AT5G17060
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009939
Physical Location & Seq
Forward (+)
5610741 .. 5613074
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17060.2

Sequence Viewer

Length: 579 bp
ATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTCGGCAATCAAGAAATGAGGGTCGTTATGCTGGGGCTGGATGCTGCTGGAAAAACAACTATTCTCTACAAGCTTCATATTGGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTCAATGTTGAGAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTTTGGAGGCATTACTTCAATAATACTGATGGACTTATATACGTGGTGGATTCCTTAGATCGAGAGAGGATCGGGAAAGCAAAGCAAGAATTTCAGGAGATCATAAAAGACCCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCCATGTCACCGAGAGAAGTATGTGAAGGGTTAGGCTTATTTGATCTCAAGAACAGGAAATGGCACATACAAGGTACTTGTGCTCTTCGTGGAGACGGGCTTTATGAAGGCTTGGACTGGTTATCATCTACTCTTAAGGATGTTAAAGCCGCTGGATTCACATCGGTTGGCCACTCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

192

Amino Acids

21.83

Weight (kDa)

8.49

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 6 - 176 8.3e-72 ADP-ribosylation factor family
SRPRB PF09439 17 - 140 3.4e-10 Signal recognition particle receptor beta subunit
Roc PF08477 19 - 129 2.9e-13 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 19 - 132 4e-11 Ras family
Gtr1_RagA PF04670 20 - 129 8.9e-09 Gtr1/RagA G protein conserved region
G-alpha PF00503 44 - 130 1e-10 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 131
AciI CCGC 1 cut(s) 546
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 2 cut(s) 208, 565
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 2 cut(s) 173, 472
AfiI CCNNNNNNNGG 1 cut(s) 146
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 2 cut(s) 154, 247
AluBI AGCT 3 cut(s) 11, 22, 109
AluI AGCT 3 cut(s) 11, 22, 109
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 217, 483
AlwI GGATC 1 cut(s) 305
AoxI GGCC 2 cut(s) 208, 565
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 396
BalI TGGCCA 2 cut(s) 210, 567
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 217, 483
BfrI CTTAAG 1 cut(s) 530
BisI GCNGC 2 cut(s) 81, 546
BlsI GCNGC 2 cut(s) 82, 547
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 556
BsaI GGTCTC 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 518
Bse8I GATNNNNATC 1 cut(s) 556
BseGI GGATG 3 cut(s) 82, 205, 541
BseJI GATNNNNATC 1 cut(s) 556
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 67
BshFI GGCC 2 cut(s) 210, 567
BsiHKAI GWGCWC 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 217, 483
BsmBI CGTCTC 1 cut(s) 483
BsnI GGCC 2 cut(s) 210, 567
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 4 cut(s) 286, 297, 327, 439
BspACI CCGC 1 cut(s) 546
BspANI GGCC 2 cut(s) 210, 567
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 1 cut(s) 305
BspQI GCTCTTC 1 cut(s) 486
BspTI CTTAAG 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 518
BssMI GATC 4 cut(s) 286, 297, 327, 439
Bst4CI ACNGT 3 cut(s) 136, 193, 356
Bst6I CTCTTC 1 cut(s) 486
BstAFI CTTAAG 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 221, 283
BstF5I GGATG 3 cut(s) 82, 205, 541
BstKTI GATC 4 cut(s) 289, 300, 330, 442
BstMAI GTCTC 2 cut(s) 217, 483
BstMBI GATC 4 cut(s) 286, 297, 327, 439
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 210, 567
BtsCI GGATG 3 cut(s) 82, 205, 541
Csp6I GTAC 2 cut(s) 172, 471
CviAII CATG 3 cut(s) 346, 388, 400
CviQI GTAC 2 cut(s) 172, 471
DdeI CTNAG 2 cut(s) 221, 283
DpnI GATC 4 cut(s) 288, 299, 329, 441
DpnII GATC 4 cut(s) 286, 297, 327, 439
EaeI YGGCCR 2 cut(s) 208, 565
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 483
FaeI CATG 3 cut(s) 349, 391, 403
FatI CATG 3 cut(s) 345, 387, 399
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 2 cut(s) 81, 546
FokI GGATG 3 cut(s) 89, 212, 548
Fsp4HI GCNGC 2 cut(s) 81, 546
GluI GCNGC 2 cut(s) 81, 546
GsaI CCCAGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 210, 567
Hin1II CATG 3 cut(s) 349, 391, 403
HindIII AAGCTT 2 cut(s) 9, 107
HinfI GANTC 3 cut(s) 150, 278, 552
HphI GGTGA 1 cut(s) 396
Hpy166II GTNNAC 2 cut(s) 132, 189
Hpy188III TCNNGA 5 cut(s) 47, 290, 301, 323, 445
Hpy8I GTNNAC 2 cut(s) 132, 189
HpyAV CCTTC 2 cut(s) 416, 497
HpyCH4III ACNGT 3 cut(s) 136, 193, 356
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 374
HpyF3I CTNAG 2 cut(s) 221, 283
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 349, 391, 403
Kzo9I GATC 4 cut(s) 286, 297, 327, 439
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 9 cut(s) 53, 59, 69, 308, 350, 368, 436, 499, 534
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 67
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 402
MalI GATC 4 cut(s) 288, 299, 329, 441
MboI GATC 4 cut(s) 286, 297, 327, 439
MboII GAAGA 2 cut(s) 28, 473
MhlI GDGCHC 1 cut(s) 481
MlsI TGGCCA 2 cut(s) 210, 567
MluCI AATT 1 cut(s) 317
MluNI TGGCCA 2 cut(s) 210, 567
MnlI CCTC 5 cut(s) 48, 228, 237, 288, 386
Mox20I TGGCCA 2 cut(s) 210, 567
MscI TGGCCA 2 cut(s) 210, 567
MseI TTAA 3 cut(s) 531, 540, 577
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 2 cut(s) 210, 567
MspA1I CMGCKG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 530
NdeII GATC 4 cut(s) 286, 297, 327, 439
NlaIII CATG 3 cut(s) 349, 391, 403
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 150, 278, 552
PkrI GCNGC 2 cut(s) 82, 547
Ppu21I YACGTR 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 397
RsaI GTAC 2 cut(s) 173, 472
RsaNI GTAC 2 cut(s) 172, 471
RseI CAYNNNNRTG 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 531, 540, 577
SatI GCNGC 2 cut(s) 81, 546
Sau3AI GATC 4 cut(s) 286, 297, 327, 439
SduI GDGCHC 1 cut(s) 481
SetI ASST 6 cut(s) 13, 24, 111, 229, 273, 472
SfaNI GCATC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 443, 530
SmoI CTYRAG 2 cut(s) 443, 530
Sse9I AATT 1 cut(s) 317
SsiI CCGC 1 cut(s) 546
TaaI ACNGT 3 cut(s) 136, 193, 356
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 27, 289
TasI AATT 1 cut(s) 317
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 3 cut(s) 150, 278, 552
Tru1I TTAA 3 cut(s) 531, 540, 577
Tru9I TTAA 3 cut(s) 531, 540, 577
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 3 cut(s) 101, 334, 516
Vha464I CTTAAG 1 cut(s) 530
XapI RAATTY 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.