Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004108

Physical Location & Seq

Genomic Coordinates Forward (+)

23641930 .. 23644802

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGAAAGAGAAAGAGAGCTAGGGTTTCTGAGCAAAAGCAAGCACCAGAAGCCGGAGAAGACGAACAGCCAATGGACGAAGATCACAACGCCTCCTCTTCAAGTAACAACAAGACTCTCTACGAGGTTCTTGGTGTGGAGAGAAGCGCCTCTCAGCAGGAAATCAAGAAGGCGTATTATAAGTTAGCATTGCGACTCCATCCGGATAAAAATCCTGATGATGAGGAAGCTAAAGAGAAATTTCAGCAATTACAAAAAGTGATCTCGATTCTCGGGGATGAGGAGAAACGAGCACTGTATGACCAGACTGGTTGCGTTGACGATCATGACCTTGCTGGTGATGTTGCTCAGAATTTGCACGAATATTTCCGAGCCATGTATAAGAAGGTCACTGAAGCTGACATTGAAGAGTTTGAAGCAAACTATAGGGGATCTGATTCTGAGAAGAAAGATTTGATTGAGCTCTACAGCAAGTACAAGGGCAATATGAACAGACTCTTCTGTTCAATGCTTTGTTCAGATCCTAAGCTTGATTCACACCGCTTTAAGGACATTCTTGATGAGGCAATAGCTTCAGGAGAACTGAAATCAACCAAAGCCTACACAAAATGGGCAAAGAAAGTATCTGAAACAAAACCTCCTACTAGTCCTTTAAAGAGGAAGAGCAAGTCAAGTAAACAGTCAGAACCAGATCTGTATGCCATCATATCTCAGCGTAGGAATGAAAGGAAAGACCAGTTTGAGTCTATGTTCTCTAACCTAGTCTCTAAGTATGGCGGGAGTAATGATGCTTCAGAACCCACAGAAGAAGAATTTGAGGCTACACAGAAAAAGCTTGAAAGCAAAAGGTCCTCCAGAAAATCAAAGCGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0001667 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005819 GO:0005856 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006928 GO:0006996 GO:0008150 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016477 GO:0022607 GO:0031055 GO:0031497 GO:0031507 GO:0031508 GO:0032465 GO:0032467 GO:0032991 GO:0033043 GO:0033044 GO:0034508 GO:0034622 GO:0040011 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0045787 GO:0048518 GO:0048522 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051233 GO:0051276 GO:0051302 GO:0051674 GO:0051726 GO:0051781 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071824 GO:0071840 GO:0090068 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GFA

Protein Analysis

291

Amino Acids

33.43

Weight (kDa)

7.62

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	40 - 101	2.5e-26	DnaJ domain
HTH_DNAJC9	PF23302	142 - 210	5.6e-27	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16940 AT5G16940
fragaria_vesca	FvH4_1g30100 FvH4_1g30100 FvH4_1g30100
malus_domestica	MD09G1269100.v1.1 MD09G1269600.v1.1 MD09G1269800.v1.1 MD17G1267500.v1.1 MD17G1267700.v1.1
prunus_persica	Prupe.3G165600_v2.0.a1 Prupe.3G165600_v2.0.a1
pyrus_communis	pycom09g18100
rosa_chinensis	RchiOBHm_Chr3g0491661 RchiOBHm_Chr3g0491691 RchiOBHm_Chr3g0491731 RchiOBHm_Chr3g0491901
rosa_laevigata	RLG00000022814 RLG00000022830
rosa_multiflora	Rmu_sc0003786.1_g000006 Rmu_sc0009763.1_g000004 Rmu_sc0033062.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392720
rosa_rugosa	Rorug03G0250800
rosa_samantha	Rh3AG299600 Rh3AG300400 Rh3BG336400 Rh3CG332600 Rh3CG333600 Rh3DG334400 Rh3DG335600
rosa_wichuraiana	Rw3G026480 Rw3G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	2 cut(s)	541, 777
AclWI	GGATC	2 cut(s)	439, 515
AcsI	RAATTY	3 cut(s)	239, 352, 812
AcuI	CTGAAG	3 cut(s)	414, 558, 777
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	53, 547
AgsI	TTSAA	5 cut(s)	102, 407, 416, 507, 839
AhlI	ACTAGT	1 cut(s)	644
AluBI	AGCT	7 cut(s)	20, 230, 398, 463, 529, 572, 835
AluI	AGCT	7 cut(s)	20, 230, 398, 463, 529, 572, 835
Alw21I	GWGCWC	2 cut(s)	295, 465
Alw26I	GTCTC	1 cut(s)	769
AlwI	GGATC	2 cut(s)	439, 515
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	202
ApoI	RAATTY	3 cut(s)	239, 352, 812
AspLEI	GCGC	2 cut(s)	149, 870
AspS9I	GGNCC	1 cut(s)	849
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	849
BanII	GRGCYC	1 cut(s)	465
BarI	GAAGNNNNNNTAC	2 cut(s)	775, 807
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	295, 465
BccI	CCATC	2 cut(s)	207, 710
BcoDI	GTCTC	1 cut(s)	769
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	3 cut(s)	21, 645, 761
BfmI	CTRYAG	2 cut(s)	424, 466
BfoI	RGCGCY	1 cut(s)	150
BglII	AGATCT	1 cut(s)	691
Bme18I	GGWCC	1 cut(s)	849
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	849
BmsI	GCATC	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	838
Bpu10I	CCTNAGC	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 547
Bse1I	ACTGG	2 cut(s)	313, 736
Bse3DI	GCAATG	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	202
BseGI	GGATG	2 cut(s)	199, 283
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	53, 547
BseMI	GCAATG	1 cut(s)	188
BseMII	CTCAG	5 cut(s)	21, 167, 362, 432, 725
BseNI	ACTGG	2 cut(s)	313, 736
BseRI	GAGGAG	2 cut(s)	85, 296
BsiHKAI	GWGCWC	2 cut(s)	295, 465
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	54, 203
BslI	CCNNNNNNNGG	2 cut(s)	53, 547
BsmAI	GTCTC	1 cut(s)	769
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	295, 465
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
BspACI	CCGC	2 cut(s)	541, 777
BspCNI	CTCAG	5 cut(s)	22, 166, 361, 433, 724
BspEI	TCCGGA	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	325
BspPI	GGATC	2 cut(s)	439, 515
BspQI	GCTCTTC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	313, 736
BssMI	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
Bst4CI	ACNGT	2 cut(s)	297, 681
Bst6I	CTCTTC	4 cut(s)	103, 402, 503, 656
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	7 cut(s)	30, 153, 348, 441, 525, 711, 768
BstF5I	GGATG	2 cut(s)	199, 283
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 870
BstKTI	GATC	6 cut(s)	85, 264, 325, 434, 523, 694
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	424, 466
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	431, 520, 691
BstYI	RGATCY	3 cut(s)	431, 520, 691
BtsCI	GGATG	2 cut(s)	199, 283
BtsIMutI	CAGTG	2 cut(s)	293, 390
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	2 cut(s)	149, 870
Cfr13I	GGNCC	1 cut(s)	849
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	326, 376
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	7 cut(s)	30, 153, 348, 441, 525, 711, 768
DpnI	GATC	6 cut(s)	84, 263, 324, 433, 522, 693
DpnII	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
DraI	TTTAAA	1 cut(s)	654
Eam1104I	CTCTTC	4 cut(s)	103, 402, 503, 656
EarI	CTCTTC	4 cut(s)	103, 402, 503, 656
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	849
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	3 cut(s)	414, 558, 777
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	2 cut(s)	329, 379
FatI	CATG	2 cut(s)	325, 375
FauI	CCCGC	1 cut(s)	770
FokI	GGATG	2 cut(s)	186, 290
FriOI	GRGCYC	1 cut(s)	465
FspBI	CTAG	3 cut(s)	21, 645, 761
GlaI	GCGC	2 cut(s)	148, 869
GsuI	CTGGAG	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	150
HapII	CCGG	2 cut(s)	54, 203
HhaI	GCGC	2 cut(s)	149, 870
Hin1II	CATG	2 cut(s)	329, 379
Hin6I	GCGC	2 cut(s)	147, 868
HinP1I	GCGC	2 cut(s)	147, 868
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	527, 833
HinfI	GANTC	7 cut(s)	115, 195, 268, 437, 495, 533, 743
HpaII	CCGG	2 cut(s)	54, 203
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	319, 677
Hpy188I	TCNGA	9 cut(s)	31, 351, 371, 436, 442, 520, 628, 685, 796
Hpy188III	TCNNGA	8 cut(s)	166, 203, 215, 265, 326, 557, 576, 855
Hpy8I	GTNNAC	2 cut(s)	319, 677
HpyAV	CCTTC	2 cut(s)	163, 379
HpyCH4III	ACNGT	2 cut(s)	297, 681
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	7 cut(s)	30, 153, 348, 441, 525, 711, 768
Hsp92II	CATG	2 cut(s)	329, 379
HspAI	GCGC	2 cut(s)	147, 868
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
LguI	GCTCTTC	1 cut(s)	656
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	3 cut(s)	21, 645, 761
MaeIII	GTNAC	2 cut(s)	104, 388
MalI	GATC	6 cut(s)	84, 263, 324, 433, 522, 693
MboI	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
MboII	GAAGA	9 cut(s)	71, 90, 92, 419, 457, 490, 673, 818, 821
MflI	RGATCY	3 cut(s)	431, 520, 691
MhlI	GDGCHC	2 cut(s)	295, 465
MluCI	AATT	4 cut(s)	239, 248, 352, 812
MlyI	GAGTC	4 cut(s)	109, 189, 489, 752
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	2 cut(s)	546, 653
MspI	CCGG	2 cut(s)	54, 203
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
NlaIII	CATG	2 cut(s)	329, 379
NmuCI	GTSAC	1 cut(s)	388
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	268, 437, 533
PleI	GAGTC	4 cut(s)	109, 189, 489, 751
PpsI	GAGTC	4 cut(s)	109, 189, 489, 751
PpuMI	RGGWCCY	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	849
PspPPI	RGGWCCY	1 cut(s)	849
PsuI	RGATCY	3 cut(s)	431, 520, 691
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	656
SaqAI	TTAA	2 cut(s)	546, 653
Sau3AI	GATC	6 cut(s)	82, 261, 322, 431, 520, 691
Sau96I	GGNCC	1 cut(s)	849
SchI	GAGTC	4 cut(s)	109, 189, 489, 752
SduI	GDGCHC	2 cut(s)	295, 465
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	2 cut(s)	424, 466
SinI	GGWCC	1 cut(s)	849
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	4 cut(s)	239, 248, 352, 812
SsiI	CCGC	2 cut(s)	541, 777
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	3 cut(s)	21, 645, 761
SstI	GAGCTC	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	297, 681
TaqI	TCGA	1 cut(s)	266
TasI	AATT	4 cut(s)	239, 248, 352, 812
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	3 cut(s)	268, 437, 533
Tru1I	TTAA	2 cut(s)	546, 653
Tru9I	TTAA	2 cut(s)	546, 653
TscAI	CASTG	2 cut(s)	300, 397
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	503, 738
TspRI	CASTG	2 cut(s)	300, 397
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	3 cut(s)	239, 352, 812
XspI	CTAG	3 cut(s)	21, 645, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.