Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009763.1

Orthogroup ID

OG0004108

Physical Location & Seq

Genomic Coordinates Forward (+)

25734 .. 26141

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009763.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgacagtacatgatggtgggtgccactgcaagaatgtaagatggcgagtgcaagcgcctactaaggttgtggcttggagttgcaactgttcgatttgctctatgaggggtaacacgaatttcgttgtcccttctgaaagatttgaactcttgggtaattctgaacagtttctcacaacttatagctttggttctcacacagcaaagcatactttctgtaaggtctgtgggataacttcgttttattatccacgctcaaaccctgatggggttgccatcatatatgggtgtgttgatcctggaacactaacctatgatgaggtcaagtattttgatggccaaaattgggaaaactcctacaaccagtcgaacattgcttcgcagtcaaaggtagactctggaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0001667 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005819 GO:0005856 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006928 GO:0006996 GO:0008150 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016477 GO:0022607 GO:0031055 GO:0031497 GO:0031507 GO:0031508 GO:0032465 GO:0032467 GO:0032991 GO:0033043 GO:0033044 GO:0034508 GO:0034622 GO:0040011 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0045787 GO:0048518 GO:0048522 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051233 GO:0051276 GO:0051302 GO:0051674 GO:0051726 GO:0051781 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071824 GO:0071840 GO:0090068 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFA

Protein Analysis

135

Amino Acids

15.07

Weight (kDa)

6.86

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16940 AT5G16940
fragaria_vesca	FvH4_1g30100 FvH4_1g30100 FvH4_1g30100
malus_domestica	MD09G1269100.v1.1 MD09G1269600.v1.1 MD09G1269800.v1.1 MD17G1267500.v1.1 MD17G1267700.v1.1
prunus_persica	Prupe.3G165600_v2.0.a1 Prupe.3G165600_v2.0.a1
pyrus_communis	pycom09g18100
rosa_chinensis	RchiOBHm_Chr3g0491661 RchiOBHm_Chr3g0491691 RchiOBHm_Chr3g0491731 RchiOBHm_Chr3g0491901
rosa_laevigata	RLG00000022814 RLG00000022830
rosa_multiflora	Rmu_sc0003786.1_g000006 Rmu_sc0009763.1_g000004 Rmu_sc0033062.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392720
rosa_rugosa	Rorug03G0250800
rosa_samantha	Rh3AG299600 Rh3AG300400 Rh3BG336400 Rh3CG332600 Rh3CG333600 Rh3DG334400 Rh3DG335600
rosa_wichuraiana	Rw3G026480 Rw3G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	393
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	268, 346
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	21
BccI	CCATC	5 cut(s)	8, 36, 260, 284, 329
BciT130I	CCWGG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 346
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	268, 346
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	268, 346
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	7, 89, 168
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	3 cut(s)	74, 186, 339
CviKI_1	RGCY	3 cut(s)	74, 186, 339
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	14
FaiI	YATR	8 cut(s)	12, 104, 183, 210, 281, 283, 285, 315
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	393
GlaI	GCGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	136, 163
Hpy188III	TCNNGA	1 cut(s)	399
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	3 cut(s)	7, 89, 168
HpyCH4V	TGCA	3 cut(s)	30, 52, 84
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	276, 285, 312, 377, 384
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	3 cut(s)	118, 157, 343
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	2 cut(s)	99, 313
Mox20I	TGGCCA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	298
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	6 cut(s)	69, 188, 225, 314, 324, 393
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	3 cut(s)	118, 157, 343
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	7, 89, 168
TaqI	TCGA	2 cut(s)	92, 368
TasI	AATT	3 cut(s)	118, 157, 343
TatI	WGTACW	1 cut(s)	7
TscAI	CASTG	1 cut(s)	32
TspRI	CASTG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.