Rh3DG341300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014266
Physical Location & Seq
Reverse (-)
38146670 .. 38152423
5754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG341300.1

Sequence Viewer

Length: 540 bp
ATGGCGGGGGCGAACGGTGGAGGAGTCGACGTGGAGGTTAGCGAAGGCGAGGTCAAACTGATCCAGCGAGAGGACGAGACTCTGTTGGGTGTCGTCAACCGTGTGATTGGTGCCATTTTGTTTCCGGACCCCAGCAGTGGTGCTCCGCTGTTTCATCGGATCAAGACCTCTCTCGCCGAGAATGGTACGCTCTTTCGGGAAGCTTCTAGAAACACTGGACGCAGCGTTCTTAACTGGACTCGTCAGGGAAGTCTTCTCCGAGCACTCCTCGTCATCTCTGTTGGCACAATCACTTTTTTGGCTTTGACAGGATTGCTTGTCTTCATGCTTTTTTTCCTGGCAGCAACTTTCAATGCCATTGTTATCTCGCTTTTATTATCTTTGGCAGCTGCAGGAGGATTCTTGGCCTTCTTCTTTACCTGTATAGCAGCTATATACATTGGAGCACTATCAGTTGCCGTTTTTGTTGTTTCCATGACAACAATTTCTGCGATTATAGCTGTTCTGATAACTACAGGTACAACGTTATTTGCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

18.79

Weight (kDa)

6.72

Isoelectric Point (pI)

15.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16550
fragaria_vesca FvH4_1g28640
malus_domestica MD09G1265200.v1.1 MD17G1261400.v1.1
prunus_persica Prupe.3G163400_v2.0.a1
pyrus_communis pycom09g17900 pycom17g26190
rosa_chinensis RchiOBHm_Chr3g0492651
rosa_laevigata RLG00000022752
rosa_multiflora Rmu_sc0000831.1_g000016
rosa_roxburghii Rroxscaffold_6G00392160
rosa_rugosa Rorug03G0255300.1
rosa_samantha Rh3AG305600 Rh3BG342000 Rh3CG339400 Rh3DG341300
rosa_wichuraiana Rw3G026900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 2 cut(s) 5, 146
AclI AACGTT 1 cut(s) 524
AclWI GGATC 2 cut(s) 55, 167
AfaI GTAC 2 cut(s) 187, 520
AfiI CCNNNNNNNGG 2 cut(s) 70, 137
AgsI TTSAA 1 cut(s) 352
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 336
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 4 cut(s) 203, 389, 431, 500
AluI AGCT 4 cut(s) 203, 389, 431, 500
Alw21I GWGCWC 3 cut(s) 145, 265, 448
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 55, 167
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 5 cut(s) 222, 341, 386, 389, 428
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspS9I GGNCC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 110
BbsI GAAGAC 2 cut(s) 245, 313
Bbv12I GWGCWC 3 cut(s) 145, 265, 448
BbvI GCAGC 5 cut(s) 234, 353, 376, 398, 440
BceAI ACGGC 1 cut(s) 443
BciT130I CCWGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 2 cut(s) 207, 538
BfmI CTRYAG 2 cut(s) 390, 513
BisI GCNGC 5 cut(s) 223, 342, 387, 390, 429
BlsI GCNGC 5 cut(s) 224, 343, 388, 391, 430
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 112, 129
BmrFI CCNGG 1 cut(s) 338
BpiI GAAGAC 2 cut(s) 245, 313
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 137
Bse1I ACTGG 2 cut(s) 220, 239
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 1 cut(s) 338
BseLI CCNNNNNNNGG 2 cut(s) 70, 137
BseNI ACTGG 2 cut(s) 220, 239
BseRI GAGGAG 2 cut(s) 36, 257
BseXI GCAGC 5 cut(s) 234, 353, 376, 398, 440
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 3 cut(s) 145, 265, 448
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 70, 137
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 407
Bsp1286I GDGCHC 3 cut(s) 145, 265, 448
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 60, 159
BspACI CCGC 2 cut(s) 5, 146
BspANI GGCC 1 cut(s) 407
BspEI TCCGGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 112, 129
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 2 cut(s) 55, 167
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 2 cut(s) 220, 239
BssMI GATC 2 cut(s) 60, 159
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 17, 101
BstKTI GATC 2 cut(s) 63, 162
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 60, 159
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 2 cut(s) 390, 513
BstV1I GCAGC 5 cut(s) 234, 353, 376, 398, 440
BstV2I GAAGAC 2 cut(s) 245, 313
BsuRI GGCC 1 cut(s) 407
BtrI CACGTC 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 142, 213
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 186, 519
CviAII CATG 2 cut(s) 325, 475
CviJI RGCY 6 cut(s) 203, 302, 389, 407, 431, 500
CviKI_1 RGCY 6 cut(s) 203, 302, 389, 407, 431, 500
CviQI GTAC 2 cut(s) 186, 519
DpnI GATC 2 cut(s) 62, 161
DpnII GATC 2 cut(s) 60, 159
Eco47I GGWCC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 336
FaeI CATG 2 cut(s) 328, 478
FaiI YATR 6 cut(s) 326, 425, 434, 436, 476, 497
FatI CATG 2 cut(s) 324, 474
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 223, 342, 387, 390, 429
Fsp4HI GCNGC 5 cut(s) 223, 342, 387, 390, 429
FspBI CTAG 2 cut(s) 207, 538
GluI GCNGC 5 cut(s) 223, 342, 387, 390, 429
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 407
HapII CCGG 1 cut(s) 125
HgaI GACGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 328, 478
HincII GTYRAC 2 cut(s) 28, 97
HindII GTYRAC 2 cut(s) 28, 97
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 4 cut(s) 24, 79, 238, 399
HpaII CCGG 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 28, 97
Hpy188I TCNGA 3 cut(s) 159, 260, 507
Hpy188III TCNNGA 4 cut(s) 125, 163, 197, 207
Hpy8I GTNNAC 2 cut(s) 28, 97
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 38, 418
HpyCH4III ACNGT 2 cut(s) 17, 101
HpyCH4IV ACGT 2 cut(s) 30, 524
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpySE526I ACGT 2 cut(s) 30, 524
Hsp92II CATG 2 cut(s) 328, 478
Kpn2I TCCGGA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 60, 159
LmnI GCTCC 2 cut(s) 148, 443
Lsp1109I GCAGC 5 cut(s) 234, 353, 376, 398, 440
MaeI CTAG 2 cut(s) 207, 538
MaeII ACGT 2 cut(s) 30, 524
MalI GATC 2 cut(s) 62, 161
MboI GATC 2 cut(s) 60, 159
MboII GAAGA 3 cut(s) 245, 313, 403
MhlI GDGCHC 3 cut(s) 145, 265, 448
MluCI AATT 1 cut(s) 483
MlyI GAGTC 3 cut(s) 33, 73, 232
MnlI CCTC 7 cut(s) 14, 28, 43, 64, 178, 278, 389
MroI TCCGGA 1 cut(s) 124
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 2 cut(s) 148, 389
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 2 cut(s) 60, 159
NlaIII CATG 2 cut(s) 328, 478
NlaIV GGNNCC 2 cut(s) 112, 129
NmeAIII GCCGAG 1 cut(s) 202
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 5 cut(s) 224, 343, 388, 391, 430
PleI GAGTC 3 cut(s) 32, 73, 232
PpsI GAGTC 3 cut(s) 32, 73, 232
Psp1406I AACGTT 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 112, 129
PspPI GGNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 187, 520
RsaNI GTAC 2 cut(s) 186, 519
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 5 cut(s) 223, 342, 387, 390, 429
Sau3AI GATC 2 cut(s) 60, 159
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 3 cut(s) 33, 73, 232
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 3 cut(s) 145, 265, 448
SfcI CTRYAG 2 cut(s) 390, 513
SinI GGWCC 1 cut(s) 127
Sse9I AATT 1 cut(s) 483
SsiI CCGC 2 cut(s) 5, 146
SspMI CTAG 2 cut(s) 207, 538
StyD4I CCNGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 17, 101
TaiI ACGT 2 cut(s) 33, 527
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 483
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 142, 220
TseI GCWGC 5 cut(s) 222, 341, 386, 389, 428
TspDTI ATGAA 2 cut(s) 143, 313
TspRI CASTG 2 cut(s) 142, 220
VpaK11BI GGWCC 1 cut(s) 127
XbaI TCTAGA 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 2 cut(s) 207, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.