCTTTGGTTCCATTCTGTTTCCCGACCCCAACAACAGTGCTGCTCCGCTGTTTCACCGGATCAAGACCTCTATCGCCCAGAATGGTCCGCTATTTCCGGAAGCTTCTAGAAACACCGGTCGGAGCGTGCTTGCCTGGACTCGTCAGGGCAGTCCTCTCCGAGCACTCCTCGTCATCTCTGTTGGCACAATCACTCTTCTGGCTTTGACAGGATTGCTTGTCTTCATGCTTTTTTTCCTGGCAGCAACTTTCAATGCCATTGTTATCTCGCTTTTGTTATCTTTGGCAGCTGCAGGAGGATTCTTGGCCCTCTTCTTTACCTGTGTAGCAGCTATATACATTGGAGCACTATCAGTTGCCATTTTTGTTATTTCCACTACAACAATTTCTGCAATTGTAGCTGTTCTGATAACTACAGGTTGGATCGGGTTCTTTTGGTTCGTGTGGCTGGCAAGTAAGAAAAGTCTAAGCCTTGCTAAGCACTCACTTAGCAAGACTGGTTCAACCATTTCAGCTTACTCTTATGGAATGCATGCTGACAAGGCTTCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

22.71

Weight (kDa)

10.0

Isoelectric Point (pI)

17.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16550
fragaria_vesca FvH4_1g28640
malus_domestica MD09G1265200.v1.1 MD17G1261400.v1.1
prunus_persica Prupe.3G163400_v2.0.a1
pyrus_communis pycom09g17900 pycom17g26190
rosa_chinensis RchiOBHm_Chr3g0492651
rosa_laevigata RLG00000022752
rosa_multiflora Rmu_sc0000831.1_g000016
rosa_roxburghii Rroxscaffold_6G00392160
rosa_rugosa Rorug03G0255300.1
rosa_samantha Rh3AG305600 Rh3BG342000 Rh3CG339400 Rh3DG341300
rosa_wichuraiana Rw3G026900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 4 cut(s) 55, 57, 137, 179
AclWI GGATC 3 cut(s) 43, 158, 521
AcuI CTGAAG 1 cut(s) 621
AfiI CCNNNNNNNGG 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 2 cut(s) 343, 594
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 2 cut(s) 224, 327
AluBI AGCT 5 cut(s) 194, 380, 422, 491, 605
AluI AGCT 5 cut(s) 194, 380, 422, 491, 605
Alw21I GWGCWC 2 cut(s) 256, 439
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 3 cut(s) 43, 158, 521
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 5 cut(s) 131, 332, 377, 380, 419
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AsiGI ACCGGT 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 176, 397
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 2 cut(s) 256, 439
BbvI GCAGC 5 cut(s) 118, 344, 367, 389, 431
BciT130I CCWGG 2 cut(s) 226, 329
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 2 cut(s) 381, 504
BisI GCNGC 5 cut(s) 132, 333, 378, 381, 420
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 5 cut(s) 133, 334, 379, 382, 421
Bme1390I CCNGG 2 cut(s) 226, 329
Bme18I GGWCC 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 176, 397
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 226, 329
BpiI GAAGAC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 243, 275
Bpu1102I GCTNAGC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 3 cut(s) 147, 187, 206
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 592
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 2 cut(s) 226, 329
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 5 cut(s) 118, 344, 367, 389, 431
Bsh1236I CGCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 398
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 256, 439
BsiSI CCGG 3 cut(s) 148, 188, 207
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 256, 439
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 3 cut(s) 48, 150, 513
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 4 cut(s) 55, 57, 137, 179
BspANI GGCC 1 cut(s) 398
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 3 cut(s) 43, 158, 521
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 592
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 3 cut(s) 48, 150, 513
Bst2UI CCWGG 2 cut(s) 226, 329
Bst4CI ACNGT 2 cut(s) 17, 128
Bst6I CTCTTC 2 cut(s) 291, 407
BstC8I GCNNGC 4 cut(s) 218, 222, 540, 624
BstDEI CTNAG 3 cut(s) 557, 567, 578
BstDSI CCRYGG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 3 cut(s) 51, 153, 516
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 48, 150, 513
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 488, 632
BstNI CCWGG 2 cut(s) 226, 329
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 224, 327
BstSFI CTRYAG 2 cut(s) 381, 504
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 5 cut(s) 118, 344, 367, 389, 431
BstV2I GAAGAC 1 cut(s) 304
BsuRI GGCC 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 55
BtrI CACGTC 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 4 cut(s) 218, 222, 540, 624
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 176, 397
Cfr42I CCGCGG 1 cut(s) 58
CspAI ACCGGT 1 cut(s) 206
CviAII CATG 2 cut(s) 316, 623
DdeI CTNAG 3 cut(s) 557, 567, 578
DpnI GATC 3 cut(s) 50, 152, 515
DpnII GATC 3 cut(s) 48, 150, 513
Eam1104I CTCTTC 2 cut(s) 291, 407
EarI CTCTTC 2 cut(s) 291, 407
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 621
EcoRII CCWGG 2 cut(s) 224, 327
EcoT22I ATGCAT 1 cut(s) 624
FaeI CATG 2 cut(s) 319, 626
FaiI YATR 5 cut(s) 317, 425, 427, 615, 624
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 315, 622
FauI CCCGC 1 cut(s) 50
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 132, 333, 378, 381, 420
Fsp4HI GCNGC 5 cut(s) 132, 333, 378, 381, 420
FspBI CTAG 1 cut(s) 198
GluI GCNGC 5 cut(s) 132, 333, 378, 381, 420
HaeIII GGCC 1 cut(s) 398
HapII CCGG 3 cut(s) 148, 188, 207
Hin1II CATG 2 cut(s) 319, 626
HincII GTYRAC 2 cut(s) 25, 85
HindII GTYRAC 2 cut(s) 25, 85
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 4 cut(s) 21, 90, 229, 390
HpaII CCGG 3 cut(s) 148, 188, 207
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 25, 85
Hpy188I TCNGA 3 cut(s) 213, 251, 498
Hpy188III TCNNGA 4 cut(s) 113, 154, 188, 198
Hpy8I GTNNAC 2 cut(s) 25, 85
Hpy99I CGWCG 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 17, 128
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 383, 482, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 632
HpyF3I CTNAG 3 cut(s) 557, 567, 578
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 319, 626
Kpn2I TCCGGA 1 cut(s) 187
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 3 cut(s) 48, 150, 513
LmnI GCTCC 3 cut(s) 139, 213, 434
Lsp1109I GCAGC 5 cut(s) 118, 344, 367, 389, 431
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 27
MalI GATC 3 cut(s) 50, 152, 515
MboI GATC 3 cut(s) 48, 150, 513
MboII GAAGA 5 cut(s) 19, 22, 278, 304, 394
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 256, 439
MluCI AATT 2 cut(s) 474, 483
MlyI GAGTC 3 cut(s) 30, 84, 223
MmeI TCCRAC 2 cut(s) 191, 491
MnlI CCTC 6 cut(s) 25, 169, 255, 269, 380, 410
Mph1103I ATGCAT 1 cut(s) 624
MroI TCCGGA 1 cut(s) 187
MspA1I CMGCKG 3 cut(s) 57, 139, 380
MspI CCGG 3 cut(s) 148, 188, 207
MspR9I CCNGG 2 cut(s) 226, 329
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 226, 329
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 488, 632
NdeII GATC 3 cut(s) 48, 150, 513
NlaIII CATG 2 cut(s) 319, 626
NlaIV GGNNCC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 624
NspI RCATGY 1 cut(s) 626
PaeI GCATGC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 390
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 5 cut(s) 133, 334, 379, 382, 421
PleI GAGTC 3 cut(s) 29, 84, 223
PpsI GAGTC 3 cut(s) 29, 84, 223
Psp6I CCWGG 2 cut(s) 224, 327
PspGI CCWGG 2 cut(s) 224, 327
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 176, 397
PstI CTGCAG 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 380
SacII CCGCGG 1 cut(s) 58
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 5 cut(s) 132, 333, 378, 381, 420
Sau3AI GATC 3 cut(s) 48, 150, 513
Sau96I GGNCC 2 cut(s) 176, 397
SchI GAGTC 3 cut(s) 30, 84, 223
ScrFI CCNGG 2 cut(s) 226, 329
SduI GDGCHC 2 cut(s) 256, 439
SfcI CTRYAG 2 cut(s) 381, 504
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 1 cut(s) 176
SphI GCATGC 1 cut(s) 626
Sse9I AATT 2 cut(s) 474, 483
SsiI CCGC 4 cut(s) 55, 57, 137, 179
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 224, 327
TaaI ACNGT 2 cut(s) 17, 128
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 474, 483
TfiI GAWTC 1 cut(s) 390
TscAI CASTG 1 cut(s) 133
TseI GCWGC 5 cut(s) 131, 332, 377, 380, 419
TspDTI ATGAA 1 cut(s) 304
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.