Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004108

Physical Location & Seq

Genomic Coordinates Forward (+)

36484604 .. 36500425

Gene Structure 15822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGCATGGAGTCTGAGATGACAGTACATGATGGTGGGTGCCACTGCAAGAATGTAAGATGGCGAGTGCAAGCGCCTACTAAGGTTGTGGCTTGGAGTTGCAACTGTTCAAATTGCTCTATGAGGGGTAACACGAATTTCATTGTCCCTTCTGAAAGATTTGAACTCTTGGGTAATTCTGAACAGTTTCTCACAACTTATAGCTTTGGTTCTCACACGGCAAAGCATACTTTCTGTAAGGTCTGTGGGATAACTTCGTTTTATTATCCACGCTCAAACCCTGATGGGGTTGCCATCATATATGGGTGTGTTGATCCTGGAACACTAACCTATGATGAGGTCAAGTATTTTGATGGCCAAAATTGGGAAAACTCCTACAACCAGTCGAACATTGCTTCGCAGTCAAAGGTAGACTCTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0001667 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005819 GO:0005856 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006928 GO:0006996 GO:0008150 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016477 GO:0022607 GO:0031055 GO:0031497 GO:0031507 GO:0031508 GO:0032465 GO:0032467 GO:0032991 GO:0033043 GO:0033044 GO:0034508 GO:0034622 GO:0040011 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0045787 GO:0048518 GO:0048522 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051233 GO:0051276 GO:0051302 GO:0051674 GO:0051726 GO:0051781 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071824 GO:0071840 GO:0090068 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFA

Protein Analysis

141

Amino Acids

15.78

Weight (kDa)

6.04

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GFA	PF04828	10 - 107	6.5e-14	Glutathione-dependent formaldehyde-activating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16940 AT5G16940
fragaria_vesca	FvH4_1g30100 FvH4_1g30100 FvH4_1g30100
malus_domestica	MD09G1269100.v1.1 MD09G1269600.v1.1 MD09G1269800.v1.1 MD17G1267500.v1.1 MD17G1267700.v1.1
prunus_persica	Prupe.3G165600_v2.0.a1 Prupe.3G165600_v2.0.a1
pyrus_communis	pycom09g18100
rosa_chinensis	RchiOBHm_Chr3g0491661 RchiOBHm_Chr3g0491691 RchiOBHm_Chr3g0491731 RchiOBHm_Chr3g0491901
rosa_laevigata	RLG00000022814 RLG00000022830
rosa_multiflora	Rmu_sc0003786.1_g000006 Rmu_sc0009763.1_g000004 Rmu_sc0033062.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392720
rosa_rugosa	Rorug03G0250800
rosa_samantha	Rh3AG299600 Rh3AG300400 Rh3BG336400 Rh3CG332600 Rh3CG333600 Rh3DG334400 Rh3DG335600
rosa_wichuraiana	Rw3G026480 Rw3G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	411
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	286, 364
AgsI	TTSAA	2 cut(s)	111, 164
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	39
BccI	CCATC	5 cut(s)	26, 54, 278, 302, 347
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 364
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	286, 364
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	286, 364
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	25, 107, 186
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	15, 81
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	7, 29
CviJI	RGCY	3 cut(s)	92, 204, 357
CviKI_1	RGCY	3 cut(s)	92, 204, 357
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	15, 81
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	10, 32
FaiI	YATR	9 cut(s)	8, 30, 122, 201, 228, 299, 301, 303, 333
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	6, 28
FblI	GTMKAC	1 cut(s)	411
GlaI	GCGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	10, 32
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	11, 413
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	16, 154, 181
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	3 cut(s)	25, 107, 186
HpyCH4V	TGCA	3 cut(s)	48, 70, 102
HpyF3I	CTNAG	2 cut(s)	15, 81
Hsp92II	CATG	2 cut(s)	10, 32
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	313
LpnPI	CCDG	5 cut(s)	294, 303, 330, 395, 402
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	4 cut(s)	112, 136, 175, 361
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	20, 407
MnlI	CCTC	2 cut(s)	117, 331
Mox20I	TGGCCA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	10, 32
NlaIV	GGNNCC	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	316
PleI	GAGTC	2 cut(s)	19, 407
PpsI	GAGTC	2 cut(s)	19, 407
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	20, 407
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	6 cut(s)	87, 206, 243, 332, 342, 411
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	4 cut(s)	112, 136, 175, 361
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	25, 107, 186
TaqI	TCGA	1 cut(s)	386
TasI	AATT	4 cut(s)	112, 136, 175, 361
TatI	WGTACW	1 cut(s)	25
TscAI	CASTG	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.