Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004108

Physical Location & Seq

Genomic Coordinates Reverse (-)

34342846 .. 34343377

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1269100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTTATTAAGCGCCTAGCAGTGTTGTGGCTTGGAGTTGCAACTGCTCGAATTGCTCTGAGGGGTAACACCCATTTCATTGTCCCTGCTGAAAGATTTCAACTTTTGAGTGATTCTGAGCAGATTCTTACAACTTCTAGCTTCGGTACTCATACGGCAAAGCACACATTCTGTAAAGTTTGTGGGATAACTTCGTTCTATCGTCCATGCTCAAACGCTGATGGGGTCACCATCACATTTAGGTGTGTTGATCCTGGAACACTGGCCCACATTGAGATTAAGTATTACGAAGGGCAAAATTGGGAAGCCTTGCACAGTCAATCAGGCATTGCGTTGCAGTCAAAAGTGCAGACTCTCCAAAATATAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0001667 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005819 GO:0005856 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006928 GO:0006996 GO:0008150 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016477 GO:0022607 GO:0031055 GO:0031497 GO:0031507 GO:0031508 GO:0032465 GO:0032467 GO:0032991 GO:0033043 GO:0033044 GO:0034508 GO:0034622 GO:0040011 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0045787 GO:0048518 GO:0048522 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051233 GO:0051276 GO:0051302 GO:0051674 GO:0051726 GO:0051781 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071824 GO:0071840 GO:0090068 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFA

Protein Analysis

124

Amino Acids

13.6

Weight (kDa)

8.8

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16940 AT5G16940
fragaria_vesca	FvH4_1g30100 FvH4_1g30100 FvH4_1g30100
malus_domestica	MD09G1269100.v1.1 MD09G1269600.v1.1 MD09G1269800.v1.1 MD17G1267500.v1.1 MD17G1267700.v1.1
prunus_persica	Prupe.3G165600_v2.0.a1 Prupe.3G165600_v2.0.a1
pyrus_communis	pycom09g18100
rosa_chinensis	RchiOBHm_Chr3g0491661 RchiOBHm_Chr3g0491691 RchiOBHm_Chr3g0491731 RchiOBHm_Chr3g0491901
rosa_laevigata	RLG00000022814 RLG00000022830
rosa_multiflora	Rmu_sc0003786.1_g000006 Rmu_sc0009763.1_g000004 Rmu_sc0033062.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392720
rosa_rugosa	Rorug03G0250800
rosa_samantha	Rh3AG299600 Rh3AG300400 Rh3BG336400 Rh3CG332600 Rh3CG333600 Rh3DG334400 Rh3DG335600
rosa_wichuraiana	Rw3G026480 Rw3G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	220
BccI	CCATC	2 cut(s)	215, 239
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	2 cut(s)	17, 138
BfoI	RGCGCY	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	50, 108
BseNI	ACTGG	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	51, 109
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	59, 117
BstEII	GGTNACC	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	255
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 260
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	4 cut(s)	31, 141, 266, 308
CviKI_1	RGCY	4 cut(s)	31, 141, 266, 308
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	59, 117
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	210
FaiI	YATR	3 cut(s)	153, 208, 365
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	206
FspBI	CTAG	2 cut(s)	17, 138
GlaI	GCGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	113, 124, 352
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	60, 118
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	41, 313, 337, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	59, 117
Hsp92II	CATG	1 cut(s)	210
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	99, 240, 248, 267, 309
MaeI	CTAG	2 cut(s)	17, 138
MaeIII	GTNAC	2 cut(s)	65, 226
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MluCI	AATT	2 cut(s)	51, 298
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	3 cut(s)	9, 279, 370
MslI	CAYNNNNRTG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	113, 124
PfoI	TCCNGGA	1 cut(s)	253
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	9, 279, 370
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	3 cut(s)	143, 245, 370
SmiMI	CAYNNNNRTG	1 cut(s)	241
Sse9I	AATT	2 cut(s)	51, 298
SspMI	CTAG	2 cut(s)	17, 138
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	51, 298
TfiI	GAWTC	2 cut(s)	113, 124
Tru1I	TTAA	3 cut(s)	9, 279, 370
Tru9I	TTAA	3 cut(s)	9, 279, 370
TscAI	CASTG	2 cut(s)	27, 267
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	27, 267
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	17, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.