Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013497

Physical Location & Seq

Genomic Coordinates Reverse (-)

8363297 .. 8367883

Gene Structure 4587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G069700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTGATCACTCTGATGATTTAGACGAACTCCTCGATAGTGCCTTAGATGACTTCCAGAATCTCAACCTCAACAAACCCTCCCTTCAGAGAAGTAAAGAATCTACAGAGAACAAGCAAGAACCACCTTCCTTGCCTGCTGGGGTTCAAGGACTTGGCATGGGATTACCTGAAATAAGAACAAAGAAAAAGGGAAAACAAAAGGTTTCAGAGGAATCCCATGTTACTGAGGCTCTTGATAAGCTCAGAGAGCAGACTAGAGAGGCTGTTAAGGGACTGGAATCTGTGACCAGTACGAAACCTGGCGGAGAGGATTTGGGTAAGGATGTGGAAGATTGGGTCAAGCAGTTCGAGGAACTTGCTGGGTCTCAGGACATGGAATCTATTGTTGAGACCATGATGCAGCAGCTTTTGTCTAAGGATATTCTTCATGAACCGATGAAGGAAATTGGAGAAAGATATCCAAAGTGGTTGAAAGAGCATGAAGCGAGTTTGAGTAAGGAAGAACATGAACGTTATTTTCACCAGTACGAACTCATAAAAGATCTTAATGAAGTCTACGAAAAGGATTCTGGAAACTTCACCCGGATTTTTGAGCTCATGCAGAAAATGCAAGAATGCGGCCAACCACCTAATGATATTGTGCAGGAGCTAGCTCCTGATTTTGACCTAGCTAGTCTTGGACAACTGTCTCCAGAGATGCTAGAGTCTCAGACAAATTGTTGTATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033328 GO:0033365 GO:0034613 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex19

Protein Analysis

245

Amino Acids

27.81

Weight (kDa)

4.62

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17550 AT5G17550
fragaria_vesca	FvH4_5g18890 FvH4_5g18890
malus_domestica	MD06G1058700.v1.1
prunus_persica	Prupe.5G069700_v2.0.a1 Prupe.5G069700_v2.0.a1
pyrus_communis	pycom06g04900
rosa_chinensis	RchiOBHm_Chr7g0203271
rosa_laevigata	RLG00000003538
rosa_multiflora	Rmu_sc0003582.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253890
rosa_rugosa	Rorug07G0075500
rosa_samantha	Rh7AG205000 Rh7BG204400 Rh7CG216000 Rh7DG211600
rosa_wichuraiana	Rw7G017850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	2 cut(s)	306, 621
AclI	AACGTT	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	295, 530
AgsI	TTSAA	2 cut(s)	149, 475
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	6 cut(s)	244, 409, 598, 652, 656, 674
AluI	AGCT	6 cut(s)	244, 409, 598, 652, 656, 674
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	4 cut(s)	372, 386, 696, 714
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	2 cut(s)	403, 406
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	515, 574
AsuNHI	GCTAGC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	415, 418
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	303
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	4 cut(s)	372, 386, 696, 714
BfaI	CTAG	5 cut(s)	258, 653, 671, 675, 704
BfmI	CTRYAG	1 cut(s)	105
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	3 cut(s)	404, 407, 622
BlsI	GCNGC	3 cut(s)	405, 408, 623
Bme1390I	CCNGG	2 cut(s)	303, 586
BmrFI	CCNGG	2 cut(s)	303, 586
BmsI	GCATC	2 cut(s)	390, 690
BmtI	GCTAGC	1 cut(s)	656
BoxI	GACNNNNGTC	1 cut(s)	688
BpmI	CTGGAG	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	586
BsaI	GGTCTC	2 cut(s)	372, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse1I	ACTGG	3 cut(s)	282, 291, 526
BseBI	CCWGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	331
BseMII	CTCAG	4 cut(s)	219, 259, 383, 725
BseNI	ACTGG	3 cut(s)	282, 291, 526
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	415, 418
BseYI	CCCAGC	2 cut(s)	140, 362
BsgI	GTGCAG	1 cut(s)	665
BshFI	GGCC	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	1 cut(s)	586
BslFI	GGGAC	1 cut(s)	288
BsmAI	GTCTC	4 cut(s)	372, 386, 696, 714
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	2 cut(s)	372, 386
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	7, 544
BspACI	CCGC	2 cut(s)	306, 621
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	4 cut(s)	220, 258, 382, 724
BspHI	TCATGA	1 cut(s)	430
BspOI	GCTAGC	1 cut(s)	656
BspTNI	GGTCTC	2 cut(s)	372, 386
BsrI	ACTGG	3 cut(s)	282, 291, 526
BssMI	GATC	2 cut(s)	7, 544
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	690
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	138, 654
BstDEI	CTNAG	6 cut(s)	46, 228, 245, 369, 417, 711
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	2 cut(s)	10, 547
BstMAI	GTCTC	4 cut(s)	372, 386, 696, 714
BstMBI	GATC	2 cut(s)	7, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 610
BstNI	CCWGG	1 cut(s)	303
BstPAI	GACNNNNGTC	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	301, 584
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	415, 418
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	138, 654
CciI	TCATGA	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	294, 529
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	8 cut(s)	160, 221, 376, 397, 431, 482, 509, 601
CviQI	GTAC	2 cut(s)	294, 529
DdeI	CTNAG	6 cut(s)	46, 228, 245, 369, 417, 711
DpnI	GATC	2 cut(s)	9, 546
DpnII	GATC	2 cut(s)	7, 544
EaeI	YGGCCR	1 cut(s)	622
EciI	GGCGGA	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	600
Eco31I	GGTCTC	2 cut(s)	372, 386
Eco32I	GATATC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	8 cut(s)	163, 224, 379, 400, 434, 485, 512, 604
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	8 cut(s)	159, 220, 375, 396, 430, 481, 508, 600
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	404, 407, 622
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	3 cut(s)	404, 407, 622
FspBI	CTAG	5 cut(s)	258, 653, 671, 675, 704
GluI	GCNGC	3 cut(s)	404, 407, 622
GsaI	CCCAGC	2 cut(s)	144, 366
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	8 cut(s)	163, 224, 379, 400, 434, 485, 512, 604
HinfI	GANTC	7 cut(s)	61, 101, 215, 281, 380, 569, 707
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	2 cut(s)	515, 574
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	5 cut(s)	16, 90, 211, 248, 714
Hpy188III	TCNNGA	7 cut(s)	58, 236, 371, 431, 573, 659, 695
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	3 cut(s)	95, 138, 436
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	403, 604, 613, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 610
HpyF3I	CTNAG	6 cut(s)	46, 228, 245, 369, 417, 711
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	8 cut(s)	163, 224, 379, 400, 434, 485, 512, 604
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 544
LmnI	GCTCC	2 cut(s)	649, 661
Lsp1109I	GCAGC	2 cut(s)	415, 418
LweI	GCATC	2 cut(s)	390, 690
MaeI	CTAG	5 cut(s)	258, 653, 671, 675, 704
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	223, 286
MalI	GATC	2 cut(s)	9, 546
MboI	GATC	2 cut(s)	7, 544
MboII	GAAGA	3 cut(s)	344, 419, 515
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	2 cut(s)	447, 718
MlyI	GAGTC	1 cut(s)	716
MnlI	CCTC	8 cut(s)	44, 80, 91, 205, 223, 256, 304, 346
MseI	TTAA	2 cut(s)	270, 549
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	303, 586
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	250, 610
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	2 cut(s)	7, 544
NheI	GCTAGC	1 cut(s)	652
NlaIII	CATG	8 cut(s)	163, 224, 379, 400, 434, 485, 512, 604
NmuCI	GTSAC	1 cut(s)	286
PagI	TCATGA	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	6 cut(s)	61, 101, 215, 281, 380, 569
PkrI	GCNGC	3 cut(s)	405, 408, 623
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PshAI	GACNNNNGTC	1 cut(s)	688
Psp124BI	GAGCTC	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	2 cut(s)	140, 362
PspGI	CCWGG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	2 cut(s)	295, 530
RsaNI	GTAC	2 cut(s)	294, 529
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	270, 549
SatI	GCNGC	3 cut(s)	404, 407, 622
Sau3AI	GATC	2 cut(s)	7, 544
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	303, 586
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	2 cut(s)	390, 690
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	447, 718
SsiI	CCGC	2 cut(s)	306, 621
SspMI	CTAG	5 cut(s)	258, 653, 671, 675, 704
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	301, 584
TaaI	ACNGT	1 cut(s)	690
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	36, 351
TasI	AATT	2 cut(s)	447, 718
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	6 cut(s)	61, 101, 215, 281, 380, 569
Tru1I	TTAA	2 cut(s)	270, 549
Tru9I	TTAA	2 cut(s)	270, 549
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	403, 406
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	6 cut(s)	419, 447, 455, 498, 525, 567
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	5 cut(s)	258, 653, 671, 675, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.