pycom07g27980
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009939
Physical Location & Seq
Reverse (-)
27495876 .. 27498029
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27980.3

Sequence Viewer

Length: 582 bp
ATGGGTCAAGCTTTTCGGAAGCTCTTCGACACCTTCTTCGGCAACACTGAGATGCGAGTTGTAATGCTTGGCCTCGACGCAGCCGGTAAAACAACCATCCTTTACAAGCTGCACATTGGTGAAGTTTTGTCAACTGTCCCTACAATAGGTTTCAATGTGGAGAAAATTCAGTATAAGAATGTGATGTTCACCGTTTGGGATGTCGGTGGACAAGAGAAACTAAGGCCACTCTGGAGGCATTACTTTAATAACACGGACGGGCTGATTTACGTTGTTGATTCCTTGGACAGAGAGAGAATTGGAAGAGCAAAGGCGGAATTTCAGGCCATCATCAGTGATCCTTTTATGCTCAGCAGTGTCATCTTGGTGTTTGCTAATAAACAGGATATGAAAGGAGCTATGTCACCAATGGAAGTGTGTGAAGGACTAGGCCTATTTGATCTCAAGAACAGAAAATGGCACATACAAGGGACTTGTGCCCTTCGAGGCGATGGCCTTTACGAGGGCTTGGATTGGTTAGCTAGCACGCTGAAAGAGATGAGAGCTGCTGGATACTCTTCAGTGGGCACCTCGTCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

7.75

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 566
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 165, 317
AcuI CTGAAG 1 cut(s) 543
AfiI CCNNNNNNNGG 2 cut(s) 146, 502
AgsI TTSAA 1 cut(s) 154
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 6 cut(s) 11, 22, 109, 398, 521, 545
AluI AGCT 6 cut(s) 11, 22, 109, 398, 521, 545
AlwI GGATC 1 cut(s) 332
AoxI GGCC 5 cut(s) 70, 224, 324, 430, 493
ApeKI GCWGC 3 cut(s) 80, 109, 545
ApoI RAATTY 2 cut(s) 165, 317
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 131, 181, 396
AsuNHI GCTAGC 1 cut(s) 521
BaeGI GKGCMC 2 cut(s) 481, 569
BanI GGYRCC 1 cut(s) 566
BbvI GCAGC 3 cut(s) 92, 96, 532
BccI CCATC 3 cut(s) 104, 335, 485
BciVI GTATCC 1 cut(s) 545
BfaI CTAG 2 cut(s) 428, 522
BfuI GTATCC 1 cut(s) 545
BisI GCNGC 3 cut(s) 81, 110, 546
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 3 cut(s) 82, 111, 547
BmiI GGNNCC 1 cut(s) 568
BmsI GCATC 1 cut(s) 42
BmtI GCTAGC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 253
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 502
Bse118I RCCGGY 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 96, 205
BseLI CCNNNNNNNGG 2 cut(s) 146, 502
BseMII CTCAG 2 cut(s) 39, 364
BseSI GKGCMC 2 cut(s) 481, 569
BseXI GCAGC 3 cut(s) 92, 96, 532
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 5 cut(s) 72, 226, 326, 432, 495
BshNI GGYRCC 1 cut(s) 566
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 2 cut(s) 122, 484
BslI CCNNNNNNNGG 2 cut(s) 146, 502
BsmFI GGGAC 2 cut(s) 122, 484
BsnI GGCC 5 cut(s) 72, 226, 326, 432, 495
Bsp1286I GDGCHC 2 cut(s) 481, 569
Bsp143I GATC 2 cut(s) 337, 439
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 1 cut(s) 314
BspANI GGCC 5 cut(s) 72, 226, 326, 432, 495
BspCNI CTCAG 2 cut(s) 40, 363
BspLI GGNNCC 1 cut(s) 568
BspOI GCTAGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 332
BspQI GCTCTTC 2 cut(s) 29, 298
BspT107I GGYRCC 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 337, 439
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 136, 193
Bst6I CTCTTC 3 cut(s) 29, 298, 562
BstC8I GCNNGC 2 cut(s) 523, 527
BstDEI CTNAG 3 cut(s) 48, 221, 350
BstENI CCTNNNNNAGG 2 cut(s) 144, 500
BstF5I GGATG 2 cut(s) 96, 205
BstKTI GATC 2 cut(s) 340, 442
BstMBI GATC 2 cut(s) 337, 439
BstSLI GKGCMC 2 cut(s) 481, 569
BstV1I GCAGC 3 cut(s) 92, 96, 532
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 5 cut(s) 72, 226, 326, 432, 495
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 96, 205
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 4 cut(s) 45, 340, 361, 567
Cac8I GCNNGC 2 cut(s) 523, 527
Cfr10I RCCGGY 1 cut(s) 83
CseI GACGC 1 cut(s) 86
DdeI CTNAG 3 cut(s) 48, 221, 350
DpnI GATC 2 cut(s) 339, 441
DpnII GATC 2 cut(s) 337, 439
Eam1104I CTCTTC 3 cut(s) 29, 298, 562
EarI CTCTTC 3 cut(s) 29, 298, 562
EciI GGCGGA 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 543
EcoNI CCTNNNNNAGG 2 cut(s) 144, 500
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaiI YATR 5 cut(s) 174, 347, 389, 401, 464
FaqI GGGAC 2 cut(s) 122, 484
Fnu4HI GCNGC 3 cut(s) 81, 110, 546
FokI GGATG 2 cut(s) 83, 212
Fsp4HI GCNGC 3 cut(s) 81, 110, 546
FspBI CTAG 2 cut(s) 428, 522
GluI GCNGC 3 cut(s) 81, 110, 546
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 5 cut(s) 72, 226, 326, 432, 495
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 131, 181, 396
Hpy166II GTNNAC 3 cut(s) 132, 189, 209
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 2 cut(s) 232, 445
Hpy8I GTNNAC 3 cut(s) 132, 189, 209
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 43, 416, 491
HpyCH4III ACNGT 2 cut(s) 136, 193
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 48, 221, 350
HpySE526I ACGT 1 cut(s) 270
Kzo9I GATC 2 cut(s) 337, 439
LguI GCTCTTC 2 cut(s) 29, 298
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 5 cut(s) 97, 217, 308, 368, 534
Lsp1109I GCAGC 3 cut(s) 92, 96, 532
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 428, 522
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 402
MalI GATC 2 cut(s) 339, 441
MboI GATC 2 cut(s) 337, 439
MboII GAAGA 4 cut(s) 16, 28, 315, 549
MhlI GDGCHC 2 cut(s) 481, 569
MluCI AATT 3 cut(s) 165, 297, 317
MnlI CCTC 5 cut(s) 83, 228, 479, 496, 580
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 3 cut(s) 50, 117, 365
MspI CCGG 1 cut(s) 84
NdeII GATC 2 cut(s) 337, 439
NheI GCTAGC 1 cut(s) 521
NlaIV GGNNCC 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 402
OliI CACNNNNGTG 1 cut(s) 117
PceI AGGCCT 1 cut(s) 432
PciSI GCTCTTC 2 cut(s) 29, 298
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 82, 111, 547
PspN4I GGNNCC 1 cut(s) 568
RseI CAYNNNNRTG 3 cut(s) 50, 117, 365
SapI GCTCTTC 2 cut(s) 29, 298
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 81, 110, 546
Sau3AI GATC 2 cut(s) 337, 439
SduI GDGCHC 2 cut(s) 481, 569
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 3 cut(s) 50, 117, 365
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 3 cut(s) 165, 297, 317
SseBI AGGCCT 1 cut(s) 432
SsiI CCGC 1 cut(s) 314
SspMI CTAG 2 cut(s) 428, 522
StuI AGGCCT 1 cut(s) 432
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 136, 193
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 27, 75, 484
TasI AATT 3 cut(s) 165, 297, 317
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 4 cut(s) 52, 340, 361, 567
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 3 cut(s) 80, 109, 545
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 1 cut(s) 404
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 4 cut(s) 52, 340, 361, 567
XagI CCTNNNNNAGG 2 cut(s) 144, 500
XapI RAATTY 2 cut(s) 165, 317
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 428, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.