Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013497

Physical Location & Seq

Genomic Coordinates Reverse (-)

10854696 .. 10858732

Gene Structure 4037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTGACCACTCCGACGATTTAGACCAACTCCTTGACAGTGCTTTAGATGACTTCCAGAATCTCAACCTCAGCAAACCCTCCCTCGAAAGAAGTAAAGAAACTGTAGAGACCAAGCGAGAATTTCCTTCCTTGCCTGCTGGGGTTCAAGGACTTGGAATGGGGTTACCTGACCTCAAAGCTAAGAAAAAGGGGAAGCAAAAGGTTGCGGGTGGATCCCATGTTACTGAGGCACTTGATAAGCTCAGAGAGCAGACAAGAGAGGCTGTTAGGGGACTGGAAAGCATGAGTCCACAACCTGGGGCAGATGATTTTTCCAAGGACCTGATGATGGAGGATTGGGTCAAGCAGTTTGAGGAACTTGCTGGCGGTCAGGACATGGGATCTATGGTTGAGACCATGATGCAACAGCTTTTGTCCAAGGAGATTCTTTACGAACCAATGAAGGAAATTGGGGAAAAGTATCCAAAGTGGTTGAAGGATAATGAAGCAACTTTGAGTAAAGAAGAATATGATCGTTGTTTCCACCAGTGTGAACTCATTAAAGAACTTAATGAAGTGTATGAAAATGATTCTGGCAACTACAACAAAATCTTTGAAATTATGCAGAAAATGCAAGAATGCGGCCAACCACCTAATGCTATTGTTCAGGAGCTTGCTCCTGATTTTGATCTAGCTAGTCTTGGACAAATATCTCCAGAGATGCTAGAGTCGCAGGGAAATTGTTGTATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033328 GO:0033365 GO:0034613 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex19

Protein Analysis

246

Amino Acids

27.63

Weight (kDa)

4.55

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex19	PF04614	23 - 242	2e-34	Pex19 protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17550 AT5G17550
fragaria_vesca	FvH4_5g18890 FvH4_5g18890
malus_domestica	MD06G1058700.v1.1
prunus_persica	Prupe.5G069700_v2.0.a1 Prupe.5G069700_v2.0.a1
pyrus_communis	pycom06g04900
rosa_chinensis	RchiOBHm_Chr7g0203271
rosa_laevigata	RLG00000003538
rosa_multiflora	Rmu_sc0003582.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253890
rosa_rugosa	Rorug07G0075500
rosa_samantha	Rh7AG205000 Rh7BG204400 Rh7CG216000 Rh7DG211600
rosa_wichuraiana	Rw7G017850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AciI	CCGC	3 cut(s)	209, 369, 624
AclWI	GGATC	3 cut(s)	210, 223, 391
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	299, 331
AgsI	TTSAA	3 cut(s)	149, 478, 599
AjnI	CCWGG	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	531
AluBI	AGCT	5 cut(s)	182, 244, 412, 655, 677
AluI	AGCT	5 cut(s)	182, 244, 412, 655, 677
Alw26I	GTCTC	2 cut(s)	104, 389
AlwI	GGATC	3 cut(s)	210, 223, 391
AoxI	GGCC	1 cut(s)	625
ApoI	RAATTY	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	104, 389
BfaI	CTAG	3 cut(s)	674, 678, 707
BfmI	CTRYAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	1 cut(s)	625
BlsI	GCNGC	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	393, 693
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	2 cut(s)	104, 389
BsaJI	CCNNGG	3 cut(s)	299, 318, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 331
Bse1I	ACTGG	2 cut(s)	282, 529
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	299, 318, 420
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	2 cut(s)	299, 331
BseMII	CTCAG	3 cut(s)	85, 219, 259
BseNI	ACTGG	2 cut(s)	282, 529
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	627
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	299, 331
BsmAI	GTCTC	2 cut(s)	104, 389
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	627
Bso31I	GGTCTC	2 cut(s)	104, 389
Bsp143I	GATC	4 cut(s)	215, 383, 514, 670
BspACI	CCGC	3 cut(s)	209, 369, 624
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	3 cut(s)	84, 220, 258
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	3 cut(s)	210, 223, 391
BspTNI	GGTCTC	2 cut(s)	104, 389
BsrI	ACTGG	2 cut(s)	282, 529
BssECI	CCNNGG	3 cut(s)	299, 318, 420
BssMI	GATC	4 cut(s)	215, 383, 514, 670
BssT1I	CCWWGG	2 cut(s)	318, 420
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	41, 106
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstC8I	GCNNGC	3 cut(s)	138, 367, 657
BstDEI	CTNAG	4 cut(s)	71, 183, 228, 245
BstEII	GGTNACC	1 cut(s)	165
BstKTI	GATC	4 cut(s)	218, 386, 517, 673
BstMAI	GTCTC	2 cut(s)	104, 389
BstMBI	GATC	4 cut(s)	215, 383, 514, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 613, 712
BstNI	CCWGG	1 cut(s)	300
BstPI	GGTNACC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	215, 383
BstYI	RGATCY	2 cut(s)	215, 383
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	46, 536
Cac8I	GCNNGC	3 cut(s)	138, 367, 657
Cfr13I	GGNCC	1 cut(s)	322
CviAII	CATG	4 cut(s)	221, 286, 379, 400
CviJI	RGCY	8 cut(s)	5, 182, 244, 266, 412, 627, 655, 677
CviKI_1	RGCY	8 cut(s)	5, 182, 244, 266, 412, 627, 655, 677
DdeI	CTNAG	4 cut(s)	71, 183, 228, 245
DpnI	GATC	4 cut(s)	217, 385, 516, 672
DpnII	GATC	4 cut(s)	215, 383, 514, 670
EaeI	YGGCCR	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	318, 420
Eco31I	GGTCTC	2 cut(s)	104, 389
Eco47I	GGWCC	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	318, 420
ErhI	CCWWGG	2 cut(s)	318, 420
FaeI	CATG	4 cut(s)	224, 289, 382, 403
FaiI	YATR	9 cut(s)	222, 287, 380, 389, 401, 513, 564, 605, 731
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	4 cut(s)	220, 285, 378, 399
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	625
Fsp4HI	GCNGC	1 cut(s)	625
FspBI	CTAG	3 cut(s)	674, 678, 707
GluI	GCNGC	1 cut(s)	625
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	627
Hin1II	CATG	4 cut(s)	224, 289, 382, 403
HinfI	GANTC	5 cut(s)	61, 289, 427, 572, 710
Hpy166II	GTNNAC	2 cut(s)	293, 536
Hpy188I	TCNGA	2 cut(s)	16, 248
Hpy188III	TCNNGA	5 cut(s)	58, 374, 650, 662, 698
Hpy8I	GTNNAC	2 cut(s)	293, 536
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	138, 439, 472
HpyCH4III	ACNGT	2 cut(s)	41, 106
HpyCH4V	TGCA	3 cut(s)	406, 607, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 613, 712
HpyF3I	CTNAG	4 cut(s)	71, 183, 228, 245
Hsp92II	CATG	4 cut(s)	224, 289, 382, 403
Kzo9I	GATC	4 cut(s)	215, 383, 514, 670
LmnI	GCTCC	2 cut(s)	652, 664
LweI	GCATC	2 cut(s)	393, 693
MaeI	CTAG	3 cut(s)	674, 678, 707
MaeIII	GTNAC	2 cut(s)	165, 223
MalI	GATC	4 cut(s)	217, 385, 516, 672
MboI	GATC	4 cut(s)	215, 383, 514, 670
MboII	GAAGA	1 cut(s)	518
MflI	RGATCY	2 cut(s)	215, 383
MluCI	AATT	4 cut(s)	122, 450, 600, 721
MlyI	GAGTC	2 cut(s)	298, 719
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	8 cut(s)	80, 91, 95, 185, 223, 256, 328, 349
MseI	TTAA	2 cut(s)	543, 552
MslI	CAYNNNNRTG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	250, 613, 712
NdeII	GATC	4 cut(s)	215, 383, 514, 670
NlaIII	CATG	4 cut(s)	224, 289, 382, 403
NlaIV	GGNNCC	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	531
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	3 cut(s)	61, 427, 572
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	626
PleI	GAGTC	2 cut(s)	297, 718
PpsI	GAGTC	2 cut(s)	297, 718
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	215, 383
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	543, 552
SatI	GCNGC	1 cut(s)	625
Sau3AI	GATC	4 cut(s)	215, 383, 514, 670
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	298, 719
ScrFI	CCNGG	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	393, 693
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	4 cut(s)	122, 450, 600, 721
SsiI	CCGC	3 cut(s)	209, 369, 624
SspMI	CTAG	3 cut(s)	674, 678, 707
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	318, 420
TaaI	ACNGT	2 cut(s)	41, 106
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	122, 450, 600, 721
TauI	GCSGC	1 cut(s)	627
TfiI	GAWTC	3 cut(s)	61, 427, 572
Tru1I	TTAA	2 cut(s)	543, 552
Tru9I	TTAA	2 cut(s)	543, 552
TscAI	CASTG	2 cut(s)	46, 536
TspDTI	ATGAA	4 cut(s)	458, 501, 570, 579
TspRI	CASTG	2 cut(s)	46, 536
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	122
XspI	CTAG	3 cut(s)	674, 678, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.