Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004108

Physical Location & Seq

Genomic Coordinates Reverse (-)

5571550 .. 5572405

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAATCAGAGTTAATATTTCATGAAGGTGGATGTCATTGTGGGAAAATCAAATGGAGAGTTAAAGCAGCAAGAAGTGTGATTGCTTGGAGCTGCAACTGCTCAGATTGTTCAATGAGAGGCAATGTTCACTTTATTGTTCCTTCAAGCAACTTTGAGCTTCTTGATGACTCAAAGGACTTCATTACTACTTACACTTTTGGGACTCACACGGCCAAACATACCTTCTGCAAGGTTTGTGGGATCACATCGTTTTATATCCCGAGGTCTAACCCTGATGGAGTCGCTGTCACAGTTAAGTGTGTCAAGTCGGGGACACTGGCTCACATCGAGGTCAAAAGCTATGATGGTCAGAACTGGGAAATGTCGCACAAAAAGACTGGTATTGCCTCGTTTTCCAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0001667 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005819 GO:0005856 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006928 GO:0006996 GO:0008150 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016477 GO:0022607 GO:0031055 GO:0031497 GO:0031507 GO:0031508 GO:0032465 GO:0032467 GO:0032991 GO:0033043 GO:0033044 GO:0034508 GO:0034622 GO:0040011 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0045787 GO:0048518 GO:0048522 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051233 GO:0051276 GO:0051302 GO:0051674 GO:0051726 GO:0051781 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071824 GO:0071840 GO:0090068 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFA

Protein Analysis

135

Amino Acids

15.02

Weight (kDa)

8.42

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFA	PF04828	9 - 104	7.1e-11	Glutathione-dependent formaldehyde-activating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16940 AT5G16940
fragaria_vesca	FvH4_1g30100 FvH4_1g30100 FvH4_1g30100
malus_domestica	MD09G1269100.v1.1 MD09G1269600.v1.1 MD09G1269800.v1.1 MD17G1267500.v1.1 MD17G1267700.v1.1
prunus_persica	Prupe.3G165600_v2.0.a1 Prupe.3G165600_v2.0.a1
pyrus_communis	pycom09g18100
rosa_chinensis	RchiOBHm_Chr3g0491661 RchiOBHm_Chr3g0491691 RchiOBHm_Chr3g0491731 RchiOBHm_Chr3g0491901
rosa_laevigata	RLG00000022814 RLG00000022830
rosa_multiflora	Rmu_sc0003786.1_g000006 Rmu_sc0009763.1_g000004 Rmu_sc0033062.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392720
rosa_rugosa	Rorug03G0250800
rosa_samantha	Rh3AG299600 Rh3AG300400 Rh3BG336400 Rh3CG332600 Rh3CG333600 Rh3DG334400 Rh3DG335600
rosa_wichuraiana	Rw3G026480 Rw3G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	114, 147
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	3 cut(s)	93, 160, 342
AluI	AGCT	3 cut(s)	93, 160, 342
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	68, 93
AvaI	CYCGRG	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	80, 80
BccI	CCATC	2 cut(s)	272, 341
BceAI	ACGGC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	69, 94
BlsI	GCNGC	2 cut(s)	70, 95
BmeT110I	CYCGRG	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	263, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse1I	ACTGG	3 cut(s)	324, 362, 385
Bse3DI	GCAATG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	263, 399
BseGI	GGATG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	3 cut(s)	324, 362, 385
BseXI	GCAGC	2 cut(s)	80, 80
BshFI	GGCC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	262
BslFI	GGGAC	2 cut(s)	217, 328
BsmFI	GGGAC	2 cut(s)	217, 328
BsnI	GGCC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	22
BspPI	GGATC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	324, 362, 385
BssECI	CCNNGG	2 cut(s)	263, 399
BssMI	GATC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	80, 80
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	317
CciI	TCATGA	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	5 cut(s)	93, 160, 215, 323, 342
CviKI_1	RGCY	5 cut(s)	93, 160, 215, 323, 342
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	1 cut(s)	26
FaiI	YATR	4 cut(s)	24, 222, 258, 345
FaqI	GGGAC	2 cut(s)	217, 328
FatI	CATG	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	69, 94
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	69, 94
GluI	GCNGC	2 cut(s)	69, 94
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	26
HinfI	GANTC	4 cut(s)	5, 170, 205, 282
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	10, 106, 354
Hpy188III	TCNNGA	3 cut(s)	23, 164, 262
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	20, 153, 235
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	96, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	4 cut(s)	288, 305, 343, 366
Lsp1109I	GCAGC	2 cut(s)	80, 80
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MlyI	GAGTC	3 cut(s)	164, 199, 291
MnlI	CCTC	4 cut(s)	113, 258, 325, 400
MseI	TTAA	3 cut(s)	14, 63, 297
MslI	CAYNNNNRTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	289
PagI	TCATGA	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	70, 95
PleI	GAGTC	3 cut(s)	164, 199, 290
PpsI	GAGTC	3 cut(s)	164, 199, 290
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	14, 63, 297
SatI	GCNGC	2 cut(s)	69, 94
Sau3AI	GATC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	164, 199, 291
SetI	ASST	8 cut(s)	31, 95, 162, 227, 237, 269, 336, 344
SmiMI	CAYNNNNRTG	1 cut(s)	27
SspI	AATATT	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	14, 63, 297
Tru9I	TTAA	3 cut(s)	14, 63, 297
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	68, 93
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	11, 39, 172
TspRI	CASTG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.