Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013497

Physical Location & Seq

Genomic Coordinates Forward (+)

49795419 .. 49799261

Gene Structure 3843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTGACCACTCCGACGATTTAGACCAACTCCTTGACAGTGCTTTAGATGACTTTCAGAATCTCAACCTCAGCAAACCCTCCCTTGAAAGAAGTAAAGAAGCTGTAGAGACCAAGCGAGAACTTCCTTCCTTGCCTGCTGGGGTTCAGGGACTTGGTATGGGACTACCTGACCTCAAAGCTAAGAAAAAGGGGAAACAAAAGGTTGCAGGGGGATCCCATGTTACTGAGGCACTTGATAAGCTCAGAGAGCAGACGAGAGAGGCTGTTCGGGGACTGGAAACCATGAGTGCACAACCTGGGGGAGATGATTTTACTAAGGATCCGATGATGGAGGATTGGGTCAAGCAATTTGAGGAACTTGCTGGTGGTCAGGACATGGGATCTATGGTTGAGACCATGATGCAACAGCTTTTGTCCAAGGAGATTCTTTATGAACCAATGAAGGAAATTGGAGAAAAATATCCAAAGTGGTTGAAAGATAATGAAGCAACTTTGAGTAAAGAAGAATATGATCGTTGTTTCCACCAGTGTGAACTCATTAAAGAACTTAATGAAGTCTATGAAAATGATTCTGGCAACTACAACAAAATCTTTGAGATCATGCAGAAAATGCAAGAATGTGGCCAACCACCTAATGCTATTGTGCAGGAGCTTGCTCCTGATTTTGATCTAGCTAGTCTTGGACAAATATCTCCAGAGATGCTAGAGTCGCAGGGAAATTGTTGTATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033328 GO:0033365 GO:0034613 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex19

Protein Analysis

246

Amino Acids

27.54

Weight (kDa)

4.55

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex19	PF04614	60 - 242	2.8e-34	Pex19 protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17550 AT5G17550
fragaria_vesca	FvH4_5g18890 FvH4_5g18890
malus_domestica	MD06G1058700.v1.1
prunus_persica	Prupe.5G069700_v2.0.a1 Prupe.5G069700_v2.0.a1
pyrus_communis	pycom06g04900
rosa_chinensis	RchiOBHm_Chr7g0203271
rosa_laevigata	RLG00000003538
rosa_multiflora	Rmu_sc0003582.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253890
rosa_rugosa	Rorug07G0075500
rosa_samantha	Rh7AG205000 Rh7BG204400 Rh7CG216000 Rh7DG211600
rosa_wichuraiana	Rw7G017850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	210, 223, 317, 330, 391
AcoI	YGGCCR	1 cut(s)	625
AgsI	TTSAA	2 cut(s)	89, 478
AjnI	CCWGG	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	531
AluBI	AGCT	6 cut(s)	104, 182, 244, 412, 655, 677
AluI	AGCT	6 cut(s)	104, 182, 244, 412, 655, 677
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	104, 389
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	5 cut(s)	210, 223, 317, 330, 391
AoxI	GGCC	1 cut(s)	625
ApaLI	GTGCAC	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	627
BamHI	GGATCC	2 cut(s)	215, 322
Bbv12I	GWGCWC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	104, 389
BfaI	CTAG	3 cut(s)	674, 678, 707
BfmI	CTRYAG	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	217, 324
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	393, 693
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	2 cut(s)	104, 389
BsaJI	CCNNGG	2 cut(s)	299, 420
Bse1I	ACTGG	2 cut(s)	282, 529
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	299, 420
BseJI	GATNNNNATC	1 cut(s)	669
BseMII	CTCAG	3 cut(s)	85, 219, 259
BseNI	ACTGG	2 cut(s)	282, 529
BseSI	GKGCMC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	668
BshFI	GGCC	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	3 cut(s)	165, 177, 288
BsmAI	GTCTC	2 cut(s)	104, 389
BsmFI	GGGAC	3 cut(s)	165, 177, 288
BsnI	GGCC	1 cut(s)	627
Bso31I	GGTCTC	2 cut(s)	104, 389
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	3 cut(s)	84, 220, 258
BspLI	GGNNCC	2 cut(s)	217, 324
BspPI	GGATC	5 cut(s)	210, 223, 317, 330, 391
BspTNI	GGTCTC	2 cut(s)	104, 389
BsrI	ACTGG	2 cut(s)	282, 529
BssECI	CCNNGG	2 cut(s)	299, 420
BssMI	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstC8I	GCNNGC	2 cut(s)	138, 657
BstDEI	CTNAG	5 cut(s)	71, 183, 228, 245, 318
BstKTI	GATC	6 cut(s)	218, 325, 386, 517, 603, 673
BstMAI	GTCTC	2 cut(s)	104, 389
BstMBI	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 613, 712
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	295
BstX2I	RGATCY	3 cut(s)	215, 322, 383
BstYI	RGATCY	3 cut(s)	215, 322, 383
BsuRI	GGCC	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	46, 536
Cac8I	GCNNGC	2 cut(s)	138, 657
CviAII	CATG	5 cut(s)	221, 286, 379, 400, 604
CviJI	RGCY	9 cut(s)	5, 104, 182, 244, 266, 412, 627, 655, 677
CviKI_1	RGCY	9 cut(s)	5, 104, 182, 244, 266, 412, 627, 655, 677
DdeI	CTNAG	5 cut(s)	71, 183, 228, 245, 318
DpnI	GATC	6 cut(s)	217, 324, 385, 516, 602, 672
DpnII	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
EaeI	YGGCCR	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	104, 389
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	5 cut(s)	224, 289, 382, 403, 607
FaqI	GGGAC	3 cut(s)	165, 177, 288
FatI	CATG	5 cut(s)	220, 285, 378, 399, 603
FspBI	CTAG	3 cut(s)	674, 678, 707
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	627
Hin1II	CATG	5 cut(s)	224, 289, 382, 403, 607
HinfI	GANTC	4 cut(s)	61, 427, 572, 710
Hpy166II	GTNNAC	2 cut(s)	293, 536
Hpy188I	TCNGA	4 cut(s)	16, 60, 248, 327
Hpy188III	TCNNGA	3 cut(s)	374, 662, 698
Hpy8I	GTNNAC	2 cut(s)	293, 536
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	138, 439
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	6 cut(s)	209, 293, 406, 607, 616, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 613, 712
HpyF3I	CTNAG	5 cut(s)	71, 183, 228, 245, 318
Hsp92II	CATG	5 cut(s)	224, 289, 382, 403, 607
Kzo9I	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
LmnI	GCTCC	2 cut(s)	652, 664
LweI	GCATC	2 cut(s)	393, 693
MaeI	CTAG	3 cut(s)	674, 678, 707
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	6 cut(s)	217, 324, 385, 516, 602, 672
MboI	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
MboII	GAAGA	1 cut(s)	518
MflI	RGATCY	3 cut(s)	215, 322, 383
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	3 cut(s)	350, 450, 721
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	7 cut(s)	80, 91, 185, 223, 256, 328, 349
Mox20I	TGGCCA	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	2 cut(s)	543, 552
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	627
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	250, 613, 712
NdeII	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
NlaIII	CATG	5 cut(s)	224, 289, 382, 403, 607
NlaIV	GGNNCC	2 cut(s)	217, 324
OliI	CACNNNNGTG	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	61, 427, 572
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	217, 324
PsuI	RGATCY	3 cut(s)	215, 322, 383
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	543, 552
Sau3AI	GATC	6 cut(s)	215, 322, 383, 514, 600, 670
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	393, 693
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	3 cut(s)	350, 450, 721
SspMI	CTAG	3 cut(s)	674, 678, 707
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	41
TasI	AATT	3 cut(s)	350, 450, 721
TfiI	GAWTC	3 cut(s)	61, 427, 572
Tru1I	TTAA	2 cut(s)	543, 552
Tru9I	TTAA	2 cut(s)	543, 552
TscAI	CASTG	2 cut(s)	46, 536
TspDTI	ATGAA	5 cut(s)	450, 458, 501, 570, 579
TspRI	CASTG	2 cut(s)	46, 536
VneI	GTGCAC	1 cut(s)	291
XspI	CTAG	3 cut(s)	674, 678, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.