Prupe.3G163400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014266
Physical Location & Seq
Forward (+)
18283701 .. 18288707
5007 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163400.1

Sequence Viewer

Length: 678 bp
ATGGCGGAGCCGTACGGAACCAACGGCGCAGTCGACGTCGACGTCACCGACGACGGCGAGATCAACACCAAAGCGACCCACCGGGAGGAGACTCTCTTCGGCGTTTTCCACCGTCTGATTGATGCTATTTTCTTCCCCGGCTCCACCAGTGCCGGCACTGCTGCTCCCCTGTTCCGCCGGATAAAAAACTCTCTTGCCGAGAACTGTCCGCTGCTTCGCGAAGCTTCTAGAAACTCTGGGCGGAACGTTCTCCTCTGGACTCGCAGGGGTAGTCCTCTCCGGGCGCTCCTCGTCATCTCTGTTGGCACCATTACTCTTATTTCCTTGACAGGCCTCCTGGTCTTCATGCTTTTCTTCCTGGCAGCAACTCTCAATGCAGTAATCATCTCTCTTCTGTTGTCTTTGGCAGCTGCTGGAGGATTCTTGGCCCTTTTCTTTGCCTGTGTAACAGCTATATATATTGGAGCATTATCAGTAGCTGTTTTTGTCATTTCTGCCACCACAATTTCTGCAATTGCAGCTGTTCTGATAACTACAGGCTGGATTGGATTCTTTTGGATCGTGTGGCTGGCAGCAAAGAAAAGTCTGGGCCTTGCTAAGCAATCATTTAGCGTGACTGGTTCAGCGATTTCAGCTTACTCTTATGGTAGGCATGCTCACAAGTCGTCTTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

23.88

Weight (kDa)

9.51

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16550
fragaria_vesca FvH4_1g28640
malus_domestica MD09G1265200.v1.1 MD17G1261400.v1.1
prunus_persica Prupe.3G163400_v2.0.a1
pyrus_communis pycom09g17900 pycom17g26190
rosa_chinensis RchiOBHm_Chr3g0492651
rosa_laevigata RLG00000022752
rosa_multiflora Rmu_sc0000831.1_g000016
rosa_roxburghii Rroxscaffold_6G00392160
rosa_rugosa Rorug03G0255300.1
rosa_samantha Rh3AG305600 Rh3BG342000 Rh3CG339400 Rh3DG341300
rosa_wichuraiana Rw3G026900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 2 cut(s) 39, 45
AccB1I GGYRCC 1 cut(s) 305
AccI GTMKAC 2 cut(s) 33, 39
AccII CGCG 1 cut(s) 219
AciI CCGC 4 cut(s) 5, 175, 209, 241
AclI AACGTT 1 cut(s) 246
AclWI GGATC 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 2 cut(s) 36, 42
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 85
AjnI CCWGG 2 cut(s) 336, 357
AluBI AGCT 6 cut(s) 224, 410, 452, 479, 521, 635
AluI AGCT 6 cut(s) 224, 410, 452, 479, 521, 635
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 566
AlwNI CAGNNNCTG 2 cut(s) 413, 479
AoxI GGCC 3 cut(s) 331, 426, 589
ApeKI GCWGC 7 cut(s) 161, 211, 362, 407, 410, 518, 572
AspLEI GCGC 2 cut(s) 29, 286
AspS9I GGNCC 2 cut(s) 427, 589
AsuC2I CCSGG 3 cut(s) 83, 138, 281
AsuHPI GGTGA 1 cut(s) 37
BanI GGYRCC 1 cut(s) 305
BbsI GAAGAC 2 cut(s) 334, 660
BbvI GCAGC 7 cut(s) 148, 198, 374, 397, 419, 530, 584
BceAI ACGGC 2 cut(s) 40, 70
BciT130I CCWGG 2 cut(s) 338, 359
BcnI CCSGG 3 cut(s) 83, 138, 281
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 7 cut(s) 162, 212, 363, 408, 411, 519, 573
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 7 cut(s) 163, 213, 364, 409, 412, 520, 574
Bme1390I CCNGG 5 cut(s) 83, 138, 281, 338, 359
BmgT120I GGNCC 2 cut(s) 427, 589
BmiI GGNNCC 4 cut(s) 9, 19, 142, 307
BmrFI CCNGG 5 cut(s) 83, 138, 281, 338, 359
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 2 cut(s) 334, 660
BpmI CTGGAG 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 597
BpuMI CCSGG 3 cut(s) 83, 138, 281
BsaHI GRCGYC 2 cut(s) 36, 42
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 147, 622
BseBI CCWGG 2 cut(s) 338, 359
BseDI CCNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 147, 622
BseRI GAGGAG 3 cut(s) 101, 242, 278
BseXI GCAGC 7 cut(s) 148, 198, 374, 397, 419, 530, 584
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 333, 428, 591
BshNI GGYRCC 1 cut(s) 305
BsiSI CCGG 5 cut(s) 82, 138, 153, 178, 280
BsiWI CGTACG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 3 cut(s) 333, 428, 591
Bsp143I GATC 2 cut(s) 60, 558
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 4 cut(s) 5, 175, 209, 241
BspANI GGCC 3 cut(s) 333, 428, 591
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 4 cut(s) 9, 19, 142, 307
BspPI GGATC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 147, 622
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 60, 558
BssNI GRCGYC 2 cut(s) 36, 42
Bst2UI CCWGG 2 cut(s) 338, 359
Bst4CI ACNGT 2 cut(s) 113, 206
Bst6I CTCTTC 2 cut(s) 101, 396
BstACI GRCGYC 2 cut(s) 36, 42
BstC8I GCNNGC 3 cut(s) 154, 570, 654
BstDEI CTNAG 1 cut(s) 597
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 29, 286
BstKTI GATC 2 cut(s) 63, 561
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 60, 558
BstMWI GCNNNNNNNGC 3 cut(s) 158, 518, 632
BstNI CCWGG 2 cut(s) 338, 359
BstNSI RCATGY 1 cut(s) 656
BstSCI CCNGG 5 cut(s) 81, 136, 279, 336, 357
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 7 cut(s) 148, 198, 374, 397, 419, 530, 584
BstV2I GAAGAC 2 cut(s) 334, 660
BsuRI GGCC 3 cut(s) 333, 428, 591
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 154, 156
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 3 cut(s) 154, 570, 654
CaiI CAGNNNCTG 2 cut(s) 413, 479
CfoI GCGC 2 cut(s) 29, 286
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 427, 589
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 346, 653
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 597
DpnI GATC 2 cut(s) 62, 560
DpnII GATC 2 cut(s) 60, 558
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 101, 396
EarI CTCTTC 2 cut(s) 101, 396
EciI GGCGGA 3 cut(s) 20, 164, 256
Eco147I AGGCCT 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 654
EcoRII CCWGG 2 cut(s) 336, 357
FaeI CATG 2 cut(s) 349, 656
FaiI YATR 6 cut(s) 347, 455, 457, 459, 645, 654
FatI CATG 2 cut(s) 345, 652
FblI GTMKAC 2 cut(s) 33, 39
Fnu4HI GCNGC 7 cut(s) 162, 212, 363, 408, 411, 519, 573
Fsp4HI GCNGC 7 cut(s) 162, 212, 363, 408, 411, 519, 573
FspBI CTAG 1 cut(s) 228
GlaI GCGC 2 cut(s) 28, 285
GluI GCNGC 7 cut(s) 162, 212, 363, 408, 411, 519, 573
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 3 cut(s) 333, 428, 591
HapII CCGG 5 cut(s) 82, 138, 153, 178, 280
HhaI GCGC 2 cut(s) 29, 286
Hin1I GRCGYC 2 cut(s) 36, 42
Hin1II CATG 2 cut(s) 349, 656
Hin6I GCGC 2 cut(s) 27, 284
HinP1I GCGC 2 cut(s) 27, 284
HincII GTYRAC 2 cut(s) 34, 40
HindII GTYRAC 2 cut(s) 34, 40
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 4 cut(s) 91, 259, 420, 549
HpaII CCGG 5 cut(s) 82, 138, 153, 178, 280
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 34, 40
Hpy188I TCNGA 3 cut(s) 117, 528, 673
Hpy188III TCNNGA 3 cut(s) 218, 228, 256
Hpy8I GTNNAC 2 cut(s) 34, 40
Hpy99I CGWCG 5 cut(s) 38, 41, 44, 53, 56
HpyCH4III ACNGT 2 cut(s) 113, 206
HpyCH4IV ACGT 3 cut(s) 36, 42, 246
HpyCH4V TGCA 3 cut(s) 377, 512, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 518, 632
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 3 cut(s) 36, 42, 246
Hsp92I GRCGYC 2 cut(s) 36, 42
Hsp92II CATG 2 cut(s) 349, 656
HspAI GCGC 2 cut(s) 27, 284
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 60, 558
LmnI GCTCC 5 cut(s) 7, 146, 169, 291, 464
Lsp1109I GCAGC 7 cut(s) 148, 198, 374, 397, 419, 530, 584
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 228
MaeII ACGT 3 cut(s) 36, 42, 246
MaeIII GTNAC 3 cut(s) 43, 445, 613
MalI GATC 2 cut(s) 62, 560
MboI GATC 2 cut(s) 60, 558
MboII GAAGA 6 cut(s) 88, 124, 334, 346, 383, 660
MfeI CAATTG 1 cut(s) 513
MluCI AATT 2 cut(s) 504, 513
MlyI GAGTC 2 cut(s) 85, 253
MnlI CCTC 6 cut(s) 79, 263, 285, 299, 344, 410
MroNI GCCGGC 1 cut(s) 152
MspA1I CMGCKG 3 cut(s) 211, 410, 521
MspI CCGG 5 cut(s) 82, 138, 153, 178, 280
MspR9I CCNGG 5 cut(s) 83, 138, 281, 338, 359
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 2 cut(s) 338, 359
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 158, 518, 632
NaeI GCCGGC 1 cut(s) 154
NciI CCSGG 3 cut(s) 83, 138, 281
NdeII GATC 2 cut(s) 60, 558
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 349, 656
NlaIV GGNNCC 4 cut(s) 9, 19, 142, 307
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 43, 613
NruI TCGCGA 1 cut(s) 219
NspI RCATGY 1 cut(s) 656
PaeI GCATGC 1 cut(s) 656
PceI AGGCCT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 39, 45, 48
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 420, 549
Pfl23II CGTACG 1 cut(s) 12
PkrI GCNGC 7 cut(s) 163, 213, 364, 409, 412, 520, 574
PleI GAGTC 2 cut(s) 85, 253
PpsI GAGTC 2 cut(s) 85, 253
Psp1406I AACGTT 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 336, 357
PspGI CCWGG 2 cut(s) 336, 357
PspLI CGTACG 1 cut(s) 12
PspN4I GGNNCC 4 cut(s) 9, 19, 142, 307
PspPI GGNCC 2 cut(s) 427, 589
PstNI CAGNNNCTG 2 cut(s) 413, 479
PvuII CAGCTG 2 cut(s) 410, 521
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SalI GTCGAC 2 cut(s) 32, 38
SatI GCNGC 7 cut(s) 162, 212, 363, 408, 411, 519, 573
Sau3AI GATC 2 cut(s) 60, 558
Sau96I GGNCC 2 cut(s) 427, 589
SchI GAGTC 2 cut(s) 85, 253
ScrFI CCNGG 5 cut(s) 83, 138, 281, 338, 359
SetI ASST 9 cut(s) 39, 45, 226, 249, 412, 454, 481, 523, 637
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 534
SgrDI CGTCGACG 1 cut(s) 38
SphI GCATGC 1 cut(s) 656
Sse9I AATT 2 cut(s) 504, 513
SseBI AGGCCT 1 cut(s) 333
SsiI CCGC 4 cut(s) 5, 175, 209, 241
SspMI CTAG 1 cut(s) 228
StuI AGGCCT 1 cut(s) 333
StyD4I CCNGG 5 cut(s) 81, 136, 279, 336, 357
TaaI ACNGT 2 cut(s) 113, 206
TaiI ACGT 3 cut(s) 39, 45, 249
TaqI TCGA 2 cut(s) 33, 39
TasI AATT 2 cut(s) 504, 513
TfiI GAWTC 2 cut(s) 420, 549
TscAI CASTG 2 cut(s) 154, 163
TseFI GTSAC 2 cut(s) 43, 613
TseI GCWGC 7 cut(s) 161, 211, 362, 407, 410, 518, 572
Tsp45I GTSAC 2 cut(s) 43, 613
TspDTI ATGAA 1 cut(s) 334
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 154, 163
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 656
XmiI GTMKAC 2 cut(s) 33, 39
XspI CTAG 1 cut(s) 228
ZraI GACGTC 2 cut(s) 37, 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.