Rh1BG426900
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009939
Physical Location & Seq
Reverse (-)
54474598 .. 54477468
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG426900.1

Sequence Viewer

Length: 519 bp
ATGCTTGGACTAGATGCGGCTGGTAAAACAACCATCCTTTACAAACTGCATATTGGAGAAGTCTTGTCAACTGTTCCTACAATAGGTTTTAATGTGGAAAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGGCAAGAGAAACTAAGGCCGCTCTGGAGGCATTACTTTAATAATACGGATGGACTGATTTATGTCGTTGACTCTTTGGACAGGGAGAGAATTGGACGAGCCAAGGCAGAATTTCAGGCCATAATCAGTGATCCATTTATGCTCAACAGTGTCATCTTGGTGTTTGCGAACAAACAGGATATGAAAGGAGCTATGTCCCCAATGGAAGTATGTGAAGGGCTAGGCCTGTTCGATCTCAAGAACAGAAAATGGCACATACAGGGGACCTGTGCCCTTCGGGGTGATGGCCTTTATGAGGGCTTGGATTGGCTAGCGAACACCCTCAAGGAGATGAGAGCTGCTGGATACTCTTCAGTGGGCACCTCATCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

172

Amino Acids

19.27

Weight (kDa)

6.83

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 1 - 155 2.2e-66 ADP-ribosylation factor family
Roc PF08477 1 - 108 6.7e-11 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 1 - 111 6.3e-09 Ras family
SRPRB PF09439 2 - 118 1.4e-09 Signal recognition particle receptor beta subunit
Gtr1_RagA PF04670 2 - 108 1.7e-07 Gtr1/RagA G protein conserved region
G-alpha PF00503 23 - 109 3e-10 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 166
AciI CCGC 2 cut(s) 17, 164
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 83, 439
AluBI AGCT 2 cut(s) 335, 482
AluI AGCT 2 cut(s) 335, 482
AlwI GGATC 1 cut(s) 269
AoxI GGCC 4 cut(s) 161, 261, 367, 430
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 408
BaeGI GKGCMC 2 cut(s) 418, 506
BanI GGYRCC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 469
BccI CCATC 3 cut(s) 41, 188, 422
BciVI GTATCC 1 cut(s) 482
BfaI CTAG 3 cut(s) 11, 365, 455
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 3 cut(s) 18, 164, 483
BlsI GCNGC 3 cut(s) 19, 165, 484
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 409, 505
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 190
BpuEI CTTGAG 2 cut(s) 365, 452
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 439
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 33, 142, 199
BseLI CCNNNNNNNGG 2 cut(s) 83, 439
BseSI GKGCMC 2 cut(s) 418, 506
BseXI GCAGC 1 cut(s) 469
BshFI GGCC 4 cut(s) 163, 263, 369, 432
BshNI GGYRCC 1 cut(s) 503
BslFI GGGAC 2 cut(s) 325, 421
BslI CCNNNNNNNGG 2 cut(s) 83, 439
BsmFI GGGAC 2 cut(s) 325, 421
BsnI GGCC 4 cut(s) 163, 263, 369, 432
Bsp1286I GDGCHC 2 cut(s) 418, 506
Bsp143I GATC 2 cut(s) 274, 376
BspACI CCGC 2 cut(s) 17, 164
BspANI GGCC 4 cut(s) 163, 263, 369, 432
BspLI GGNNCC 2 cut(s) 409, 505
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 274, 376
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 73, 130, 293
Bst6I CTCTTC 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 158
BstENI CCTNNNNNAGG 2 cut(s) 81, 437
BstF5I GGATG 3 cut(s) 33, 142, 199
BstKTI GATC 2 cut(s) 277, 379
BstMBI GATC 2 cut(s) 274, 376
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstSLI GKGCMC 2 cut(s) 418, 506
BstV1I GCAGC 1 cut(s) 469
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 4 cut(s) 163, 263, 369, 432
BtsCI GGATG 3 cut(s) 33, 142, 199
BtsIMutI CAGTG 3 cut(s) 277, 298, 504
Cac8I GCNNGC 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 109
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 276, 378
DpnII GATC 2 cut(s) 274, 376
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 480
EcoNI CCTNNNNNAGG 2 cut(s) 81, 437
EcoO109I RGGNCCY 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaiI YATR 9 cut(s) 51, 207, 266, 284, 326, 338, 355, 401, 438
FaqI GGGAC 2 cut(s) 325, 421
Fnu4HI GCNGC 3 cut(s) 18, 164, 483
FokI GGATG 3 cut(s) 20, 149, 206
Fsp4HI GCNGC 3 cut(s) 18, 164, 483
FspBI CTAG 3 cut(s) 11, 365, 455
GluI GCNGC 3 cut(s) 18, 164, 483
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 4 cut(s) 163, 263, 369, 432
HincII GTYRAC 2 cut(s) 69, 214
HindII GTYRAC 2 cut(s) 69, 214
HinfI GANTC 1 cut(s) 215
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 69, 126, 214
Hpy188III TCNNGA 2 cut(s) 169, 382
Hpy8I GTNNAC 3 cut(s) 69, 126, 214
HpyAV CCTTC 2 cut(s) 353, 428
HpyCH4III ACNGT 3 cut(s) 73, 130, 293
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 158
Kzo9I GATC 2 cut(s) 274, 376
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 9 cut(s) 6, 154, 211, 245, 305, 383, 389, 424, 471
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 11, 365, 455
MalI GATC 2 cut(s) 276, 378
MbiI CCGCTC 1 cut(s) 166
MboI GATC 2 cut(s) 274, 376
MboII GAAGA 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 418, 506
MluCI AATT 2 cut(s) 234, 254
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 4 cut(s) 165, 433, 476, 517
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 2 cut(s) 90, 183
MslI CAYNNNNRTG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 2 cut(s) 274, 376
NheI GCTAGC 1 cut(s) 454
NlaIV GGNNCC 2 cut(s) 409, 505
PceI AGGCCT 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 102
PkrI GCNGC 3 cut(s) 19, 165, 484
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 409, 505
PspPI GGNCC 1 cut(s) 408
PspPPI RGGWCCY 1 cut(s) 408
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 90, 183
SatI GCNGC 3 cut(s) 18, 164, 483
Sau3AI GATC 2 cut(s) 274, 376
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 2 cut(s) 418, 506
SetI ASST 5 cut(s) 88, 337, 413, 484, 509
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 2 cut(s) 380, 467
SmoI CTYRAG 2 cut(s) 380, 467
Sse9I AATT 2 cut(s) 234, 254
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 2 cut(s) 17, 164
SspMI CTAG 3 cut(s) 11, 365, 455
StuI AGGCCT 1 cut(s) 369
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 3 cut(s) 73, 130, 293
TaqI TCGA 1 cut(s) 375
TasI AATT 2 cut(s) 234, 254
TatI WGTACW 1 cut(s) 108
TauI GCSGC 2 cut(s) 20, 166
Tru1I TTAA 2 cut(s) 90, 183
Tru9I TTAA 2 cut(s) 90, 183
TscAI CASTG 3 cut(s) 277, 298, 504
TseI GCWGC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 277, 298, 504
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 2 cut(s) 81, 437
XapI RAATTY 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 3 cut(s) 11, 365, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.