AT5G17550

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013497
Physical Location & Seq
Reverse (-)
5786414 .. 5788304
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17550.1

Sequence Viewer

Length: 738 bp
ATGGCCAACGATACTCACACCGATGACTTAGACGAGCTTCTCGATAGTGCCTTGGATGATTTCAAGGATCTTAATCTTACTCAAAGAAATGGAGGGGTTAAGAAAGAAGAGGGTGATAAAAAAGAGACAGAGTCATTGCCAAGTGGGGTTCAAGGTCTTGGAATGGGGTTACCAGATATGAGGAGTAAGAAGAAAGGAAAGAAAAAGATTGCTAAAGAGGACCATGTTACTGAGGCACTTGATAAACTCAGGGAACAAACTAGAGAAACTGTGAAGGGACTTGAGTCCTTGTCATCGAAGCAGCAACCTACAGGTTCTGATGATGCTATGGTTGAAGATTGGATCAAGCAATTCGAGAATCTTACTGGGTCTAACGACTTGGAGTCGATAGTGGACACGATGATGCAACAGCTGTTATCGAAGGATATTCTTCACGAACCAATGAAAGAGATTGGTGCAAGATACCCAAAATGGCTAGAAGAGCATGAATCCAGTCTAAACAAGGAAGAATTCGATCGTTATTCACGCCAGTATGAACTTATCAAAGAACTCAACTTGGTGTACGAGAACGAACCAAACAATTCGACCAAGATAATGGAGATAATGCAGAAGATGCAAGAGTGTGGACAACCACCGAGTGATATAGTGCAAGAGATGGATCCTGGCTTTGATTTCGCTAGTCTGGGCCAAATGTCTCCGGACATGCTCGAGTCTTCACCAAATTGTTGTGTAATGTGA

Protein Analysis

245

Amino Acids

27.84

Weight (kDa)

4.58

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex19 PF04614 39 - 242 1.7e-36 Pex19 protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17550 AT5G17550
fragaria_vesca FvH4_5g18890 FvH4_5g18890
malus_domestica MD06G1058700.v1.1
prunus_persica Prupe.5G069700_v2.0.a1 Prupe.5G069700_v2.0.a1
pyrus_communis pycom06g04900
rosa_chinensis RchiOBHm_Chr7g0203271
rosa_laevigata RLG00000003538
rosa_multiflora Rmu_sc0003582.1_g000004
rosa_roxburghii Rroxscaffold_3G00253890
rosa_rugosa Rorug07G0075500
rosa_samantha Rh7AG205000 Rh7BG204400 Rh7CG216000 Rh7DG211600
rosa_wichuraiana Rw7G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 697
AclWI GGATC 4 cut(s) 75, 350, 653, 666
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 509
AdeI CACNNNGTG 1 cut(s) 638
AfaI GTAC 1 cut(s) 563
AgsI TTSAA 3 cut(s) 64, 152, 335
AhdI GACNNNNNGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 2 cut(s) 37, 412
AluI AGCT 2 cut(s) 37, 412
Alw26I GTCTC 2 cut(s) 119, 699
AlwI GGATC 4 cut(s) 75, 350, 653, 666
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 2 cut(s) 3, 685
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 220, 685
AsuHPI GGTGA 2 cut(s) 125, 708
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 658
BbsI GAAGAC 1 cut(s) 705
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 663
BcoDI GTCTC 2 cut(s) 119, 699
BfaI CTAG 3 cut(s) 261, 476, 678
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 1 cut(s) 220
BmeRI GACNNNNNGTC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 220, 685
BmiI GGNNCC 1 cut(s) 660
BmrFI CCNGG 1 cut(s) 663
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 313, 393, 603
BmuI ACTGGG 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 697
Bse1I ACTGG 3 cut(s) 370, 492, 529
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 72
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 222, 262
BseNI ACTGG 3 cut(s) 370, 492, 529
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 2 cut(s) 5, 687
BsiEI CGRYCG 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 119, 699
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 2 cut(s) 5, 687
BsoBI CYCGRG 1 cut(s) 707
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 4 cut(s) 67, 342, 514, 658
BspANI GGCC 2 cut(s) 5, 687
BspCNI CTCAG 2 cut(s) 223, 261
BspEI TCCGGA 1 cut(s) 697
BspLI GGNNCC 1 cut(s) 660
BspPI GGATC 4 cut(s) 75, 350, 653, 666
BspQI GCTCTTC 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 3 cut(s) 370, 492, 529
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 4 cut(s) 67, 342, 514, 658
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 102, 474
BstAPI GCANNNNNTGC 1 cut(s) 613
BstDEI CTNAG 3 cut(s) 28, 231, 248
BstEII GGTNACC 1 cut(s) 168
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 4 cut(s) 70, 345, 517, 661
BstMAI GTCTC 2 cut(s) 119, 699
BstMBI GATC 4 cut(s) 67, 342, 514, 658
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 2 cut(s) 481, 613
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 1 cut(s) 706
BstPAI GACNNNNGTC 1 cut(s) 283
BstPI GGTNACC 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 661
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 705
BstX2I RGATCY 2 cut(s) 67, 658
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 2 cut(s) 67, 658
BsuRI GGCC 2 cut(s) 5, 687
BtsCI GGATG 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 220, 685
Csp6I GTAC 1 cut(s) 562
CviAII CATG 3 cut(s) 224, 485, 703
CviJI RGCY 6 cut(s) 5, 37, 412, 475, 666, 687
CviKI_1 RGCY 6 cut(s) 5, 37, 412, 475, 666, 687
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 3 cut(s) 28, 231, 248
DpnI GATC 4 cut(s) 69, 344, 516, 660
DpnII GATC 4 cut(s) 67, 342, 514, 658
DraIII CACNNNGTG 1 cut(s) 638
DriI GACNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 102, 474
Eam1105I GACNNNNNGTC 1 cut(s) 382
EarI CTCTTC 2 cut(s) 102, 474
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 707
Eco91I GGTNACC 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 3 cut(s) 227, 488, 706
FaiI YATR 7 cut(s) 179, 225, 329, 486, 534, 644, 704
FaqI GGGAC 1 cut(s) 291
FatI CATG 3 cut(s) 223, 484, 702
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 3 cut(s) 261, 476, 678
GluI GCNGC 1 cut(s) 302
HaeIII GGCC 2 cut(s) 5, 687
HapII CCGG 1 cut(s) 698
Hin1II CATG 3 cut(s) 227, 488, 706
HinfI GANTC 6 cut(s) 131, 284, 358, 383, 488, 710
HpaII CCGG 1 cut(s) 698
HphI GGTGA 2 cut(s) 125, 708
Hpy166II GTNNAC 3 cut(s) 394, 562, 626
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 41, 355, 434, 698
Hpy8I GTNNAC 3 cut(s) 394, 562, 626
HpyAV CCTTC 2 cut(s) 268, 415
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 406, 458, 607, 616, 649
HpyF10VI GCNNNNNNNGC 2 cut(s) 481, 613
HpyF3I CTNAG 3 cut(s) 28, 231, 248
Hsp92II CATG 3 cut(s) 227, 488, 706
Kpn2I TCCGGA 1 cut(s) 697
Kzo9I GATC 4 cut(s) 67, 342, 514, 658
LguI GCTCTTC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 3 cut(s) 313, 393, 603
MaeI CTAG 3 cut(s) 261, 476, 678
MaeIII GTNAC 2 cut(s) 168, 226
MalI GATC 4 cut(s) 69, 344, 516, 660
MboI GATC 4 cut(s) 67, 342, 514, 658
MboII GAAGA 8 cut(s) 119, 202, 347, 422, 491, 518, 622, 705
MflI RGATCY 2 cut(s) 67, 658
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 350, 509, 580, 721
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 140, 293, 392, 719
MnlI CCTC 5 cut(s) 86, 103, 174, 211, 226
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 697
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 72, 99
MslI CAYNNNNRTG 2 cut(s) 21, 401
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 1 cut(s) 663
MvaI CCWGG 1 cut(s) 663
MwoI GCNNNNNNNGC 2 cut(s) 481, 613
NdeII GATC 4 cut(s) 67, 342, 514, 658
NlaIII CATG 3 cut(s) 227, 488, 706
NlaIV GGNNCC 1 cut(s) 660
NspI RCATGY 1 cut(s) 706
PaeR7I CTCGAG 1 cut(s) 707
PciSI GCTCTTC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 2 cut(s) 358, 488
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 303
Ple19I CGATCG 1 cut(s) 517
PleI GAGTC 4 cut(s) 139, 292, 391, 718
PpsI GAGTC 4 cut(s) 139, 292, 391, 718
PshAI GACNNNNGTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 661
PspEI GGTNACC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 660
PspPI GGNCC 2 cut(s) 220, 685
PspXI VCTCGAGB 1 cut(s) 707
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 2 cut(s) 67, 658
PsyI GACNNNGTC 1 cut(s) 130
PvuI CGATCG 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 412
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
RseI CAYNNNNRTG 2 cut(s) 21, 401
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 72, 99
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 4 cut(s) 67, 342, 514, 658
Sau96I GGNCC 2 cut(s) 220, 685
SchI GAGTC 4 cut(s) 140, 293, 392, 719
ScrFI CCNGG 1 cut(s) 663
SetI ASST 5 cut(s) 39, 157, 310, 316, 414
SfaNI GCATC 3 cut(s) 313, 393, 603
SfcI CTRYAG 1 cut(s) 309
Sfr274I CTCGAG 1 cut(s) 707
SinI GGWCC 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 21, 401
SmlI CTYRAG 2 cut(s) 281, 707
SmoI CTYRAG 2 cut(s) 281, 707
Sse9I AATT 4 cut(s) 350, 509, 580, 721
SspMI CTAG 3 cut(s) 261, 476, 678
StyD4I CCNGG 1 cut(s) 661
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 8 cut(s) 42, 296, 354, 386, 419, 513, 584, 708
TasI AATT 4 cut(s) 350, 509, 580, 721
TfiI GAWTC 2 cut(s) 358, 488
Tru1I TTAA 2 cut(s) 72, 99
Tru9I TTAA 2 cut(s) 72, 99
TseI GCWGC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 458, 501, 549
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 509
XceI RCATGY 1 cut(s) 706
XhoI CTCGAG 1 cut(s) 707
XspI CTAG 3 cut(s) 261, 476, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.